NO18G02180.1, NO18G02180.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G02180.1
Unique Name	NO18G02180.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1889
Alignment location	chr18:698241..700129 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:698241..700129 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO18G02180.1 vs.

BLAST of NO18G02180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G02180	NO18G02180	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G02180.1	NO18G02180.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G02180.1.cds1	NO18G02180.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:698241..700129+
coding sequence from alignment at chr18:698241..700129+

mRNA sequence

>NO18G02180.1 ID=NO18G02180.1|Name=NO18G02180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1889bp
GGGGGGGTTGGTCAATGTCGAAGTAATTTCCTCATTTCCTCTGCCGTGGT
AACTTCAAGGAGCATCGGTCCGTTTTCGCCCCCAAAAGCTCGGTTTCTCA
TTTTTCGATCAGGTTTAATTGGTTTCACCCTCATTTGTATGCCTCTCTCT
CCTGGCTTGTGTTTATTTTTAAGATACATGTATTTTGCTGGTGCCCTGAT
ATTTTGAACACATCTTTTCCATTCTCATACACACAAATTAAGGCCTCCTT
CCTCCCAAGATGCTTCCCTCCTCCTCCTCCTCCTCGTTGTCGCCGTCGTC
ACTGGTTCGCGTGAGGAAGCGTCTACTCATCCGCGCCGCAGTCCATGCAC
CGCATTCGACTTTACGTGCCCTCTTCACTCCTTTCTGCCAGCCTCCTGAG
GTTACAAGAAGGAGGGAAGGGGATGACTCGGCCGCCACCTGCCATCTCAC
CAAGGCCGACATACTTGCTGCAATGGGCCAGCCACAGAGAGATAGAGGAG
GGACAGCAGCGGCGTGGCTCGACGCCCTCTTCGCTAACATCGTGGAAGAA
GATGGGAGGGAAGAAAAGGCCCTCGACTTGGAGTCATTCCTGGCCTTCCT
GGAGCGCGGGTCCTGTCTTCACTCTCCTTCACCGCAACCACCCATCTCCT
CCTCATCCCCATCCTCACTCTACCCCCTCCCCGTCCTCACCCCACCCTTG
GGGCGCAAGCCCCTCTCAAGAGCATTATCCACTTCCATTGCTTCTACTCT
CACGCTCATCCCTTCTTCCTGCTCCTCCACCCTGTCCACCACCTTGTCCT
CCCTCCCTCCTTACCCCCGCTGGCAAAAACGGGAATTCACGCACCACATC
CACGTAGTAGAATACATGACCATCGATAAAGACGGGAGGATGGAGTCTTT
GTTAGAAAAAGAGGTGACGGGGAAGGAAGTGCTGCACGTAGAGTGGGAAG
GGGAAAGCAACAGGGGAAAGGAGGAGGGAAGGAAAGGAGGAGGAGGAGAA
GAAGGAGGATGGGGACGCGGGGGTACTGCGCATCGGGAGAGGATTGAATA
CTCGTTCAGGGAAATAATGGATGGAGGAGTGGTGGTGGAGGAAGAATGTG
GAAGGGAGGAGTATGTGCACCTAGCCAGAAGAAGGGAAAGCGGGACACAT
GAAGTGGGCTTAGAAGGCGAGGAGGAGGGGGAGGAGGAGGAAGAGGAGTG
GGAGCGGATGGAAAGCTCGTTGCCGGCGAGGTATTTTAATACGGAGGAAG
GGAAAGGGGGAAGAGGAGAGGACGAGTGGAAGAGGAGAAGAAGGGGAGAT
GAAGGAGGAGGAGGAGAAGAGCGGCCTGAGGAGCAGCAGGAGGGCGGGAG
GGAGGGAGGGGAGGAAGGCGGGTTGCGGCAAGGAGAGAGTGTAAGACGGC
CATCACCTCCACCGGGGGTAGAATCATATCGACCGCAGACGATAGTGACA
GAAGGGGGATTCAGGATGAAATTGGTGCATAAACAGGGGCATCAGTGGTG
GAAGACAGAACGGGAGGAGGAAGAGGGGGAGAGAGAGGGGGAGGAAGGGG
CGTCGTGTGGGGGGCAGTTGGGGAGGGAGATAAGGAAGCAGTCGAAGGGG
AAGAGTTGAGAGACATGCCGTGCGCTTACAAAGAGAGAAAGGTATAAATA
ATCGAAATAAAGCAAAAAAGTGTGCGTATGGTGCGTGTAACCCGCGCGAC
GGCGCCTTTTAGGACAGTGAAGCATCAGAAGAGGGATGAGAGGAGGGACG
GCGAAAGAGAAGGAACCACCAATTCAAAGCGGGTTCGATTTATTTATATT
GTCACGGGGGCGGGTAGCGAGCAAAGGCTGCGAAGCCGACACTTACAAAT
GCATAAGCAAATGAAATGAAAAAAAGAATGAAAGACGAG

