NO18G02120.1, NO18G02120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G02120.1
Unique NameNO18G02120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1492
Alignment locationchr18:673586..675257 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:673586..675257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G02120.1 vs.
Match: EWM23404.1 (exocyst complex component 7-like protein [Nannochloropsis gaditana])

HSP 1 Score: 325.1 bits (832), Expect = 3.300e-85
Identity = 205/444 (46.17%), Postives = 275/444 (61.94%), Query Frame = 0 
Query:    1 MKAEMPAFEKHLRAISDCTLSSSSSSSSSIYSSGGSGGRSAATVATVAASHCHGRPTS-SLSLHPMSRAFRSSTPPPSSSSSSSSSSSSSSSSTTSSSTSTSTIPSLENIRKLYMHLCRLAISSLSSYADDVLTDSTSPKNLPINGTVHAITSNTLRSLKRIMVYEDMFDELAATGVVPLLPWETVEDRAAIMMGKEE--EENGEEEGRETQMRLYTNHLFFSLLKNLRCKAEAYGKGGMEGGMDSYSAAGRPHLFLMNNANYMTLTILGGGA--KSPL---SSLFLSSPGGLKRVSSVDLTSVLSDTFLEMLVAVVNESQKKFTALVWGALAEPMSDEKTSMALEYVKGTQALTFESGRLVKAKFAAFNKAMEEIYTHQRGFSVPDRGLREKLREEAKTTLLPSYTAFYDKFKGIQFSKKHMEQYLRFSPETVAKMVEELYSG 437
            M+ +MPAFE+    ++    S  S   +S+     S         T    H   RP+S SLSL P+S+AF + + P  +   +S   SS               P L ++  LY H+CRL I+ L ++ DDVL DS S  NLP N +VH +TSNTLR+ KRI+ Y ++F+ L   G + LLPWE+ EDRAA+  GKEE  E++  EE +ET +R+Y + LF +LLKN++ K EAY K  M+GG+D YSAAG+P +FLMNNA+YM  TI    +  ++PL   +  F   P G     +V LTSV+S+ F++ L  V N+S+ KFTA VW  LAE  +++K+   +E   G   LTFE GRLVKA+F+AFN AM+EIY  Q+ F + D GLR +LREEAK   LP YT FYDKF G QFSKKHM+QYLRFSP TV  M++ELY+G
Sbjct:  397 MEHQMPAFEQAFANVTKHASSPGSPVPTSLREIPAS---------TTVKPHHRARPSSTSLSLRPLSKAFAAVSHPKGNILPASPLDSS---------------PPLAHVHLLYRHVCRLTITHLQTFLDDVLNDSISSHNLPRNASVHVVTSNTLRTFKRIIAYHEIFEHLPLLGGLALLPWESEEDRAALTRGKEEAEEQSTGEEQQETHLRIYAHQLFMNLLKNIQGKTEAYHK--MDGGVDKYSAAGQPLVFLMNNAHYMVSTIEASSSLEEAPLVRTAPTFSWCPSG-----TVSLTSVVSEAFMDRLRTVTNDSRTKFTASVWADLAEVTTNDKSLPDVENTSGGHQLTFEGGRLVKARFSAFNTAMDEIYNTQKSFLILDAGLRMQLREEAKAAFLPPYTTFYDKFSGTQFSKKHMDQYLRFSPATVKSMIDELYAG 809
The following BLAST results are available for this feature:
