|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr18 | genome | chr18:763379..765718 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G02350.1 vs.
Match: EWM23444.1 (branched-chain alpha-keto acid dehydrogenase subunit e2 [Nannochloropsis gaditana]) HSP 1 Score: 1102.0 bits (2849), Expect = 0.000e+0 Identity = 633/777 (81.47%), Postives = 670/777 (86.23%), Query Frame = 0
Query: 1 MRPLTLT----GAGALAVVLLAQASTAFIPRHAAVRNLFASRPQQQQHASRVVLSMVEAIEIAMPALSSTMTEGKIVEWTAKVGDKIKAGQTIMVVESDKADMDVEAFEEGFLAKIVFGDGASAPVGATVALLAKTKDEVAAVAAMTPGAAPSAAAPAAPTAPAPAVTAPAGGAGGLGVPTNEISMPALSSTMTEGKIVEWTVKVGDKVKSGQTIMVVESDKADMDVEAFESGYVAAILAKAGEATPVGAPCALLVDNEADIETVKAALAGGASVGAAAPVAATAAAAPAAAAAVPAGPEKPAFDFSEVSMPALSSTMTSGKIVAWTAKVGDSIKSGQTVMVVESDKADMDVESFEGGFLASILTGEGQTANVGAPVALLAAKKEDVPALQAYGQALKASLSGAPTPVAAAPAPAAAAPAPAAATAATTVATTPGERVVASGYAKKLASEAGVDLTAVSGTGLGGRVVSANVIAAAGGKAAPKPLGYQSPAGAATPLGRKLAEEAGLDLKTMKGTGEFGRVTADDVLIATGKKSPIKKKAAAAAGGKPAKAPKPAPGPMPTGIKPMDGMMKAVAKNMEKTLDVPIFRVSRLITTDKFDKLYAEVKGQGVSVSALLAKAVAITLARYPILNAAYDPSGAIKYNADINVAMAVALDGGLITPTLKNADKMDLVSLGAKWRELVKKAQEKRLTPDEYTTGTFTISNLGMYGVSAFDAILPPGQGSILAIGGSLPTVVVRKDGSFAVQKQMTVTITCDHRHIYGADAAEFLRDLAELMEED 774
MR TLT GAG LA+VLLAQAS AFIP AVR LF +P +Q ASRVVLSM EAIEIAMPALSSTMTEGKIVEWTAKVGDKIKAGQTIMVVESDKADMDVEAFEEGFLAKIVFGDGASAPVGATVALLA++K+E+ AV AMTPGA+P A APAA APAP +APAGG LGVPTNEI+MPALSSTMTEGKIVEWTVKVGDK+K+GQTIMVVESDKADMDVEAFESGYVAAILAKAGEAT VGAPCALLVDNEAD+E VKAALA DF+EV+MPALSSTMTSGKIVAWTAKVGDS+K+GQTVMVVESDKADMDVE+FEGG LASILTGEG +A VG PVALLAAKKEDVPALQAYGQALKASLSGAP P A A AA APA + AAT V + PGERVVASGYAKKLASEAGVDL +V GTGLGGRVV ANVIAAA GK KPLGY+SP G+ATPL ++LA EAGLDLK++KGTGEFGRVTADDVLIATGKKSP+KK+AA G P KAPKPAPGPMPTG K MDGMMKAVAKNMEKTLDVPIFRVSRLITTDKFDK+YAEVKGQGVSVSALLAKAVA TL R+PILNAAYDP+GAIKYN DIN+AMAVALDGGLITPTL+NA+ MDLVSLG KWRELVKKAQEKRL PDEYTTGTFTISNLGMYGVSAFDAILPPGQGSILAIGGS+PTVVVRKDGSFAVQKQMTVTITCDHRHIYGADAAEFLRDLAELMEED
