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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr18 | genome | chr18:599046..601657 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G01950.1 vs.
Match: EWM23398.1 (glycerol-3-phosphate mitochondrial precursor [Nannochloropsis gaditana]) HSP 1 Score: 1103.6 bits (2853), Expect = 0.000e+0 Identity = 558/665 (83.91%), Postives = 590/665 (88.72%), Query Frame = 0
Query: 1 MTLPPQLALLGMAASLTVADRLLSGPGSSNKDKLQQQQQQQQQQQQPHLPLAARTAGCKETHSNKREQSPAEQLEDMRTTPIKCRDGTLVYPYSLPTRDDQLGRLKKESYDVLVIGGGCVGSGVALDAQVRGLKTAMVEADDFSAGTSGRSTKLIHGGIRYLETAFWKLDYGSFTLVQEALEERAHMLNAAPYMNSPLPIMIPIYKWWEVPYFWAGAKAYDLVASRQKSVPSSHFMDADEALFQFPMLRGNGLKGAIIYYDGQMNDTRMGLTIALTAAQEGATIANRVEVVSLLKDPQTGVVSGARVRDKIKGDEWEIHAKVVVNATGVFADKIRKMDNPEAIELIEPAAGVHVMFPAHFSPAKMGLIVPKTTDGRVLFFLPWEGCTLAGTTDSHSTITMTPQPTAQEVNFIMQETNRYLTTNVSANDLIAAWSGLRPLVKDPEKIREGTAALSRNHVIEVSDSGKLITITGGKWTTYRRMAEDTVDRLLAERPELLVDGAVALNSSTWNMKLLGADRARIVCDQKFNKIGITLRNDYELPEDVAAHLVKSYGTRALQVAELVRTGYTDVKAGTRMKRLHMRYPFLEAEVVFAVEQEYALKPMDILARRTRLAFLDTEATATAIPRVVKLMGDLLGWSWRQRAAETAEAVAFLETMNVNKVALLK 666
M+L P LALLGMA SL VADRL SGPG ++ K HLP +R+A C E KRE SP EQLEDMRTTPIKCRDGTLVYPYSLPTRD QL RLKKE +DVLVIGGGCVGSGVALDAQ+RGLKTAMVEA+DFSAGTSGRSTKLIHGGIRYLETAFWKLDYGSF LVQEALEERAHMLNAAPYMNSPLPIMIPIYKWWEVPYFWAGAKAYDLVASRQKSVPSSH+MD DEALFQFPMLRG GLKGAIIYYDGQMNDTRMGLTIALTAAQEGA IANRVEVVSLLKDP TG V+GARV+D++ G EW+I AKVVVNATGVFADKIRK D+P+A+ELIEPAAGVHVMFPAHFSPAKMGLIVPKTTDGRVLFFLPWEGCTLAGTTDSHS ITM PQPTAQEVNFIMQETNRYLTTNV+A DLIAAWSGLRPLVKDPEKI+EGTAALSRNHVIEVS++GKLITITGGKWTTYRRMAEDTVDR+L E LL +G V+ +STWN KLLGADRA IVC QKFN+IGITLRNDYELPEDV+AHLVKSYGTRALQVAE VR GY D K G + KRLH RYPFLEAEV+FAV+QEYALKPMDILARRTRLAFLDTEA A+PRVVKLMGDLLGWSWRQR E AEA+AFLETMNV K ALLK