BLAST of NO18G02120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23404.13.300e-8546.17exocyst complex component 7-like protein [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02120NO18G02120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G02120.1NO18G02120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G02120.1.cds1NO18G02120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02120.1.cds2NO18G02120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G02120.1 ID=NO18G02120.1|Name=NO18G02120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1492bp
ATGAAGGCCGAGATGCCCGCTTTTGAAAAACACCTAAGGGCGATTAGTGA
CTGTACCTTGAGCAGCAGCAGCAGCAGCAGCAGCAGCATTTACAGCAGCG
GTGGTAGTGGTGGGAGGAGTGCTGCTACTGTTGCTACTGTGGCTGCTTCT
CACTGTCACGGCCGCCCGACATCTTCCCTCTCCCTTCATCCCATGTCAAG
GGCCTTCCGCAGTAGCACCCCTCCTCCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCTTCTACCACCTCTTCCTCCACGTCAACC
TCTACCATCCCTTCTCTCGAGAACATACGCAAGCTGTACATGCACCTGTG
TCGGCTCGCCATATCCTCTCTCTCCTCCTATGCCGACGACGTCCTCACCG
ATTCCACCTCCCCCAAAAATTTGCCCATCAATGGCACGGTGCACGCGATC
ACCAGCAACACTCTCCGTTCTTTGAAGCGGATCATGGTCTACGAAGACAT
GTTCGACGAGCTTGCTGCCACGGGCGTCGTGCCCCTCCTCCCGTGGGAAA
CAGTCGAAGACCGCGCAGCCATCATGATGGGAAAGGAAGAGGAGGAGAAC
GGGGAGGAGGAAGGGCGAGAAACGCAAATGCGTCTATATACCAATCACTT
ATTCTTCAGCTTGTTGAAAAATTTGCGATGCAAGGCCGAAGCATATGGAA
AGGGAGGGATGGAAGGAGGGATGGATAGCTACAGTGCTGCAGGCCGTCCT
CACCTCTTCCTCATGAACAACGCCAATTATATGACCCTCACTATCCTTGG
AGGGGGGGCAAAGTCCCCTCTCTCTTCCTTGTTCTTATCCTCACCTGGAG
GGTTGAAAAGGGTCTCATCTGTAGATTTAACTAGTGTGTTGAGCGACACA
TTCCTAGAGATGCTGGTCGCTGTGGTGAATGAGAGTCAGAAGAAATTTAC
TGCCTTGGTGTGGGGGGCTTTGGCCGAGCCTATGAGCGATGAGAAGACTT
CGATGGCATTGGAGTATGTGAAAGGGACACAGGCCTTGACGTTTGAGAGC
GGACGCTTGGTCAAAGCGAAATTTGCAGCCTTTAACAAGGCGATGGAAGA
GATCTATACACACCAAAGAGGATTCTCCGTGCCTGACAGGGGTCTAAGGG
AGAAATTGAGGGAAGAGGCGAAGACGACATTGCTGCCTTCCTATACGGCT
TTTTATGATAAGTTCAAGGGCATCCAATTCAGTAAGAAGCATATGGAGCA
GTACTTGAGGTTTTCCCCCGAGACGGTGGCGAAGATGGTGGAGGAGTTGT
ATTCAGGGTAGATTAAAAAGGAGGAGGGTGAGGAAAAGAGGGGGGAGTGG
GAAGAAGGGAGCTAAGGTTGAACCGAAAGAAGACACATTAGACTTGTAAA
AAGAAAGACTGAATCAAAGGCAAATCAAGCTGTACACTTTTGTTGCTCTA
TCTCATTTACGTGCCGAGATTCATGATCGCTGACAACAGCGA
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protein sequence of NO18G02120.1