Sbjct: 1 MRQTTLTHKAVGAGLLALVLLAQASMAFIPGRMAVRTLF--QPLKQHQASRVVLSMAEAIEIAMPALSSTMTEGKIVEWTAKVGDKIKAGQTIMVVESDKADMDVEAFEEGFLAKIVFGDGASAPVGATVALLARSKEEIPAVQAMTPGASP-ATAPAA--APAPESSAPAGGGASLGVPTNEIAMPALSSTMTEGKIVEWTVKVGDKIKAGQTIMVVESDKADMDVEAFESGYVAAILAKAGEATLVGAPCALLVDNEADVEKVKAALASA------------------------------DVDFAEVAMPALSSTMTSGKIVAWTAKVGDSVKAGQTVMVVESDKADMDVEAFEGGVLASILTGEGDSAKVGDPVALLAAKKEDVPALQAYGQALKASLSGAPAPAPAVSAAAATAPAASTPVAATAV-SPPGERVVASGYAKKLASEAGVDLRSVPGTGLGGRVVGANVIAAAAGKPMAKPLGYRSPPGSATPLAKRLAAEAGLDLKSLKGTGEFGRVTADDVLIATGKKSPVKKQAAGGKAG-PVKAPKPAPGPMPTGTKSMDGMMKAVAKNMEKTLDVPIFRVSRLITTDKFDKMYAEVKGQGVSVSALLAKAVAKTLERHPILNAAYDPAGAIKYNPDINIAMAVALDGGLITPTLRNANAMDLVSLGGKWRELVKKAQEKRLAPDEYTTGTFTISNLGMYGVSAFDAILPPGQGSILAIGGSIPTVVVRKDGSFAVQKQMTVTITCDHRHIYGADAAEFLRDLAELMEED 740
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G02350.1 ID=NO18G02350.1|Name=NO18G02350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2340bp
ATGAGACCGTTGACCTTGACTGGGGCTGGGGCCTTGGCCGTGGTGCTCCT
CGCCCAGGCCAGCACCGCCTTTATCCCCAGGCACGCCGCCGTCCGCAACC
TCTTCGCTTCCCGGCCACAGCAGCAACAGCATGCCTCCCGCGTCGTCCTT
TCCATGGTTGAGGCCATCGAGATTGCCATGCCTGCCCTGTCCTCCACCAT
GACAGAAGGGAAAATCGTAGAGTGGACCGCAAAGGTCGGGGATAAGATCA
AAGCTGGGCAGACAATCATGGTGGTGGAGTCCGACAAGGCAGACATGGAC
GTAGAGGCCTTCGAGGAAGGCTTCCTGGCGAAGATTGTTTTCGGTGATGG
CGCCTCTGCCCCTGTAGGTGCCACCGTCGCACTCCTTGCCAAAACCAAGG
ACGAAGTCGCAGCCGTCGCCGCCATGACCCCCGGTGCAGCTCCCAGTGCT
GCTGCGCCTGCTGCTCCCACTGCCCCCGCTCCTGCGGTCACAGCGCCTGC
GGGAGGTGCAGGGGGTTTGGGTGTGCCGACCAACGAGATCAGCATGCCTG
CCCTGTCCTCCACCATGACCGAAGGGAAGATTGTGGAGTGGACCGTGAAG
GTGGGGGACAAGGTCAAGTCCGGGCAGACCATCATGGTTGTGGAGTCCGA
CAAGGCAGACATGGATGTGGAGGCATTTGAGAGTGGGTACGTGGCGGCCA
TCCTCGCCAAGGCCGGAGAGGCCACGCCTGTGGGAGCGCCTTGTGCCCTC
TTGGTCGACAACGAGGCTGACATCGAGACGGTCAAGGCAGCCCTCGCCGG
AGGTGCCAGCGTCGGGGCCGCTGCCCCTGTCGCTGCTACTGCTGCTGCTG
CGCCTGCTGCTGCTGCTGCTGTGCCTGCAGGGCCGGAAAAACCGGCGTTT
GACTTCTCAGAGGTGTCCATGCCGGCCCTGTCCTCGACCATGACAAGTGG
AAAGATCGTGGCGTGGACGGCCAAGGTGGGGGATAGTATCAAGAGCGGCC