Sbjct: 1 MSLQPHLALLGMAGSLVVADRLRSGPGRKSRAK----------DSHRHLPPTSRSANC-EASGGKRELSPVEQLEDMRTTPIKCRDGTLVYPYSLPTRDAQLNRLKKEKFDVLVIGGGCVGSGVALDAQIRGLKTAMVEANDFSAGTSGRSTKLIHGGIRYLETAFWKLDYGSFALVQEALEERAHMLNAAPYMNSPLPIMIPIYKWWEVPYFWAGAKAYDLVASRQKSVPSSHYMDVDEALFQFPMLRGKGLKGAIIYYDGQMNDTRMGLTIALTAAQEGAAIANRVEVVSLLKDPGTGQVNGARVQDRLTGVEWDIAAKVVVNATGVFADKIRKFDDPKAVELIEPAAGVHVMFPAHFSPAKMGLIVPKTTDGRVLFFLPWEGCTLAGTTDSHSDITMHPQPTAQEVNFIMQETNRYLTTNVAAKDLIAAWSGLRPLVKDPEKIKEGTAALSRNHVIEVSETGKLITITGGKWTTYRRMAEDTVDRILQEHAGLLANGDVSPQASTWNRKLLGADRAGIVCAQKFNQIGITLRNDYELPEDVSAHLVKSYGTRALQVAEWVRAGYLDTKPG-KAKRLHSRYPFLEAEVIFAVDQEYALKPMDILARRTRLAFLDTEAARAAVPRVVKLMGDLLGWSWRQRTMEKAEALAFLETMNVEKTALLK 653
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G01950.1 ID=NO18G01950.1|Name=NO18G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2612bp
CGTGCAGCAACTCGACGCGGCAATAGCAGACCTGCTTGTTCGCAAGGCCT
GCCTGTCTCAGCCAGCATTATCCCTCGCGGGCTAACCCAAACCAATGTTT
TCCTTGCTATTTATTTCGTGTACGACTCGGTGCAATGTCTGCAGGTTGCT
ATGCGGCGGACGTCCCCGCAATTTCTTGACTGCCCGTGTTTTCGTCGCTC
TTTCTTTCAAAGCTCTTGCTTTTCGTCATCAACGCTGTCTCCACAACAAT
ACACCCCACACAAAAGACAGCGCACTCTTCAGGCAAGCAATCCATGACTT
TGCCACCGCAACTGGCCTTGCTTGGTATGGCGGCCTCCTTGACCGTGGCA
GACCGCCTTCTCTCCGGCCCCGGCAGCAGCAACAAGGACAAGCTACAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCGCACCTGCCCTTGGCTG
CGCGGACGGCTGGCTGCAAGGAGACACACAGCAACAAGCGCGAACAGTCT
CCGGCCGAGCAGCTGGAGGACATGCGGACCACGCCTATCAAATGCCGCGA
TGGCACCTTGGTCTACCCCTACTCCCTACCCACGCGTGACGACCAGCTGG
GCCGTCTGAAGAAGGAGAGCTACGACGTTCTGGTGATTGGCGGAGGATGC
GTCGGGTCCGGCGTAGCCTTGGACGCGCAAGTTCGCGGCTTGAAGACGGC
CATGGTGGAAGCGGACGATTTTTCGGCGGGTACGTCGGGGAGATCGACTA
AATTGATTCACGGAGGCATTCGGTACTTGGAGACGGCCTTTTGGAAGTTG
GACTACGGGTCTTTCACCCTCGTGCAAGAAGCGTTGGAGGAACGGGCACA
TATGTTGAATGCGGCGCCGTATATGAATTCGCCGTTGCCGATCATGATTC
CTATCTATAAGTGGTGGGAGGTGCCTTATTTTTGGGCAGGAGCCAAAGCT
TACGACCTGGTGGCAAGCCGACAGAAGAGTGTGCCGTCCTCTCATTTTAT
GGACGCGGATGAGGCGCTGTTCCAGTTCCCGATGCTCAGGGGGAATGGAT
TGAAGGGGGCAATTATTTATTATGACGGGCAGATGAACGACACGAGGATG
GGGTTGACTATTGCTCTGACAGCAGCGCAGGAGGGCGCCACGATCGCGAA
CCGTGTGGAGGTCGTCTCTCTCCTCAAAGATCCTCAAACTGGCGTCGTCT