>NO18G02120.1-protein ID=NO18G02120.1-protein|Name=NO18G02120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MKAEMPAFEKHLRAISDCTLSSSSSSSSSIYSSGGSGGRSAATVATVAAS
HCHGRPTSSLSLHPMSRAFRSSTPPPSSSSSSSSSSSSSSSSTTSSSTST
STIPSLENIRKLYMHLCRLAISSLSSYADDVLTDSTSPKNLPINGTVHAI
TSNTLRSLKRIMVYEDMFDELAATGVVPLLPWETVEDRAAIMMGKEEEEN
GEEEGRETQMRLYTNHLFFSLLKNLRCKAEAYGKGGMEGGMDSYSAAGRP
HLFLMNNANYMTLTILGGGAKSPLSSLFLSSPGGLKRVSSVDLTSVLSDT
FLEMLVAVVNESQKKFTALVWGALAEPMSDEKTSMALEYVKGTQALTFES
GRLVKAKFAAFNKAMEEIYTHQRGFSVPDRGLREKLREEAKTTLLPSYTA
FYDKFKGIQFSKKHMEQYLRFSPETVAKMVEELYSG*
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mRNA from alignment at chr18:673586..675257+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02120.1 ID=NO18G02120.1|Name=NO18G02120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1672bp|location=Sequence derived from alignment at chr18:673586..675257+ (Nannochloropsis oceanica)
ATGAAGGCCGAGATGCCCGCTTTTGAAAAACACCTAAGGGCGATTAGTGA
CTGTACCTTGAGCAGCAGCAGCAGCAGCAGCAGCAGCATTTACAGCAGCG
GTGGTAGTGGTGGGAGGAGTGCTGCTACTGTTGCTACTGTGGCTGCTTCT
CACTGTCACGGCCGCCCGACATCTTCCCTCTCCCTTCATCCCATGTCAAG
GGCCTTCCGCAGTAGCACCCCTCCTCCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCTTCTACCACCTCTTCCTCCACGTCAACC
TCTACCATCCCTTCTCTCGAGAACATACGCAAGCTGTACATGCACCTGTG
TCGGCTCGCCATATCCTCTCTCTCCTCCTATGCCGACGACGTCCTCACCG
ATTCCACCTCCCCCAAAAATTTGCCCATCAATGGCACGGTGCACGCGATC
ACCAGCAACACTCTCCGTTCTTTGAAGGTACGTCTACGTCCCTCTCTCCC
TCCCTGCTTCTCCTCCCTCCCCTTCTCCCCCCCGCCTGCACGCACTCAGC
TACCTCCCCTCCCTCCTTCCCTCTCCTCTCTTCCCTCCTTCCCTCCCTCC
TTCCCCCCCTCCTTCCCTCCCACCTCTCATCCCTTTTTCCCTTCCCCCTT
CTTTCAGCGGATCATGGTCTACGAAGACATGTTCGACGAGCTTGCTGCCA
CGGGCGTCGTGCCCCTCCTCCCGTGGGAAACAGTCGAAGACCGCGCAGCC
ATCATGATGGGAAAGGAAGAGGAGGAGAACGGGGAGGAGGAAGGGCGAGA
AACGCAAATGCGTCTATATACCAATCACTTATTCTTCAGCTTGTTGAAAA
ATTTGCGATGCAAGGCCGAAGCATATGGAAAGGGAGGGATGGAAGGAGGG
ATGGATAGCTACAGTGCTGCAGGCCGTCCTCACCTCTTCCTCATGAACAA
CGCCAATTATATGACCCTCACTATCCTTGGAGGGGGGGCAAAGTCCCCTC
TCTCTTCCTTGTTCTTATCCTCACCTGGAGGGTTGAAAAGGGTCTCATCT
GTAGATTTAACTAGTGTGTTGAGCGACACATTCCTAGAGATGCTGGTCGC
TGTGGTGAATGAGAGTCAGAAGAAATTTACTGCCTTGGTGTGGGGGGCTT
TGGCCGAGCCTATGAGCGATGAGAAGACTTCGATGGCATTGGAGTATGTG
AAAGGGACACAGGCCTTGACGTTTGAGAGCGGACGCTTGGTCAAAGCGAA
ATTTGCAGCCTTTAACAAGGCGATGGAAGAGATCTATACACACCAAAGAG