protein sequence of NO18G02180.1

>NO18G02180.1-protein ID=NO18G02180.1-protein|Name=NO18G02180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MLPSSSSSSLSPSSLVRVRKRLLIRAAVHAPHSTLRALFTPFCQPPEVTR
RREGDDSAATCHLTKADILAAMGQPQRDRGGTAAAWLDALFANIVEEDGR
EEKALDLESFLAFLERGSCLHSPSPQPPISSSSPSSLYPLPVLTPPLGRK
PLSRALSTSIASTLTLIPSSCSSTLSTTLSSLPPYPRWQKREFTHHIHVV
EYMTIDKDGRMESLLEKEVTGKEVLHVEWEGESNRGKEEGRKGGGGEEGG
WGRGGTAHRERIEYSFREIMDGGVVVEEECGREEYVHLARRRESGTHEVG
LEGEEEGEEEEEEWERMESSLPARYFNTEEGKGGRGEDEWKRRRRGDEGG
GGEERPEEQQEGGREGGEEGGLRQGESVRRPSPPPGVESYRPQTIVTEGG
FRMKLVHKQGHQWWKTEREEEEGEREGEEGASCGGQLGREIRKQSKGKS*

mRNA from alignment at chr18:698241..700129+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G02180.1 ID=NO18G02180.1|Name=NO18G02180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1889bp|location=Sequence derived from alignment at chr18:698241..700129+ (Nannochloropsis oceanica)
GGGGGGGTTGGTCAATGTCGAAGTAATTTCCTCATTTCCTCTGCCGTGGT
AACTTCAAGGAGCATCGGTCCGTTTTCGCCCCCAAAAGCTCGGTTTCTCA
TTTTTCGATCAGGTTTAATTGGTTTCACCCTCATTTGTATGCCTCTCTCT
CCTGGCTTGTGTTTATTTTTAAGATACATGTATTTTGCTGGTGCCCTGAT
ATTTTGAACACATCTTTTCCATTCTCATACACACAAATTAAGGCCTCCTT
CCTCCCAAGATGCTTCCCTCCTCCTCCTCCTCCTCGTTGTCGCCGTCGTC
ACTGGTTCGCGTGAGGAAGCGTCTACTCATCCGCGCCGCAGTCCATGCAC
CGCATTCGACTTTACGTGCCCTCTTCACTCCTTTCTGCCAGCCTCCTGAG
GTTACAAGAAGGAGGGAAGGGGATGACTCGGCCGCCACCTGCCATCTCAC
CAAGGCCGACATACTTGCTGCAATGGGCCAGCCACAGAGAGATAGAGGAG
GGACAGCAGCGGCGTGGCTCGACGCCCTCTTCGCTAACATCGTGGAAGAA
GATGGGAGGGAAGAAAAGGCCCTCGACTTGGAGTCATTCCTGGCCTTCCT
GGAGCGCGGGTCCTGTCTTCACTCTCCTTCACCGCAACCACCCATCTCCT
CCTCATCCCCATCCTCACTCTACCCCCTCCCCGTCCTCACCCCACCCTTG
GGGCGCAAGCCCCTCTCAAGAGCATTATCCACTTCCATTGCTTCTACTCT
CACGCTCATCCCTTCTTCCTGCTCCTCCACCCTGTCCACCACCTTGTCCT
CCCTCCCTCCTTACCCCCGCTGGCAAAAACGGGAATTCACGCACCACATC
CACGTAGTAGAATACATGACCATCGATAAAGACGGGAGGATGGAGTCTTT
GTTAGAAAAAGAGGTGACGGGGAAGGAAGTGCTGCACGTAGAGTGGGAAG
GGGAAAGCAACAGGGGAAAGGAGGAGGGAAGGAAAGGAGGAGGAGGAGAA
GAAGGAGGATGGGGACGCGGGGGTACTGCGCATCGGGAGAGGATTGAATA
CTCGTTCAGGGAAATAATGGATGGAGGAGTGGTGGTGGAGGAAGAATGTG
GAAGGGAGGAGTATGTGCACCTAGCCAGAAGAAGGGAAAGCGGGACACAT
GAAGTGGGCTTAGAAGGCGAGGAGGAGGGGGAGGAGGAGGAAGAGGAGTG
GGAGCGGATGGAAAGCTCGTTGCCGGCGAGGTATTTTAATACGGAGGAAG
GGAAAGGGGGAAGAGGAGAGGACGAGTGGAAGAGGAGAAGAAGGGGAGAT
GAAGGAGGAGGAGGAGAAGAGCGGCCTGAGGAGCAGCAGGAGGGCGGGAG
GGAGGGAGGGGAGGAAGGCGGGTTGCGGCAAGGAGAGAGTGTAAGACGGC
CATCACCTCCACCGGGGGTAGAATCATATCGACCGCAGACGATAGTGACA
GAAGGGGGATTCAGGATGAAATTGGTGCATAAACAGGGGCATCAGTGGTG
GAAGACAGAACGGGAGGAGGAAGAGGGGGAGAGAGAGGGGGAGGAAGGGG
CGTCGTGTGGGGGGCAGTTGGGGAGGGAGATAAGGAAGCAGTCGAAGGGG
AAGAGTTGAGAGACATGCCGTGCGCTTACAAAGAGAGAAAGGTATAAATA
ATCGAAATAAAGCAAAAAAGTGTGCGTATGGTGCGTGTAACCCGCGCGAC
GGCGCCTTTTAGGACAGTGAAGCATCAGAAGAGGGATGAGAGGAGGGACG
GCGAAAGAGAAGGAACCACCAATTCAAAGCGGGTTCGATTTATTTATATT
GTCACGGGGGCGGGTAGCGAGCAAAGGCTGCGAAGCCGACACTTACAAAT
GCATAAGCAAATGAAATGAAAAAAAGAATGAAAGACGAG

