NO18G02240.1, NO18G02240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G02240.1
Unique NameNO18G02240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1723
Alignment locationchr18:717910..719632 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:717910..719632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G02240.1 vs.
Match: EWM23429.1 (hypothetical protein Naga_100238g4 [Nannochloropsis gaditana])

HSP 1 Score: 429.5 bits (1103), Expect = 1.300e-116
Identity = 263/474 (55.49%), Postives = 330/474 (69.62%), Query Frame = 0 
Query:    1 MVSSTPMSPSPPLS----PPPPPSSSLPRPGNTMRSLEMNYEQ---HDEESATCTLLRKRDGSAGPPVPLLSSPSTIHAMAGHAASVGMLGSSSNVPAPTTSSSTTTTASSTMINSGMVFISGHNADFFLLGTQGIGGSYANARISLALREKRPDILIVQLCSTRLRLLLDPDASIWSYLVDIHAATSSSSSS---SGSGSFDPYHPFTGVAPLLNFSRFASLVIARVVWKALALLVGERRTIAQEYIHSIRLAAAPPSPADHTRVVLGGRDLNTTLSRACHLLTFRERLALLAELALLSLPPFLPAQTACRLLGLSPPFLPIPRGSDAVAEVLHFFSQRHPSLAPLEKEEGLYVLSSLQKLDQP----RFGREDRGLRGRAVVLAVVGASLLPYLQAHWGEVVDRRQLMSRRGGGGGGRGRGGGRGGGGWAWSCVGMAVLVIVGFMLCQAIIFLSAPPHKTFGVVRRDNAGIA 461
            MVS++P+ P PP S       PP  SL RP     S ++ +E+   HDEESA  TL+RKRDG+A P     SS          A ++G   S+S VP     + T   A ST I S + FI+G++ADF+LLG++GIGGS + A++  AL+E+RPD+L+VQ+C TRLRLLLDPDASIWSYL+DIHAA SSSSS       G F PYH   G  PLLNFSRF+SLV+AR+VWKA+A+LVG+RRT A E++ SIRLAA  P P  HTRVVLGGRDL TTL+RA   L+  +RL ++ ++ALLSL P L  +TAC+ LGLSPPFLPIPRGSDA+++VL FF+ RHPSLAPLEKE G Y LSS+QKLD+P      GRE  G   R VVLAVVGASL+P++Q +WG  VDRR+L+S R           G  GGGWAW CVGM +LV++ +MLCQ+I+FLSAP  +TFGVVR  +  +A
Sbjct:   41 MVSASPLPPPPPASRAFPSSVPPGLSLLRP-----STQLPFERPDPHDEESA--TLIRKRDGTADPSASFSSSSLGGDVPLDAALALGSSTSTSTVP----MNPTDHLAHSTTI-SDVHFIAGNHADFYLLGSKGIGGSESLAQVKRALQEQRPDVLLVQICPTRLRLLLDPDASIWSYLIDIHAAISSSSSGQVLGVEGGFSPYHMLAGATPLLNFSRFSSLVLARLVWKAVAVLVGQRRTFAHEFVQSIRLAATTPVPGHHTRVVLGGRDLPTTLARAWLSLSAWDRLGVVKDVALLSL-PCLSGRTACQALGLSPPFLPIPRGSDAMSQVLRFFAHRHPSLAPLEKEGGDYFLSSMQKLDRPVCSREGGREGTG-EERMVVLAVVGASLIPHIQRNWGIPVDRRRLISCR-----------GPRGGGWAWPCVGMVILVLISYMLCQSILFLSAPSQQTFGVVRHKDPSMA 489
The following BLAST results are available for this feature:
