NO18G02340.1, NO18G02340.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G02340.1
Unique Name	NO18G02340.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1308
Alignment location	chr18:759778..762482 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:759778..762482 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO18G02340.1 vs.
Match: EWM23443.1 (hypothetical protein Naga_100594g4 [Nannochloropsis gaditana])

HSP 1 Score: 135.2 bits (339), Expect = 4.900e-28
Identity = 63/77 (81.82%), Postives = 69/77 (89.61%), Query Frame = 0

Query:   87 LKRERAAPLWEDPALMTPEALNDIFAPDEKENIMLLRSMWTASCIFRLDGILVDSLDIQARIWETIAESISAPPPAL 164
            L RE+AAPLWEDP LMT EALN+IFAPDEKENIMLLRSMWTASCIFRLDGI VDSLD+QAR+WE +AE IS  PP+L
Sbjct:   74 LCREKAAPLWEDPQLMTAEALNEIFAPDEKENIMLLRSMWTASCIFRLDGIFVDSLDLQARVWEQVAEGISGTPPSL 150

The following BLAST results are available for this feature:

BLAST of NO18G02340.1 vs.

BLAST of NO18G02340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23443.1	4.900e-28	81.82	hypothetical protein Naga_100594g4 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G02340	NO18G02340	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G02340.1	NO18G02340.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G02340.1.cds1	NO18G02340.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02340.1.cds2	NO18G02340.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02340.1.cds3	NO18G02340.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02340.1.cds4	NO18G02340.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02340.1.cds5	NO18G02340.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02340.1.cds6	NO18G02340.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02340.1.cds7	NO18G02340.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02340.1.cds8	NO18G02340.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02340.1.cds9	NO18G02340.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02340.1.cds10	NO18G02340.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:759778..762482-
coding sequence from alignment at chr18:759778..762482-

mRNA sequence

>NO18G02340.1 ID=NO18G02340.1|Name=NO18G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1308bp
ATGCCCCCTCTCCAGTTGGCTCTAGCCCTTTTTTTGGCCTGCCTTTCGGC
CAGCGCCGCCTTCCTCCACACCGCCTTCTCCTCGCCCTCCTCTTCTGTCA
CTTTCTTCTTCCCACGCGTACGTTCTATGGCAACTCCAGCAACAGAACCC
ATCCACAAGGGGAGAAGCCGTATTGTGGCCTTAGCAAGTGGTGGCGGGTG
GGATGACGATGAAGACGTCCGCTTCTCAGGGAGCAGCAAACATATTGACA
CGGGCTTTCTCAAGCGCGAGCGAGCTGCTCCTCTGTGGGAAGACCCTGCG
CTCATGACACCCGAGGCCCTGAATGATATTTTCGCGCCTGATGAGAAGGA
AAATATCATGCTCCTCCGCTCCATGTGGACCGCCTCCTGCATCTTCCGCC
TGGACGGCATCCTTGTCGACTCCCTTGACATCCAAGCCCGTATTTGGGAG
ACCATCGCGGAATCAATCTCTGCACCTCCACCGGCCCTGAGTCAGGTTTC
TCGAGCCCTGCATTACTCTCCGGAAGTGGCGGTCCACAAAGTGTTCGACT
GGACGGAGGACGCGGAGGAGGCGCATCGCATTGCCCAAATATTCGACGAG
GTCGCCATTGAAGAATTTGAACGAGAAGCAGAGCGCGGCACCCTCACGGC
CCTCCCCGGCAGCGTGGAGCTTATGGCCGACATGTTGGAAAGCGAGATTC
CTTCCTCTGTCCTCTCGAATCTCCCTCTGGAGGTGATGGAGATGGTCTTA
GAGAAAATAGGGGTGAAGGATTTAGTAGAGTGCGTCGAGACCTACGACGA
TCGGCTCAAGACCGAGAGCCAGCTCCTCCTCAACGCCTGCCTTGAGATGG
AGCGCCCTCCTCGGCACGCGTGTTTCTTCGACTTTTCCGCAGAGGGCATT
GACACGGCCCATGAGAACGACATGCGGTGCGTGGCTCTCGACGGGCTTTA
CTACCAGGAGCTCGAAATCAATCAATGTGATGCCAAGCTCAACCGTCTGA
CTGACTGGACCCTTCCGCGCTTCCGACAGCTGCTGGAACGATACCCTTTC
GACGAGCAGTTCCTGACCATTACCGCCGTCGCCGCGAACCGGCAGCCGAT
AAAGCGCAGGACTGCCGTCAGTACCTTTGATGAATTCCGCTACGAAAAAA
ACAAGGACGGTAAGCTGGTGCCCACCGAGTCCTATCTGGCTATGGAGCAG
AAACGTGTCGAGCAGAGGGAACGCCGCCTCAAGCACGGCAGGGGACCACC
GGCGGAGGGGAAGAGCAAGTTCTTGTCGCGCGGTAGGGGAGACGAGGAGG
ACGAATAG

