NO18G01650.1, NO18G01650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01650.1
Unique NameNO18G01650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1789
Alignment locationchr18:529751..531539 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:529751..531539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01650.1 vs.
Match: EWM23368.1 (WD40 repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 657.1 bits (1694), Expect = 4.300e-185
Identity = 344/509 (67.58%), Postives = 396/509 (77.80%), Query Frame = 0 
Query:   15 MDQDVGQGESPE----GAEPPLMISAEDVLEEFAVD-EAPPLESEDEGGDEGN---DNDGDAIEMPPGIRLVAEYEDGHMEELGGGRDERREPSV-DMAAQTFEDHTGPIYAVAIHPLNSRCMLTGGGDDRAFFWELTTTATAEAVASSSSSSTLASSVTELRNHEESVNAVGFSSDGTLAATGAYSGKIFVWDTKTRALLRTLEGPEDVEWLDWHPKGNLLLAGSKDGTVWMWLAATGECVHVFTGHEDGVTVGKWTDDGRLIVSGSVDGSVRVWGPKLGVCKHVFSGYGFHEGPITALTSHPTDAGLLLSGGMDGTARLMHAVNKRVLATMVHSEPKAVAEGGGG---------GGE---GPTPMEEE----DVEGEVGGKQEVEGNFSVETVGFSGRMNWCATGGMDGTLKIWDLGNFSCRHVCVHEGMPGVVKLKWHATLPLIYTAATDGVVRVWDARSGGLMLALTGHEDMILDFALHCGDDGMDVILTGSDDGKAKVFYSNAQ 499
            MDQD GQ  + E    G + PLMI AEDVLEEF VD EAPPLESEDE  DE     +++G+ I++P G+RLVAEY +G ME LG   +     SV DMA  +F  H GPIYAVAI+P +SR MLTGGGDDRAFFWE  TTA A +V +S+S   L + V E  +H ESVNAVG+S DG+LAATGAYSGK+ VWD KTR LL+TLEGPEDVEWL WHPKGNLLLAGSKDGTVWMWLA TGEC+ VF+GHED VTVG +T DG+L+VSGS+DGSVRVWGPK GVC+HVFSGY FHEGP+TAL SHP+D  LLLSGGMDGTARL+HA  KRVLA+MVHSEP AV  GGGG         GG+   G  PMEE+      E  V G++  EGN+SVETVGFS  +NWCATGGMDGT+KIWDLGNFSCRHVCVH G+PGV KL+WHA+LPLIYTAATDGV+R+WDARSG L+ A+TGHEDMILDFA+H  D  MDV+LTGSDDG AKVF+ + Q
Sbjct:    1 MDQD-GQNRTQETVLEGEDGPLMILAEDVLEEFEVDDEAPPLESEDESEDESEGIEEHEGN-IKLPSGMRLVAEYANGDMEVLGEEGEAGLPTSVADMAVLSFRGHKGPIYAVAINPRDSRSMLTGGGDDRAFFWE--TTAAAPSVNTSTSMPGLGA-VKESEDHGESVNAVGYSHDGSLAATGAYSGKVLVWDAKTRGLLQTLEGPEDVEWLQWHPKGNLLLAGSKDGTVWMWLAVTGECMRVFSGHEDAVTVGMFTSDGKLVVSGSMDGSVRVWGPKAGVCRHVFSGYAFHEGPVTALASHPSDGALLLSGGMDGTARLLHAAGKRVLASMVHSEPTAVGNGGGGASVNGRGKEGGKSEGGVAPMEEDGTGPGTEEGVAGEEVHEGNYSVETVGFSSVLNWCATGGMDGTMKIWDLGNFSCRHVCVHPGLPGVTKLQWHASLPLIYTAATDGVLRLWDARSGALLQAMTGHEDMILDFAVHSADGHMDVVLTGSDDGTAKVFWVDVQ 504
The following BLAST results are available for this feature:
BLAST of NO18G01650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23368.14.300e-18567.58WD40 repeat containing protein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01650NO18G01650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01650.1NO18G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01650.1.cds1NO18G01650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01650.1 ID=NO18G01650.1|Name=NO18G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1789bp
TTGCTTTGTTCCGCCAACCGTTCATCACCTTTTTGGCTTCAGATACTCTC
ACTTACAAGTCCATGCACGCACCATGTAACACAGCTACACACGACCTACG
CAATATGGACCAGGACGTTGGCCAAGGAGAGTCCCCGGAGGGCGCCGAGC
CACCTTTGATGATCTCTGCGGAGGACGTCCTGGAGGAGTTTGCAGTGGAT
GAGGCCCCACCGCTGGAGAGCGAGGACGAAGGAGGCGACGAGGGTAATGA
CAATGATGGAGATGCCATCGAGATGCCGCCGGGTATACGTTTGGTGGCAG
AATATGAGGACGGCCACATGGAGGAGTTGGGCGGGGGGAGGGATGAGAGG
CGGGAGCCGTCAGTAGACATGGCAGCGCAGACATTCGAAGACCACACAGG
CCCAATATACGCCGTGGCCATCCACCCGCTCAACTCTCGCTGTATGCTCA
CAGGCGGTGGGGACGACCGGGCATTTTTTTGGGAGTTAACTACGACAGCG
ACAGCTGAAGCTGTGGCGTCCTCATCATCATCTTCTACCCTTGCCTCCTC
TGTGACGGAGCTCCGCAACCACGAAGAAAGTGTGAATGCCGTCGGTTTCA
GCAGCGACGGTACATTGGCCGCTACTGGTGCATACAGTGGCAAAATTTTT
GTGTGGGACACAAAGACGCGGGCGTTGCTTCGTACCTTGGAAGGGCCGGA
GGATGTTGAGTGGCTGGATTGGCATCCCAAGGGGAACTTGTTGTTGGCAG
GAAGTAAGGACGGAACGGTTTGGATGTGGCTTGCAGCGACGGGAGAATGT
GTGCATGTGTTTACTGGACATGAGGATGGAGTGACTGTGGGGAAATGGAC
GGATGATGGTAGGTTGATTGTGTCGGGGTCGGTGGATGGGTCAGTGAGGG
TATGGGGGCCGAAGCTTGGTGTGTGTAAGCACGTCTTTTCTGGGTATGGC
TTCCATGAGGGTCCGATAACGGCCTTGACAAGTCATCCTACAGATGCAGG
CTTGTTGCTTTCGGGGGGGATGGATGGGACGGCGCGGTTGATGCATGCTG
TGAATAAGAGGGTGCTGGCGACAATGGTGCATAGTGAGCCCAAGGCAGTG
GCTGAAGGAGGTGGGGGGGGAGGAGAAGGACCGACCCCTATGGAGGAGGA
GGATGTTGAGGGGGAGGTGGGGGGGAAGCAGGAAGTTGAAGGGAATTTCT
CGGTGGAGACTGTGGGGTTTTCTGGGAGGATGAATTGGTGTGCAACAGGA
GGGATGGACGGGACCTTGAAAATTTGGGATTTGGGGAATTTTAGCTGTCG
GCATGTATGTGTGCATGAGGGAATGCCAGGGGTGGTGAAGTTGAAGTGGC
ATGCAACATTGCCTTTGATTTATACGGCGGCGACGGACGGGGTAGTGAGG
GTTTGGGACGCCAGGAGTGGGGGGTTAATGCTAGCGTTGACGGGGCACGA
GGATATGATTTTGGATTTTGCCTTACACTGCGGGGATGACGGAATGGACG
TGATTTTGACGGGGTCGGATGATGGGAAGGCGAAAGTGTTTTATTCGAAT
GCCCAGGAGTTGCAGCTCCTATCGGGGTCGTAGATGTGCTGCCTGTGGAG
GTGTTGGAAGTGCGGGGGCTGGGCATTTTGGGGCAAAGCCTCAAAGGATA