BLAST of NO18G02240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23429.11.300e-11655.49hypothetical protein Naga_100238g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02240NO18G02240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G02240.1NO18G02240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G02240.1.cds1NO18G02240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G02240.1 ID=NO18G02240.1|Name=NO18G02240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1723bp
ATGGTGTCCTCTACGCCTATGTCTCCATCACCTCCTCTCTCACCTCCTCC
ACCTCCTTCGTCGTCTCTTCCCCGTCCCGGTAACACCATGCGCTCTTTAG
AAATGAATTATGAGCAGCACGACGAGGAGTCTGCTACTTGTACGTTGCTG
CGCAAACGAGACGGGAGCGCAGGTCCTCCGGTGCCTCTACTTTCCTCTCC
AAGCACCATCCATGCCATGGCTGGTCATGCTGCTTCTGTCGGCATGCTCG
GGAGCAGCAGCAATGTCCCCGCCCCGACGACAAGCAGCAGCACCACCACC
ACCGCCTCTAGCACTATGATCAATTCTGGCATGGTCTTTATTTCTGGTCA
TAACGCCGACTTTTTCCTCCTGGGTACTCAGGGGATTGGTGGCTCGTATG
CCAACGCCCGAATCTCCCTTGCATTGCGAGAGAAACGACCCGATATTTTG
ATCGTCCAGCTGTGCTCGACCCGGCTCCGTTTACTCCTCGACCCGGACGC
TTCCATCTGGTCCTACCTTGTCGATATCCATGCAGCCACGAGCAGCAGCA
GCAGCAGTAGTGGTAGTGGTAGCTTTGACCCTTACCATCCTTTCACAGGC
GTCGCGCCATTACTCAATTTTTCCCGATTTGCTTCCTTAGTGATCGCACG
AGTTGTCTGGAAGGCTCTTGCCCTCCTGGTAGGGGAACGGAGGACCATCG
CTCAGGAATACATCCACAGCATCCGCCTCGCTGCTGCCCCTCCTTCCCCT
GCGGATCACACGCGTGTCGTTTTGGGTGGTCGGGATTTAAACACAACCCT
CTCCCGAGCTTGTCACCTCTTGACGTTCCGCGAACGTCTCGCCCTTCTGG
CAGAGCTGGCATTGCTCTCCCTCCCTCCCTTCCTCCCCGCCCAAACGGCC
TGTAGATTGCTTGGCTTATCGCCTCCTTTTTTGCCCATTCCTCGAGGTTC
TGATGCTGTGGCAGAGGTGCTTCATTTCTTCTCGCAGCGCCATCCGTCCC
TGGCACCGTTGGAGAAGGAGGAGGGACTCTATGTCCTCTCATCGCTGCAA
AAACTGGACCAGCCACGCTTTGGGAGGGAGGACCGAGGGCTGAGGGGTCG
GGCGGTAGTGCTGGCAGTGGTAGGTGCGTCATTGTTGCCTTACTTACAGG
CCCATTGGGGGGAGGTGGTGGACCGACGGCAGTTGATGTCTCGCAGGGGA
GGCGGAGGGGGAGGACGAGGACGCGGGGGAGGGAGGGGTGGGGGGGGATG
GGCATGGTCATGCGTGGGGATGGCTGTGCTAGTAATCGTTGGTTTCATGC
TCTGTCAGGCGATTATTTTCTTATCGGCGCCACCACATAAGACGTTCGGA
GTGGTTAGAAGGGACAATGCGGGGATAGCTTTATGAGGATGAAAAGGCGG
AAGATAAGGAAGAATTAGATATAGGAATGGGGAGGGGAGGGAATGAAAGA
GGGAGAGATCTCTCGAGGGCCGGAAAGTAGTGGAGGGGAGAGATGTTAAC
GGGAGGAAAGAGAAATGAGAAAAGAATTCTGTACACGAGGGGTCTTATAA
ATAGGTAAACATGAGAAAAGGAGATAATGAGGTGGAGGAAAGATGTGCAT
AATATGTTAACTTGCTAGATATAAATCCCAATAATTGTTTCACCTTAGTC
AAATCATGTGGTGACGAGCATATGAGCCACTAGAAGCCTAACCGTAATAG
CAAGAGGTTCGATTTCATCCGAC
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protein sequence of NO18G02240.1