protein sequence of NO18G02340.1

>NO18G02340.1-protein ID=NO18G02340.1-protein|Name=NO18G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MPPLQLALALFLACLSASAAFLHTAFSSPSSSVTFFFPRVRSMATPATEP
IHKGRSRIVALASGGGWDDDEDVRFSGSSKHIDTGFLKRERAAPLWEDPA
LMTPEALNDIFAPDEKENIMLLRSMWTASCIFRLDGILVDSLDIQARIWE
TIAESISAPPPALSQVSRALHYSPEVAVHKVFDWTEDAEEAHRIAQIFDE
VAIEEFEREAERGTLTALPGSVELMADMLESEIPSSVLSNLPLEVMEMVL
EKIGVKDLVECVETYDDRLKTESQLLLNACLEMERPPRHACFFDFSAEGI
DTAHENDMRCVALDGLYYQELEINQCDAKLNRLTDWTLPRFRQLLERYPF
DEQFLTITAVAANRQPIKRRTAVSTFDEFRYEKNKDGKLVPTESYLAMEQ
KRVEQRERRLKHGRGPPAEGKSKFLSRGRGDEEDE*

mRNA from alignment at chr18:759778..762482-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G02340.1 ID=NO18G02340.1|Name=NO18G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=2705bp|location=Sequence derived from alignment at chr18:759778..762482- (Nannochloropsis oceanica)
ATGCCCCCTCTCCAGTTGGCTCTAGCCCTTTTTTTGGCCTGCCTTTCGGC
CAGCGCCGCCTTCCTCCACACCGCCTTCTCCTCGCCCTCCTCTTCTGTCA
CTTTCTTCTTCCCACGCGTACGTTCTATGGCAACTCCAGCAACAGAACCC
ATCCACAAGGGGAGAAGCCGTATTGTGGCCTTAGCAAGTGGTGGCGGGTG
GGATGACGATGAAGACGTCCGCTTCTCAGGGAGCAGCAAACATATTGACA
CGGGCTTTCTCAAGGTGCGTCACCCCTCCTTGTTACCCAGCACCCTCCGT
CACCGTGTTTTTCTCTCTGACACTTTTACGATGCACTTCCTCTTCTTATC
CCTTGTCACTCGACCTCTTGAACGAAGATGTCACGTCACCACCACCACCA
CCGCTCCTCTCTTACTCATCCCGACCCCTCCGTCTCTCCCGCCTGCCCTC
CCTCCTTTTCATCCCCAGCGCGAGCGAGCTGCTCCTCTGTGGGAAGACCC
TGCGCTCATGACACCCGAGGCCCTGAATGATATTTTCGCGCCTGATGAGA
AGGAAAATATCATGCTCCTCCGCTCCATGTGGACCGCCTCCTGCATCTTC
CGCCTGGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGAAGGGAGGGAG
AGAGGGAGGGAGGAAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGAAGGAAGGAAGGAAGGGAGGGAGGGACTCCGCACAAGACACTC
AGCCATCAAACCACTACACATTACTGACCTATAGACGGCATCCTTGTCGA
CTCCCTTGACATCCAAGCCCGTATTTGGGAGACCATCGCGGAATCAATCT
CTGGTCAGTCCCTTCCCTCCCTCCCTTCCTTCCTCCCTCCCTTCCCCCTC