AGACGGTTATGGTGGTTGAATCCGATAAGGCAGATATGGACGTGGAGAGC
TTTGAGGGAGGCTTCCTTGCGTCTATCTTGACCGGCGAAGGCCAGACCGC
CAATGTGGGCGCGCCCGTCGCCCTCCTGGCAGCGAAGAAGGAGGACGTGC
CCGCCCTCCAAGCATATGGCCAAGCCCTCAAGGCCTCCCTCTCCGGTGCC
CCCACACCTGTTGCTGCAGCGCCTGCTCCTGCCGCTGCTGCTCCTGCTCC
TGCTGCTGCTACTGCTGCTACCACGGTTGCGACTACTCCAGGCGAGCGTG
TGGTTGCCTCCGGGTATGCGAAGAAATTGGCGTCTGAAGCAGGTGTGGAT
TTGACGGCTGTATCTGGTACAGGGTTGGGAGGCCGTGTGGTGAGTGCCAA
CGTCATCGCTGCAGCTGGAGGGAAGGCCGCGCCCAAGCCCCTTGGTTACC
AGAGCCCGGCGGGAGCGGCGACACCGCTAGGGAGGAAGCTGGCGGAGGAA
GCGGGTTTGGACCTTAAGACGATGAAGGGGACGGGCGAATTCGGGCGTGT
CACGGCGGATGATGTTTTGATTGCCACTGGCAAGAAGAGCCCGATCAAGA
AGAAGGCTGCTGCTGCGGCTGGGGGCAAGCCGGCCAAGGCACCCAAGCCG
GCGCCGGGACCTATGCCGACGGGCATTAAGCCGATGGACGGAATGATGAA
GGCCGTGGCTAAGAATATGGAGAAGACCCTGGACGTTCCGATCTTCCGGG
TATCTCGTTTGATCACCACCGACAAGTTCGACAAACTGTACGCGGAAGTG
AAGGGGCAGGGCGTGAGTGTCTCGGCCTTGCTTGCCAAGGCGGTGGCTAT
CACTTTGGCACGCTACCCGATTTTGAACGCTGCCTATGACCCTTCTGGCG
CGATCAAGTATAACGCGGACATTAACGTGGCTATGGCCGTTGCCTTGGAT
GGGGGCCTCATCACCCCCACCTTGAAAAACGCCGACAAGATGGACTTGGT
CTCCCTCGGGGCAAAATGGCGCGAACTCGTCAAGAAGGCGCAAGAGAAAC
GGCTAACCCCCGACGAGTATACCACGGGTACCTTTACCATCTCCAATCTC
GGAATGTACGGCGTGTCCGCCTTTGACGCTATCCTCCCTCCTGGCCAAGG
ATCGATCTTGGCGATTGGAGGGTCGCTGCCCACGGTAGTGGTGAGGAAGG
ACGGAAGTTTCGCGGTTCAAAAGCAGATGACTGTGACGATCACATGCGAC
CATCGTCATATCTACGGAGCGGATGCTGCCGAGTTCCTGCGGGACTTGGC
TGAGTTGATGGAGGAGGATGTGGAGAGTTTGCTCGACTAG back to topprotein sequence of NO18G02350.1 >NO18G02350.1-protein ID=NO18G02350.1-protein|Name=NO18G02350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=780bp
MRPLTLTGAGALAVVLLAQASTAFIPRHAAVRNLFASRPQQQQHASRVVL
SMVEAIEIAMPALSSTMTEGKIVEWTAKVGDKIKAGQTIMVVESDKADMD
VEAFEEGFLAKIVFGDGASAPVGATVALLAKTKDEVAAVAAMTPGAAPSA
AAPAAPTAPAPAVTAPAGGAGGLGVPTNEISMPALSSTMTEGKIVEWTVK
VGDKVKSGQTIMVVESDKADMDVEAFESGYVAAILAKAGEATPVGAPCAL
LVDNEADIETVKAALAGGASVGAAAPVAATAAAAPAAAAAVPAGPEKPAF
DFSEVSMPALSSTMTSGKIVAWTAKVGDSIKSGQTVMVVESDKADMDVES