CCGGGGCCCGGGTCCGGGACAAGATAAAGGGGGATGAATGGGAAATCCAT
GCCAAAGTCGTCGTGAACGCCACGGGGGTGTTCGCTGACAAAATTCGCAA
GATGGACAACCCGGAAGCGATCGAGCTTATCGAGCCCGCAGCAGGTGTCC
ACGTCATGTTTCCCGCCCACTTTTCGCCCGCCAAAATGGGGCTAATTGTT
CCAAAGACCACCGATGGTCGTGTCCTCTTTTTCCTGCCTTGGGAAGGCTG
CACTCTTGCCGGGACGACGGACTCACATTCGACCATAACTATGACGCCCC
AGCCGACCGCCCAAGAAGTCAATTTCATCATGCAAGAGACCAATCGCTAC
CTCACCACGAACGTCTCTGCTAACGACCTCATCGCTGCCTGGTCTGGCCT
CCGTCCCCTGGTCAAGGATCCTGAAAAGATCAGAGAGGGAACCGCGGCCT
TGTCGCGCAACCATGTAATCGAAGTGTCTGACAGCGGGAAATTAATAACC
ATCACAGGGGGGAAATGGACCACCTACAGGAGGATGGCTGAAGACACAGT
CGATCGCCTTCTTGCTGAGAGACCGGAGTTGTTGGTCGATGGCGCCGTGG
CCCTCAATTCCAGTACCTGGAACATGAAGCTCCTGGGGGCGGACAGGGCG
AGGATTGTGTGCGATCAGAAGTTCAATAAAATTGGGATTACTCTTAGGAA
TGACTATGAGCTGCCTGAGGACGTGGCAGCGCACCTCGTCAAGAGCTATG
GCACTCGGGCGTTGCAAGTGGCGGAGCTGGTGCGTACGGGGTATACAGAT
GTGAAGGCCGGGACGAGAATGAAGAGGTTGCACATGCGCTACCCTTTCTT
GGAGGCCGAAGTCGTGTTTGCTGTGGAGCAGGAATACGCCTTGAAGCCCA
TGGATATTTTGGCACGACGTACTCGGCTAGCTTTCCTTGATACGGAAGCA
ACGGCGACAGCAATCCCGCGGGTGGTGAAGCTGATGGGGGATCTACTAGG
ATGGTCTTGGAGGCAGAGGGCGGCGGAGACGGCGGAGGCGGTGGCCTTTT
TGGAGACGATGAATGTGAACAAGGTGGCGTTGTTGAAGAGCAATAAGAAG
AAATAATGGATGTGACAGAAGTAGGGAAGGGCAGAAGTTTATAGGTATGT
GCTAGATCAGCTTTGGAGAACGGGTGTAGATAAAAATGAGCAGAGGAGAG
TGTGTTTTGTTTGCTGGTGCGGGAACATGTTGCCGGCATTACTTCTAGAA
AAGAAGTAACATAAATTAGTTATGAAATAATTGAGTCGTGGTTCCTTTTT
CGAGATAAAGAAGACATCTTCGCCCGGGGACGAGGCCATGTCAACGCCCA
CTGCACGCTACGATGAAAGTAGAGTAAACACCAAAGCAGAAGGAAGTGCA
CGTAAGATGCAT back to topprotein sequence of NO18G01950.1 >NO18G01950.1-protein ID=NO18G01950.1-protein|Name=NO18G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=671bp
MTLPPQLALLGMAASLTVADRLLSGPGSSNKDKLQQQQQQQQQQQQPHLP
LAARTAGCKETHSNKREQSPAEQLEDMRTTPIKCRDGTLVYPYSLPTRDD
QLGRLKKESYDVLVIGGGCVGSGVALDAQVRGLKTAMVEADDFSAGTSGR
STKLIHGGIRYLETAFWKLDYGSFTLVQEALEERAHMLNAAPYMNSPLPI
MIPIYKWWEVPYFWAGAKAYDLVASRQKSVPSSHFMDADEALFQFPMLRG
NGLKGAIIYYDGQMNDTRMGLTIALTAAQEGATIANRVEVVSLLKDPQTG