GATTCTCCGTGCCTGACAGGGGTCTAAGGGAGAAATTGAGGGAAGAGGCG
AAGACGACATTGCTGCCTTCCTATACGGCTTTTTATGATAAGTTCAAGGG
CATCCAATTCAGTAAGAAGCATATGGAGCAGTACTTGAGGTTTTCCCCCG
AGACGGTGGCGAAGATGGTGGAGGAGTTGTATTCAGGGTAGATTAAAAAG
GAGGAGGGTGAGGAAAAGAGGGGGGAGTGGGAAGAAGGGAGCTAAGGTTG
AACCGAAAGAAGACACATTAGACTTGTAAAAAGAAAGACTGAATCAAAGG
CAAATCAAGCTGTACACTTTTGTTGCTCTATCTCATTTACGTGCCGAGAT
TCATGATCGCTGACAACAGCGA
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Coding sequence (CDS) from alignment at chr18:673586..675257+

>NO18G02120.1 ID=NO18G02120.1|Name=NO18G02120.1|organism=Nannochloropsis oceanica|type=CDS|length=1311bp|location=Sequence derived from alignment at chr18:673586..675257+ (Nannochloropsis oceanica)
ATGAAGGCCGAGATGCCCGCTTTTGAAAAACACCTAAGGGCGATTAGTGA
CTGTACCTTGAGCAGCAGCAGCAGCAGCAGCAGCAGCATTTACAGCAGCG
GTGGTAGTGGTGGGAGGAGTGCTGCTACTGTTGCTACTGTGGCTGCTTCT
CACTGTCACGGCCGCCCGACATCTTCCCTCTCCCTTCATCCCATGTCAAG
GGCCTTCCGCAGTAGCACCCCTCCTCCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCTTCTACCACCTCTTCCTCCACGTCAACC
TCTACCATCCCTTCTCTCGAGAACATACGCAAGCTGTACATGCACCTGTG
TCGGCTCGCCATATCCTCTCTCTCCTCCTATGCCGACGACGTCCTCACCG
ATTCCACCTCCCCCAAAAATTTGCCCATCAATGGCACGGTGCACGCGATC
ACCAGCAACACTCTCCGTTCTTTGAAGCGGATCATGGTCTACGAAGACAT
GTTCGACGAGCTTGCTGCCACGGGCGTCGTGCCCCTCCTCCCGTGGGAAA
CAGTCGAAGACCGCGCAGCCATCATGATGGGAAAGGAAGAGGAGGAGAAC
GGGGAGGAGGAAGGGCGAGAAACGCAAATGCGTCTATATACCAATCACTT
ATTCTTCAGCTTGTTGAAAAATTTGCGATGCAAGGCCGAAGCATATGGAA
AGGGAGGGATGGAAGGAGGGATGGATAGCTACAGTGCTGCAGGCCGTCCT
CACCTCTTCCTCATGAACAACGCCAATTATATGACCCTCACTATCCTTGG
AGGGGGGGCAAAGTCCCCTCTCTCTTCCTTGTTCTTATCCTCACCTGGAG
GGTTGAAAAGGGTCTCATCTGTAGATTTAACTAGTGTGTTGAGCGACACA
TTCCTAGAGATGCTGGTCGCTGTGGTGAATGAGAGTCAGAAGAAATTTAC
TGCCTTGGTGTGGGGGGCTTTGGCCGAGCCTATGAGCGATGAGAAGACTT
CGATGGCATTGGAGTATGTGAAAGGGACACAGGCCTTGACGTTTGAGAGC
GGACGCTTGGTCAAAGCGAAATTTGCAGCCTTTAACAAGGCGATGGAAGA
GATCTATACACACCAAAGAGGATTCTCCGTGCCTGACAGGGGTCTAAGGG
AGAAATTGAGGGAAGAGGCGAAGACGACATTGCTGCCTTCCTATACGGCT
TTTTATGATAAGTTCAAGGGCATCCAATTCAGTAAGAAGCATATGGAGCA
GTACTTGAGGTTTTCCCCCGAGACGGTGGCGAAGATGGTGGAGGAGTTGT
ATTCAGGGTAG
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Synonyms
Publications