FEGGFLASILTGEGQTANVGAPVALLAAKKEDVPALQAYGQALKASLSGA
PTPVAAAPAPAAAAPAPAAATAATTVATTPGERVVASGYAKKLASEAGVD
LTAVSGTGLGGRVVSANVIAAAGGKAAPKPLGYQSPAGAATPLGRKLAEE
AGLDLKTMKGTGEFGRVTADDVLIATGKKSPIKKKAAAAAGGKPAKAPKP
APGPMPTGIKPMDGMMKAVAKNMEKTLDVPIFRVSRLITTDKFDKLYAEV
KGQGVSVSALLAKAVAITLARYPILNAAYDPSGAIKYNADINVAMAVALD
GGLITPTLKNADKMDLVSLGAKWRELVKKAQEKRLTPDEYTTGTFTISNL
GMYGVSAFDAILPPGQGSILAIGGSLPTVVVRKDGSFAVQKQMTVTITCD
HRHIYGADAAEFLRDLAELMEEDVESLLD* back to topmRNA from alignment at chr18:763379..765718+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G02350.1 ID=NO18G02350.1|Name=NO18G02350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2340bp|location=Sequence derived from alignment at chr18:763379..765718+ (Nannochloropsis oceanica)
ATGAGACCGTTGACCTTGACTGGGGCTGGGGCCTTGGCCGTGGTGCTCCT
CGCCCAGGCCAGCACCGCCTTTATCCCCAGGCACGCCGCCGTCCGCAACC
TCTTCGCTTCCCGGCCACAGCAGCAACAGCATGCCTCCCGCGTCGTCCTT
TCCATGGTTGAGGCCATCGAGATTGCCATGCCTGCCCTGTCCTCCACCAT
GACAGAAGGGAAAATCGTAGAGTGGACCGCAAAGGTCGGGGATAAGATCA
AAGCTGGGCAGACAATCATGGTGGTGGAGTCCGACAAGGCAGACATGGAC
GTAGAGGCCTTCGAGGAAGGCTTCCTGGCGAAGATTGTTTTCGGTGATGG
CGCCTCTGCCCCTGTAGGTGCCACCGTCGCACTCCTTGCCAAAACCAAGG
ACGAAGTCGCAGCCGTCGCCGCCATGACCCCCGGTGCAGCTCCCAGTGCT
GCTGCGCCTGCTGCTCCCACTGCCCCCGCTCCTGCGGTCACAGCGCCTGC
GGGAGGTGCAGGGGGTTTGGGTGTGCCGACCAACGAGATCAGCATGCCTG
CCCTGTCCTCCACCATGACCGAAGGGAAGATTGTGGAGTGGACCGTGAAG
GTGGGGGACAAGGTCAAGTCCGGGCAGACCATCATGGTTGTGGAGTCCGA
CAAGGCAGACATGGATGTGGAGGCATTTGAGAGTGGGTACGTGGCGGCCA
TCCTCGCCAAGGCCGGAGAGGCCACGCCTGTGGGAGCGCCTTGTGCCCTC
TTGGTCGACAACGAGGCTGACATCGAGACGGTCAAGGCAGCCCTCGCCGG
AGGTGCCAGCGTCGGGGCCGCTGCCCCTGTCGCTGCTACTGCTGCTGCTG
CGCCTGCTGCTGCTGCTGCTGTGCCTGCAGGGCCGGAAAAACCGGCGTTT
GACTTCTCAGAGGTGTCCATGCCGGCCCTGTCCTCGACCATGACAAGTGG
AAAGATCGTGGCGTGGACGGCCAAGGTGGGGGATAGTATCAAGAGCGGCC
AGACGGTTATGGTGGTTGAATCCGATAAGGCAGATATGGACGTGGAGAGC
TTTGAGGGAGGCTTCCTTGCGTCTATCTTGACCGGCGAAGGCCAGACCGC
CAATGTGGGCGCGCCCGTCGCCCTCCTGGCAGCGAAGAAGGAGGACGTGC
CCGCCCTCCAAGCATATGGCCAAGCCCTCAAGGCCTCCCTCTCCGGTGCC