VVSGARVRDKIKGDEWEIHAKVVVNATGVFADKIRKMDNPEAIELIEPAA
GVHVMFPAHFSPAKMGLIVPKTTDGRVLFFLPWEGCTLAGTTDSHSTITM
TPQPTAQEVNFIMQETNRYLTTNVSANDLIAAWSGLRPLVKDPEKIREGT
AALSRNHVIEVSDSGKLITITGGKWTTYRRMAEDTVDRLLAERPELLVDG
AVALNSSTWNMKLLGADRARIVCDQKFNKIGITLRNDYELPEDVAAHLVK
SYGTRALQVAELVRTGYTDVKAGTRMKRLHMRYPFLEAEVVFAVEQEYAL
KPMDILARRTRLAFLDTEATATAIPRVVKLMGDLLGWSWRQRAAETAEAV
AFLETMNVNKVALLKSNKKK* back to topmRNA from alignment at chr18:599046..601657+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G01950.1 ID=NO18G01950.1|Name=NO18G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2612bp|location=Sequence derived from alignment at chr18:599046..601657+ (Nannochloropsis oceanica)
CGTGCAGCAACTCGACGCGGCAATAGCAGACCTGCTTGTTCGCAAGGCCT
GCCTGTCTCAGCCAGCATTATCCCTCGCGGGCTAACCCAAACCAATGTTT
TCCTTGCTATTTATTTCGTGTACGACTCGGTGCAATGTCTGCAGGTTGCT
ATGCGGCGGACGTCCCCGCAATTTCTTGACTGCCCGTGTTTTCGTCGCTC
TTTCTTTCAAAGCTCTTGCTTTTCGTCATCAACGCTGTCTCCACAACAAT
ACACCCCACACAAAAGACAGCGCACTCTTCAGGCAAGCAATCCATGACTT
TGCCACCGCAACTGGCCTTGCTTGGTATGGCGGCCTCCTTGACCGTGGCA
GACCGCCTTCTCTCCGGCCCCGGCAGCAGCAACAAGGACAAGCTACAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCGCACCTGCCCTTGGCTG
CGCGGACGGCTGGCTGCAAGGAGACACACAGCAACAAGCGCGAACAGTCT
CCGGCCGAGCAGCTGGAGGACATGCGGACCACGCCTATCAAATGCCGCGA
TGGCACCTTGGTCTACCCCTACTCCCTACCCACGCGTGACGACCAGCTGG
GCCGTCTGAAGAAGGAGAGCTACGACGTTCTGGTGATTGGCGGAGGATGC
GTCGGGTCCGGCGTAGCCTTGGACGCGCAAGTTCGCGGCTTGAAGACGGC
CATGGTGGAAGCGGACGATTTTTCGGCGGGTACGTCGGGGAGATCGACTA
AATTGATTCACGGAGGCATTCGGTACTTGGAGACGGCCTTTTGGAAGTTG
GACTACGGGTCTTTCACCCTCGTGCAAGAAGCGTTGGAGGAACGGGCACA
TATGTTGAATGCGGCGCCGTATATGAATTCGCCGTTGCCGATCATGATTC
CTATCTATAAGTGGTGGGAGGTGCCTTATTTTTGGGCAGGAGCCAAAGCT
TACGACCTGGTGGCAAGCCGACAGAAGAGTGTGCCGTCCTCTCATTTTAT
GGACGCGGATGAGGCGCTGTTCCAGTTCCCGATGCTCAGGGGGAATGGAT
TGAAGGGGGCAATTATTTATTATGACGGGCAGATGAACGACACGAGGATG
GGGTTGACTATTGCTCTGACAGCAGCGCAGGAGGGCGCCACGATCGCGAA
CCGTGTGGAGGTCGTCTCTCTCCTCAAAGATCCTCAAACTGGCGTCGTCT