CCTAACTCCCTCGTTCCGACCCTCTCTCCTTCCCCATCTCCTACATTCAG
CACCTCCACCGGCCCTGAGTCAGGTTTCTCGAGCCCTGCATTACTCTCCG
GAAGTGGCGGTCCACAAAGTGTTCGACTGGACGGAGGACGCGGGTACGAA
AGCAAGAAGGGAGGGAAGGAAGGAAGGAGGGAGGGAGGGAGGGAGGGAGG
GAAGAATACGAATGGAGGCAGTCCACTAAGTGTTCGACTGAACGGATGAC
AGATGACGGATGACGCCCACGAGGAAGGAAGGAAGTACGCATGCAGAGGT
ATGTCATATCTCACTGTAACACACATCCTAACCCGCAGAGGAGGCGCATC
GCATTGCCCAAATATTCGACGAGGTCGCCATTGAAGAATTTGAACGAGAA
GCAGAGCGCGGGTACGTCCTCCCTCCCTCCCTCCCTGCTTCGTCGTCAAA
GCCCCGTCCTCCCTCGCACCCACCCCCTCCCCCCCACCCTCCTTCCCTCC
CTTCTGCAGCACCCTCACGGCCCTCCCCGGCAGCGTGGAGCTTATGGCCG
ACATGTTGGAAAGCGAGATTCCTTCCTCTGTCCTCTCGAATCTCCCTCTG
GAGGTGATGGAGATGGTCTTAGAGAAAATAGGGGTGAAGGATTTAGTAGA
GTGCGTCGAGACCTACGACGATCGGCTCAAGACCGAGAGCCAGGTGCAAC
CTTCCTCCCACCCATCCCCTCCCTCCCTCCTTCACTCTCTTTTTTCGAAT
AGAATCGTCCGTGTTCGGTGCAACGACATGACTGGACTATCCACCCGCTC
ACCCCTCCCTCCCTCCCTCCCTCCTTCAGCTCCTCCTCAACGCCTGCCTT
GAGATGGAGCGCCCTCCTCGGCACGCGTGTTTCTTCGACTTTTCCGCAGA
GGGCATTGACACGGCCCATGAGAACGACATGCGGGTACGTCTTGGCCTCC
CTCCCTCTCCCGAATGAAGACGCCGCGCTCACCCCTCCCTCCCTCCCTCC
CTCAGTGCGTGGCTCTCGACGGGCTTTACTACCAGGAGCTCGAAATCAAT
CAATGTGATGCCAAGCTCAACCGTCTGACTGACTGGACCCTTCCGCGCTT
CCGACAGCTGCTGGAACGGTGCGTTTCCCCCTTCCCGTGCACCCCTCGCT
CGCTTCCTCTTTCCTTCCCCCTTCCCTTGCTCCCCTGGCTCGCTTCTTCT
TTCCTTCCTTCCTTCCCTCTTTTTCTATTTCAATTTCTATGTTCTATTTT
TTTCGCCCTTGTTGGAAAGTATGGTCGAGATACGGAGGTTCACCCATCCC
TCCCTCCCTCCTCCCTCCCTCCCTCCCCCCCTCCTCCCTCCCTCCCTCCC
TCCTCCCTCCCTCCCTCTCTCCTTAGATACCCTTTCGACGAGCAGTTCCT
GACCATTACCGCCGTCGCCGCGAACCGGCAGCCGATAAAGCGCAGGACTG
CCGTCAGTACCTTTGATGGTATGTCCCTATCTCCTTTCCTCCCTCTCCAT
CCCTCCATCTATTCCTCGTTTCTTTACCCTTTTCATCCCATGTCGGAAAA
CATAGCTGACCCCTCCATCCCTCCCTCCCTCCCTTCCTCCCCCCTTCCAA
CCTATCCCCCTTCCTTTCGACCGTCTCAGAATTCCGCTACGAAAAAAACA
AGGACGGTAAGCTGGTGCCCACCGAGTCCTATCTGGCTATGGAGCAGAAA
CGTGTCGAGCAGAGGGAACGCCGCCTCAAGCACGGCAGGGGACCACCGGC
GGAGGGGAAGAGCAAGTTCTTGTCGCGCGGTAGGGGAGACGAGGAGGACG
AATAG