CCCACACCTGTTGCTGCAGCGCCTGCTCCTGCCGCTGCTGCTCCTGCTCC
TGCTGCTGCTACTGCTGCTACCACGGTTGCGACTACTCCAGGCGAGCGTG
TGGTTGCCTCCGGGTATGCGAAGAAATTGGCGTCTGAAGCAGGTGTGGAT
TTGACGGCTGTATCTGGTACAGGGTTGGGAGGCCGTGTGGTGAGTGCCAA
CGTCATCGCTGCAGCTGGAGGGAAGGCCGCGCCCAAGCCCCTTGGTTACC
AGAGCCCGGCGGGAGCGGCGACACCGCTAGGGAGGAAGCTGGCGGAGGAA
GCGGGTTTGGACCTTAAGACGATGAAGGGGACGGGCGAATTCGGGCGTGT
CACGGCGGATGATGTTTTGATTGCCACTGGCAAGAAGAGCCCGATCAAGA
AGAAGGCTGCTGCTGCGGCTGGGGGCAAGCCGGCCAAGGCACCCAAGCCG
GCGCCGGGACCTATGCCGACGGGCATTAAGCCGATGGACGGAATGATGAA
GGCCGTGGCTAAGAATATGGAGAAGACCCTGGACGTTCCGATCTTCCGGG
TATCTCGTTTGATCACCACCGACAAGTTCGACAAACTGTACGCGGAAGTG
AAGGGGCAGGGCGTGAGTGTCTCGGCCTTGCTTGCCAAGGCGGTGGCTAT
CACTTTGGCACGCTACCCGATTTTGAACGCTGCCTATGACCCTTCTGGCG
CGATCAAGTATAACGCGGACATTAACGTGGCTATGGCCGTTGCCTTGGAT
GGGGGCCTCATCACCCCCACCTTGAAAAACGCCGACAAGATGGACTTGGT
CTCCCTCGGGGCAAAATGGCGCGAACTCGTCAAGAAGGCGCAAGAGAAAC
GGCTAACCCCCGACGAGTATACCACGGGTACCTTTACCATCTCCAATCTC
GGAATGTACGGCGTGTCCGCCTTTGACGCTATCCTCCCTCCTGGCCAAGG
ATCGATCTTGGCGATTGGAGGGTCGCTGCCCACGGTAGTGGTGAGGAAGG
ACGGAAGTTTCGCGGTTCAAAAGCAGATGACTGTGACGATCACATGCGAC
CATCGTCATATCTACGGAGCGGATGCTGCCGAGTTCCTGCGGGACTTGGC
TGAGTTGATGGAGGAGGATGTGGAGAGTTTGCTCGACTAG back to topCoding sequence (CDS) from alignment at chr18:763379..765718+ >NO18G02350.1 ID=NO18G02350.1|Name=NO18G02350.1|organism=Nannochloropsis oceanica|type=CDS|length=2340bp|location=Sequence derived from alignment at chr18:763379..765718+ (Nannochloropsis oceanica)
ATGAGACCGTTGACCTTGACTGGGGCTGGGGCCTTGGCCGTGGTGCTCCT
CGCCCAGGCCAGCACCGCCTTTATCCCCAGGCACGCCGCCGTCCGCAACC
TCTTCGCTTCCCGGCCACAGCAGCAACAGCATGCCTCCCGCGTCGTCCTT
TCCATGGTTGAGGCCATCGAGATTGCCATGCCTGCCCTGTCCTCCACCAT
GACAGAAGGGAAAATCGTAGAGTGGACCGCAAAGGTCGGGGATAAGATCA
AAGCTGGGCAGACAATCATGGTGGTGGAGTCCGACAAGGCAGACATGGAC
GTAGAGGCCTTCGAGGAAGGCTTCCTGGCGAAGATTGTTTTCGGTGATGG
CGCCTCTGCCCCTGTAGGTGCCACCGTCGCACTCCTTGCCAAAACCAAGG
ACGAAGTCGCAGCCGTCGCCGCCATGACCCCCGGTGCAGCTCCCAGTGCT