>NO18G02240.1-protein ID=NO18G02240.1-protein|Name=NO18G02240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MVSSTPMSPSPPLSPPPPPSSSLPRPGNTMRSLEMNYEQHDEESATCTLL
RKRDGSAGPPVPLLSSPSTIHAMAGHAASVGMLGSSSNVPAPTTSSSTTT
TASSTMINSGMVFISGHNADFFLLGTQGIGGSYANARISLALREKRPDIL
IVQLCSTRLRLLLDPDASIWSYLVDIHAATSSSSSSSGSGSFDPYHPFTG
VAPLLNFSRFASLVIARVVWKALALLVGERRTIAQEYIHSIRLAAAPPSP
ADHTRVVLGGRDLNTTLSRACHLLTFRERLALLAELALLSLPPFLPAQTA
CRLLGLSPPFLPIPRGSDAVAEVLHFFSQRHPSLAPLEKEEGLYVLSSLQ
KLDQPRFGREDRGLRGRAVVLAVVGASLLPYLQAHWGEVVDRRQLMSRRG
GGGGGRGRGGGRGGGGWAWSCVGMAVLVIVGFMLCQAIIFLSAPPHKTFG
VVRRDNAGIAL*
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mRNA from alignment at chr18:717910..719632-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02240.1 ID=NO18G02240.1|Name=NO18G02240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1723bp|location=Sequence derived from alignment at chr18:717910..719632- (Nannochloropsis oceanica)
ATGGTGTCCTCTACGCCTATGTCTCCATCACCTCCTCTCTCACCTCCTCC
ACCTCCTTCGTCGTCTCTTCCCCGTCCCGGTAACACCATGCGCTCTTTAG
AAATGAATTATGAGCAGCACGACGAGGAGTCTGCTACTTGTACGTTGCTG
CGCAAACGAGACGGGAGCGCAGGTCCTCCGGTGCCTCTACTTTCCTCTCC
AAGCACCATCCATGCCATGGCTGGTCATGCTGCTTCTGTCGGCATGCTCG
GGAGCAGCAGCAATGTCCCCGCCCCGACGACAAGCAGCAGCACCACCACC
ACCGCCTCTAGCACTATGATCAATTCTGGCATGGTCTTTATTTCTGGTCA
TAACGCCGACTTTTTCCTCCTGGGTACTCAGGGGATTGGTGGCTCGTATG
CCAACGCCCGAATCTCCCTTGCATTGCGAGAGAAACGACCCGATATTTTG
ATCGTCCAGCTGTGCTCGACCCGGCTCCGTTTACTCCTCGACCCGGACGC
TTCCATCTGGTCCTACCTTGTCGATATCCATGCAGCCACGAGCAGCAGCA
GCAGCAGTAGTGGTAGTGGTAGCTTTGACCCTTACCATCCTTTCACAGGC
GTCGCGCCATTACTCAATTTTTCCCGATTTGCTTCCTTAGTGATCGCACG
AGTTGTCTGGAAGGCTCTTGCCCTCCTGGTAGGGGAACGGAGGACCATCG
CTCAGGAATACATCCACAGCATCCGCCTCGCTGCTGCCCCTCCTTCCCCT
GCGGATCACACGCGTGTCGTTTTGGGTGGTCGGGATTTAAACACAACCCT
CTCCCGAGCTTGTCACCTCTTGACGTTCCGCGAACGTCTCGCCCTTCTGG
CAGAGCTGGCATTGCTCTCCCTCCCTCCCTTCCTCCCCGCCCAAACGGCC
TGTAGATTGCTTGGCTTATCGCCTCCTTTTTTGCCCATTCCTCGAGGTTC
TGATGCTGTGGCAGAGGTGCTTCATTTCTTCTCGCAGCGCCATCCGTCCC
TGGCACCGTTGGAGAAGGAGGAGGGACTCTATGTCCTCTCATCGCTGCAA
AAACTGGACCAGCCACGCTTTGGGAGGGAGGACCGAGGGCTGAGGGGTCG
GGCGGTAGTGCTGGCAGTGGTAGGTGCGTCATTGTTGCCTTACTTACAGG
CCCATTGGGGGGAGGTGGTGGACCGACGGCAGTTGATGTCTCGCAGGGGA
GGCGGAGGGGGAGGACGAGGACGCGGGGGAGGGAGGGGTGGGGGGGGATG