Coding sequence (CDS) from alignment at chr18:759778..762482-

>NO18G02340.1 ID=NO18G02340.1|Name=NO18G02340.1|organism=Nannochloropsis oceanica|type=CDS|length=1308bp|location=Sequence derived from alignment at chr18:759778..762482- (Nannochloropsis oceanica)
ATGCCCCCTCTCCAGTTGGCTCTAGCCCTTTTTTTGGCCTGCCTTTCGGC
CAGCGCCGCCTTCCTCCACACCGCCTTCTCCTCGCCCTCCTCTTCTGTCA
CTTTCTTCTTCCCACGCGTACGTTCTATGGCAACTCCAGCAACAGAACCC
ATCCACAAGGGGAGAAGCCGTATTGTGGCCTTAGCAAGTGGTGGCGGGTG
GGATGACGATGAAGACGTCCGCTTCTCAGGGAGCAGCAAACATATTGACA
CGGGCTTTCTCAAGCGCGAGCGAGCTGCTCCTCTGTGGGAAGACCCTGCG
CTCATGACACCCGAGGCCCTGAATGATATTTTCGCGCCTGATGAGAAGGA
AAATATCATGCTCCTCCGCTCCATGTGGACCGCCTCCTGCATCTTCCGCC
TGGACGGCATCCTTGTCGACTCCCTTGACATCCAAGCCCGTATTTGGGAG
ACCATCGCGGAATCAATCTCTGCACCTCCACCGGCCCTGAGTCAGGTTTC
TCGAGCCCTGCATTACTCTCCGGAAGTGGCGGTCCACAAAGTGTTCGACT
GGACGGAGGACGCGGAGGAGGCGCATCGCATTGCCCAAATATTCGACGAG
GTCGCCATTGAAGAATTTGAACGAGAAGCAGAGCGCGGCACCCTCACGGC
CCTCCCCGGCAGCGTGGAGCTTATGGCCGACATGTTGGAAAGCGAGATTC
CTTCCTCTGTCCTCTCGAATCTCCCTCTGGAGGTGATGGAGATGGTCTTA
GAGAAAATAGGGGTGAAGGATTTAGTAGAGTGCGTCGAGACCTACGACGA
TCGGCTCAAGACCGAGAGCCAGCTCCTCCTCAACGCCTGCCTTGAGATGG
AGCGCCCTCCTCGGCACGCGTGTTTCTTCGACTTTTCCGCAGAGGGCATT
GACACGGCCCATGAGAACGACATGCGGTGCGTGGCTCTCGACGGGCTTTA
CTACCAGGAGCTCGAAATCAATCAATGTGATGCCAAGCTCAACCGTCTGA
CTGACTGGACCCTTCCGCGCTTCCGACAGCTGCTGGAACGATACCCTTTC
GACGAGCAGTTCCTGACCATTACCGCCGTCGCCGCGAACCGGCAGCCGAT
AAAGCGCAGGACTGCCGTCAGTACCTTTGATGAATTCCGCTACGAAAAAA
ACAAGGACGGTAAGCTGGTGCCCACCGAGTCCTATCTGGCTATGGAGCAG
AAACGTGTCGAGCAGAGGGAACGCCGCCTCAAGCACGGCAGGGGACCACC
GGCGGAGGGGAAGAGCAAGTTCTTGTCGCGCGGTAGGGGAGACGAGGAGG
ACGAATAG

Synonyms

Publications