GCTGCGCCTGCTGCTCCCACTGCCCCCGCTCCTGCGGTCACAGCGCCTGC
GGGAGGTGCAGGGGGTTTGGGTGTGCCGACCAACGAGATCAGCATGCCTG
CCCTGTCCTCCACCATGACCGAAGGGAAGATTGTGGAGTGGACCGTGAAG
GTGGGGGACAAGGTCAAGTCCGGGCAGACCATCATGGTTGTGGAGTCCGA
CAAGGCAGACATGGATGTGGAGGCATTTGAGAGTGGGTACGTGGCGGCCA
TCCTCGCCAAGGCCGGAGAGGCCACGCCTGTGGGAGCGCCTTGTGCCCTC
TTGGTCGACAACGAGGCTGACATCGAGACGGTCAAGGCAGCCCTCGCCGG
AGGTGCCAGCGTCGGGGCCGCTGCCCCTGTCGCTGCTACTGCTGCTGCTG
CGCCTGCTGCTGCTGCTGCTGTGCCTGCAGGGCCGGAAAAACCGGCGTTT
GACTTCTCAGAGGTGTCCATGCCGGCCCTGTCCTCGACCATGACAAGTGG
AAAGATCGTGGCGTGGACGGCCAAGGTGGGGGATAGTATCAAGAGCGGCC
AGACGGTTATGGTGGTTGAATCCGATAAGGCAGATATGGACGTGGAGAGC
TTTGAGGGAGGCTTCCTTGCGTCTATCTTGACCGGCGAAGGCCAGACCGC
CAATGTGGGCGCGCCCGTCGCCCTCCTGGCAGCGAAGAAGGAGGACGTGC
CCGCCCTCCAAGCATATGGCCAAGCCCTCAAGGCCTCCCTCTCCGGTGCC
CCCACACCTGTTGCTGCAGCGCCTGCTCCTGCCGCTGCTGCTCCTGCTCC
TGCTGCTGCTACTGCTGCTACCACGGTTGCGACTACTCCAGGCGAGCGTG
TGGTTGCCTCCGGGTATGCGAAGAAATTGGCGTCTGAAGCAGGTGTGGAT
TTGACGGCTGTATCTGGTACAGGGTTGGGAGGCCGTGTGGTGAGTGCCAA
CGTCATCGCTGCAGCTGGAGGGAAGGCCGCGCCCAAGCCCCTTGGTTACC
AGAGCCCGGCGGGAGCGGCGACACCGCTAGGGAGGAAGCTGGCGGAGGAA
GCGGGTTTGGACCTTAAGACGATGAAGGGGACGGGCGAATTCGGGCGTGT
CACGGCGGATGATGTTTTGATTGCCACTGGCAAGAAGAGCCCGATCAAGA
AGAAGGCTGCTGCTGCGGCTGGGGGCAAGCCGGCCAAGGCACCCAAGCCG
GCGCCGGGACCTATGCCGACGGGCATTAAGCCGATGGACGGAATGATGAA
GGCCGTGGCTAAGAATATGGAGAAGACCCTGGACGTTCCGATCTTCCGGG
TATCTCGTTTGATCACCACCGACAAGTTCGACAAACTGTACGCGGAAGTG
AAGGGGCAGGGCGTGAGTGTCTCGGCCTTGCTTGCCAAGGCGGTGGCTAT
CACTTTGGCACGCTACCCGATTTTGAACGCTGCCTATGACCCTTCTGGCG
CGATCAAGTATAACGCGGACATTAACGTGGCTATGGCCGTTGCCTTGGAT
GGGGGCCTCATCACCCCCACCTTGAAAAACGCCGACAAGATGGACTTGGT
CTCCCTCGGGGCAAAATGGCGCGAACTCGTCAAGAAGGCGCAAGAGAAAC
GGCTAACCCCCGACGAGTATACCACGGGTACCTTTACCATCTCCAATCTC
GGAATGTACGGCGTGTCCGCCTTTGACGCTATCCTCCCTCCTGGCCAAGG
ATCGATCTTGGCGATTGGAGGGTCGCTGCCCACGGTAGTGGTGAGGAAGG
ACGGAAGTTTCGCGGTTCAAAAGCAGATGACTGTGACGATCACATGCGAC
CATCGTCATATCTACGGAGCGGATGCTGCCGAGTTCCTGCGGGACTTGGC
TGAGTTGATGGAGGAGGATGTGGAGAGTTTGCTCGACTAG back to top
|