CCGGGGCCCGGGTCCGGGACAAGATAAAGGGGGATGAATGGGAAATCCAT
GCCAAAGTCGTCGTGAACGCCACGGGGGTGTTCGCTGACAAAATTCGCAA
GATGGACAACCCGGAAGCGATCGAGCTTATCGAGCCCGCAGCAGGTGTCC
ACGTCATGTTTCCCGCCCACTTTTCGCCCGCCAAAATGGGGCTAATTGTT
CCAAAGACCACCGATGGTCGTGTCCTCTTTTTCCTGCCTTGGGAAGGCTG
CACTCTTGCCGGGACGACGGACTCACATTCGACCATAACTATGACGCCCC
AGCCGACCGCCCAAGAAGTCAATTTCATCATGCAAGAGACCAATCGCTAC
CTCACCACGAACGTCTCTGCTAACGACCTCATCGCTGCCTGGTCTGGCCT
CCGTCCCCTGGTCAAGGATCCTGAAAAGATCAGAGAGGGAACCGCGGCCT
TGTCGCGCAACCATGTAATCGAAGTGTCTGACAGCGGGAAATTAATAACC
ATCACAGGGGGGAAATGGACCACCTACAGGAGGATGGCTGAAGACACAGT
CGATCGCCTTCTTGCTGAGAGACCGGAGTTGTTGGTCGATGGCGCCGTGG
CCCTCAATTCCAGTACCTGGAACATGAAGCTCCTGGGGGCGGACAGGGCG
AGGATTGTGTGCGATCAGAAGTTCAATAAAATTGGGATTACTCTTAGGAA
TGACTATGAGCTGCCTGAGGACGTGGCAGCGCACCTCGTCAAGAGCTATG
GCACTCGGGCGTTGCAAGTGGCGGAGCTGGTGCGTACGGGGTATACAGAT
GTGAAGGCCGGGACGAGAATGAAGAGGTTGCACATGCGCTACCCTTTCTT
GGAGGCCGAAGTCGTGTTTGCTGTGGAGCAGGAATACGCCTTGAAGCCCA
TGGATATTTTGGCACGACGTACTCGGCTAGCTTTCCTTGATACGGAAGCA
ACGGCGACAGCAATCCCGCGGGTGGTGAAGCTGATGGGGGATCTACTAGG
ATGGTCTTGGAGGCAGAGGGCGGCGGAGACGGCGGAGGCGGTGGCCTTTT
TGGAGACGATGAATGTGAACAAGGTGGCGTTGTTGAAGAGCAATAAGAAG
AAATAATGGATGTGACAGAAGTAGGGAAGGGCAGAAGTTTATAGGTATGT
GCTAGATCAGCTTTGGAGAACGGGTGTAGATAAAAATGAGCAGAGGAGAG
TGTGTTTTGTTTGCTGGTGCGGGAACATGTTGCCGGCATTACTTCTAGAA
AAGAAGTAACATAAATTAGTTATGAAATAATTGAGTCGTGGTTCCTTTTT
CGAGATAAAGAAGACATCTTCGCCCGGGGACGAGGCCATGTCAACGCCCA
CTGCACGCTACGATGAAAGTAGAGTAAACACCAAAGCAGAAGGAAGTGCA
CGTAAGATGCAT back to topCoding sequence (CDS) from alignment at chr18:599046..601657+ >NO18G01950.1 ID=NO18G01950.1|Name=NO18G01950.1|organism=Nannochloropsis oceanica|type=CDS|length=2013bp|location=Sequence derived from alignment at chr18:599046..601657+ (Nannochloropsis oceanica)
ATGACTTTGCCACCGCAACTGGCCTTGCTTGGTATGGCGGCCTCCTTGAC
CGTGGCAGACCGCCTTCTCTCCGGCCCCGGCAGCAGCAACAAGGACAAGC
TACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCGCACCTGCCC
TTGGCTGCGCGGACGGCTGGCTGCAAGGAGACACACAGCAACAAGCGCGA