GGCATGGTCATGCGTGGGGATGGCTGTGCTAGTAATCGTTGGTTTCATGC
TCTGTCAGGCGATTATTTTCTTATCGGCGCCACCACATAAGACGTTCGGA
GTGGTTAGAAGGGACAATGCGGGGATAGCTTTATGAGGATGAAAAGGCGG
AAGATAAGGAAGAATTAGATATAGGAATGGGGAGGGGAGGGAATGAAAGA
GGGAGAGATCTCTCGAGGGCCGGAAAGTAGTGGAGGGGAGAGATGTTAAC
GGGAGGAAAGAGAAATGAGAAAAGAATTCTGTACACGAGGGGTCTTATAA
ATAGGTAAACATGAGAAAAGGAGATAATGAGGTGGAGGAAAGATGTGCAT
AATATGTTAACTTGCTAGATATAAATCCCAATAATTGTTTCACCTTAGTC
AAATCATGTGGTGACGAGCATATGAGCCACTAGAAGCCTAACCGTAATAG
CAAGAGGTTCGATTTCATCCGAC
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Coding sequence (CDS) from alignment at chr18:717910..719632-

>NO18G02240.1 ID=NO18G02240.1|Name=NO18G02240.1|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at chr18:717910..719632- (Nannochloropsis oceanica)
ATGGTGTCCTCTACGCCTATGTCTCCATCACCTCCTCTCTCACCTCCTCC
ACCTCCTTCGTCGTCTCTTCCCCGTCCCGGTAACACCATGCGCTCTTTAG
AAATGAATTATGAGCAGCACGACGAGGAGTCTGCTACTTGTACGTTGCTG
CGCAAACGAGACGGGAGCGCAGGTCCTCCGGTGCCTCTACTTTCCTCTCC
AAGCACCATCCATGCCATGGCTGGTCATGCTGCTTCTGTCGGCATGCTCG
GGAGCAGCAGCAATGTCCCCGCCCCGACGACAAGCAGCAGCACCACCACC
ACCGCCTCTAGCACTATGATCAATTCTGGCATGGTCTTTATTTCTGGTCA
TAACGCCGACTTTTTCCTCCTGGGTACTCAGGGGATTGGTGGCTCGTATG
CCAACGCCCGAATCTCCCTTGCATTGCGAGAGAAACGACCCGATATTTTG
ATCGTCCAGCTGTGCTCGACCCGGCTCCGTTTACTCCTCGACCCGGACGC
TTCCATCTGGTCCTACCTTGTCGATATCCATGCAGCCACGAGCAGCAGCA
GCAGCAGTAGTGGTAGTGGTAGCTTTGACCCTTACCATCCTTTCACAGGC
GTCGCGCCATTACTCAATTTTTCCCGATTTGCTTCCTTAGTGATCGCACG
AGTTGTCTGGAAGGCTCTTGCCCTCCTGGTAGGGGAACGGAGGACCATCG
CTCAGGAATACATCCACAGCATCCGCCTCGCTGCTGCCCCTCCTTCCCCT
GCGGATCACACGCGTGTCGTTTTGGGTGGTCGGGATTTAAACACAACCCT
CTCCCGAGCTTGTCACCTCTTGACGTTCCGCGAACGTCTCGCCCTTCTGG
CAGAGCTGGCATTGCTCTCCCTCCCTCCCTTCCTCCCCGCCCAAACGGCC
TGTAGATTGCTTGGCTTATCGCCTCCTTTTTTGCCCATTCCTCGAGGTTC
TGATGCTGTGGCAGAGGTGCTTCATTTCTTCTCGCAGCGCCATCCGTCCC
TGGCACCGTTGGAGAAGGAGGAGGGACTCTATGTCCTCTCATCGCTGCAA
AAACTGGACCAGCCACGCTTTGGGAGGGAGGACCGAGGGCTGAGGGGTCG
GGCGGTAGTGCTGGCAGTGGTAGGTGCGTCATTGTTGCCTTACTTACAGG
CCCATTGGGGGGAGGTGGTGGACCGACGGCAGTTGATGTCTCGCAGGGGA
GGCGGAGGGGGAGGACGAGGACGCGGGGGAGGGAGGGGTGGGGGGGGATG
GGCATGGTCATGCGTGGGGATGGCTGTGCTAGTAATCGTTGGTTTCATGC
TCTGTCAGGCGATTATTTTCTTATCGGCGCCACCACATAAGACGTTCGGA
GTGGTTAGAAGGGACAATGCGGGGATAGCTTTATGA
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Synonyms
Publications