Coding sequence (CDS) from alignment at chr18:698241..700129+

>NO18G02180.1 ID=NO18G02180.1|Name=NO18G02180.1|organism=Nannochloropsis oceanica|type=CDS|length=1350bp|location=Sequence derived from alignment at chr18:698241..700129+ (Nannochloropsis oceanica)
ATGCTTCCCTCCTCCTCCTCCTCCTCGTTGTCGCCGTCGTCACTGGTTCG
CGTGAGGAAGCGTCTACTCATCCGCGCCGCAGTCCATGCACCGCATTCGA
CTTTACGTGCCCTCTTCACTCCTTTCTGCCAGCCTCCTGAGGTTACAAGA
AGGAGGGAAGGGGATGACTCGGCCGCCACCTGCCATCTCACCAAGGCCGA
CATACTTGCTGCAATGGGCCAGCCACAGAGAGATAGAGGAGGGACAGCAG
CGGCGTGGCTCGACGCCCTCTTCGCTAACATCGTGGAAGAAGATGGGAGG
GAAGAAAAGGCCCTCGACTTGGAGTCATTCCTGGCCTTCCTGGAGCGCGG
GTCCTGTCTTCACTCTCCTTCACCGCAACCACCCATCTCCTCCTCATCCC
CATCCTCACTCTACCCCCTCCCCGTCCTCACCCCACCCTTGGGGCGCAAG
CCCCTCTCAAGAGCATTATCCACTTCCATTGCTTCTACTCTCACGCTCAT
CCCTTCTTCCTGCTCCTCCACCCTGTCCACCACCTTGTCCTCCCTCCCTC
CTTACCCCCGCTGGCAAAAACGGGAATTCACGCACCACATCCACGTAGTA
GAATACATGACCATCGATAAAGACGGGAGGATGGAGTCTTTGTTAGAAAA
AGAGGTGACGGGGAAGGAAGTGCTGCACGTAGAGTGGGAAGGGGAAAGCA
ACAGGGGAAAGGAGGAGGGAAGGAAAGGAGGAGGAGGAGAAGAAGGAGGA
TGGGGACGCGGGGGTACTGCGCATCGGGAGAGGATTGAATACTCGTTCAG
GGAAATAATGGATGGAGGAGTGGTGGTGGAGGAAGAATGTGGAAGGGAGG
AGTATGTGCACCTAGCCAGAAGAAGGGAAAGCGGGACACATGAAGTGGGC
TTAGAAGGCGAGGAGGAGGGGGAGGAGGAGGAAGAGGAGTGGGAGCGGAT
GGAAAGCTCGTTGCCGGCGAGGTATTTTAATACGGAGGAAGGGAAAGGGG
GAAGAGGAGAGGACGAGTGGAAGAGGAGAAGAAGGGGAGATGAAGGAGGA
GGAGGAGAAGAGCGGCCTGAGGAGCAGCAGGAGGGCGGGAGGGAGGGAGG
GGAGGAAGGCGGGTTGCGGCAAGGAGAGAGTGTAAGACGGCCATCACCTC
CACCGGGGGTAGAATCATATCGACCGCAGACGATAGTGACAGAAGGGGGA
TTCAGGATGAAATTGGTGCATAAACAGGGGCATCAGTGGTGGAAGACAGA
ACGGGAGGAGGAAGAGGGGGAGAGAGAGGGGGAGGAAGGGGCGTCGTGTG
GGGGGCAGTTGGGGAGGGAGATAAGGAAGCAGTCGAAGGGGAAGAGTTGA

Synonyms

Publications