ACAGTCTCCGGCCGAGCAGCTGGAGGACATGCGGACCACGCCTATCAAAT
GCCGCGATGGCACCTTGGTCTACCCCTACTCCCTACCCACGCGTGACGAC
CAGCTGGGCCGTCTGAAGAAGGAGAGCTACGACGTTCTGGTGATTGGCGG
AGGATGCGTCGGGTCCGGCGTAGCCTTGGACGCGCAAGTTCGCGGCTTGA
AGACGGCCATGGTGGAAGCGGACGATTTTTCGGCGGGTACGTCGGGGAGA
TCGACTAAATTGATTCACGGAGGCATTCGGTACTTGGAGACGGCCTTTTG
GAAGTTGGACTACGGGTCTTTCACCCTCGTGCAAGAAGCGTTGGAGGAAC
GGGCACATATGTTGAATGCGGCGCCGTATATGAATTCGCCGTTGCCGATC
ATGATTCCTATCTATAAGTGGTGGGAGGTGCCTTATTTTTGGGCAGGAGC
CAAAGCTTACGACCTGGTGGCAAGCCGACAGAAGAGTGTGCCGTCCTCTC
ATTTTATGGACGCGGATGAGGCGCTGTTCCAGTTCCCGATGCTCAGGGGG
AATGGATTGAAGGGGGCAATTATTTATTATGACGGGCAGATGAACGACAC
GAGGATGGGGTTGACTATTGCTCTGACAGCAGCGCAGGAGGGCGCCACGA
TCGCGAACCGTGTGGAGGTCGTCTCTCTCCTCAAAGATCCTCAAACTGGC
GTCGTCTCCGGGGCCCGGGTCCGGGACAAGATAAAGGGGGATGAATGGGA
AATCCATGCCAAAGTCGTCGTGAACGCCACGGGGGTGTTCGCTGACAAAA
TTCGCAAGATGGACAACCCGGAAGCGATCGAGCTTATCGAGCCCGCAGCA
GGTGTCCACGTCATGTTTCCCGCCCACTTTTCGCCCGCCAAAATGGGGCT
AATTGTTCCAAAGACCACCGATGGTCGTGTCCTCTTTTTCCTGCCTTGGG
AAGGCTGCACTCTTGCCGGGACGACGGACTCACATTCGACCATAACTATG
ACGCCCCAGCCGACCGCCCAAGAAGTCAATTTCATCATGCAAGAGACCAA
TCGCTACCTCACCACGAACGTCTCTGCTAACGACCTCATCGCTGCCTGGT
CTGGCCTCCGTCCCCTGGTCAAGGATCCTGAAAAGATCAGAGAGGGAACC
GCGGCCTTGTCGCGCAACCATGTAATCGAAGTGTCTGACAGCGGGAAATT
AATAACCATCACAGGGGGGAAATGGACCACCTACAGGAGGATGGCTGAAG
ACACAGTCGATCGCCTTCTTGCTGAGAGACCGGAGTTGTTGGTCGATGGC
GCCGTGGCCCTCAATTCCAGTACCTGGAACATGAAGCTCCTGGGGGCGGA
CAGGGCGAGGATTGTGTGCGATCAGAAGTTCAATAAAATTGGGATTACTC
TTAGGAATGACTATGAGCTGCCTGAGGACGTGGCAGCGCACCTCGTCAAG
AGCTATGGCACTCGGGCGTTGCAAGTGGCGGAGCTGGTGCGTACGGGGTA
TACAGATGTGAAGGCCGGGACGAGAATGAAGAGGTTGCACATGCGCTACC
CTTTCTTGGAGGCCGAAGTCGTGTTTGCTGTGGAGCAGGAATACGCCTTG
AAGCCCATGGATATTTTGGCACGACGTACTCGGCTAGCTTTCCTTGATAC
GGAAGCAACGGCGACAGCAATCCCGCGGGTGGTGAAGCTGATGGGGGATC
TACTAGGATGGTCTTGGAGGCAGAGGGCGGCGGAGACGGCGGAGGCGGTG
GCCTTTTTGGAGACGATGAATGTGAACAAGGTGGCGTTGTTGAAGAGCAA
TAAGAAGAAATAA back to top
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