GTACGAAAAGGCATAAAAGAATGCGACAGCGTGCATATTAGATCAGATTT
CTAAGCTTCTGAAATGTTGCTGTTTTTGTTGGAGGATAGGAAAAGCGACA
TAGACCGTCATCGTTGAAACGGACCATCGTAACCGTGAG
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protein sequence of NO18G01650.1

>NO18G01650.1-protein ID=NO18G01650.1-protein|Name=NO18G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=507bp
MHAPCNTATHDLRNMDQDVGQGESPEGAEPPLMISAEDVLEEFAVDEAPP
LESEDEGGDEGNDNDGDAIEMPPGIRLVAEYEDGHMEELGGGRDERREPS
VDMAAQTFEDHTGPIYAVAIHPLNSRCMLTGGGDDRAFFWELTTTATAEA
VASSSSSSTLASSVTELRNHEESVNAVGFSSDGTLAATGAYSGKIFVWDT
KTRALLRTLEGPEDVEWLDWHPKGNLLLAGSKDGTVWMWLAATGECVHVF
TGHEDGVTVGKWTDDGRLIVSGSVDGSVRVWGPKLGVCKHVFSGYGFHEG
PITALTSHPTDAGLLLSGGMDGTARLMHAVNKRVLATMVHSEPKAVAEGG
GGGGEGPTPMEEEDVEGEVGGKQEVEGNFSVETVGFSGRMNWCATGGMDG
TLKIWDLGNFSCRHVCVHEGMPGVVKLKWHATLPLIYTAATDGVVRVWDA
RSGGLMLALTGHEDMILDFALHCGDDGMDVILTGSDDGKAKVFYSNAQEL
QLLSGS*
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mRNA from alignment at chr18:529751..531539+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01650.1 ID=NO18G01650.1|Name=NO18G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1789bp|location=Sequence derived from alignment at chr18:529751..531539+ (Nannochloropsis oceanica)
TTGCTTTGTTCCGCCAACCGTTCATCACCTTTTTGGCTTCAGATACTCTC
ACTTACAAGTCCATGCACGCACCATGTAACACAGCTACACACGACCTACG
CAATATGGACCAGGACGTTGGCCAAGGAGAGTCCCCGGAGGGCGCCGAGC
CACCTTTGATGATCTCTGCGGAGGACGTCCTGGAGGAGTTTGCAGTGGAT
GAGGCCCCACCGCTGGAGAGCGAGGACGAAGGAGGCGACGAGGGTAATGA
CAATGATGGAGATGCCATCGAGATGCCGCCGGGTATACGTTTGGTGGCAG
AATATGAGGACGGCCACATGGAGGAGTTGGGCGGGGGGAGGGATGAGAGG
CGGGAGCCGTCAGTAGACATGGCAGCGCAGACATTCGAAGACCACACAGG
CCCAATATACGCCGTGGCCATCCACCCGCTCAACTCTCGCTGTATGCTCA
CAGGCGGTGGGGACGACCGGGCATTTTTTTGGGAGTTAACTACGACAGCG
ACAGCTGAAGCTGTGGCGTCCTCATCATCATCTTCTACCCTTGCCTCCTC
TGTGACGGAGCTCCGCAACCACGAAGAAAGTGTGAATGCCGTCGGTTTCA
GCAGCGACGGTACATTGGCCGCTACTGGTGCATACAGTGGCAAAATTTTT
GTGTGGGACACAAAGACGCGGGCGTTGCTTCGTACCTTGGAAGGGCCGGA
GGATGTTGAGTGGCTGGATTGGCATCCCAAGGGGAACTTGTTGTTGGCAG
GAAGTAAGGACGGAACGGTTTGGATGTGGCTTGCAGCGACGGGAGAATGT
GTGCATGTGTTTACTGGACATGAGGATGGAGTGACTGTGGGGAAATGGAC
GGATGATGGTAGGTTGATTGTGTCGGGGTCGGTGGATGGGTCAGTGAGGG
TATGGGGGCCGAAGCTTGGTGTGTGTAAGCACGTCTTTTCTGGGTATGGC
TTCCATGAGGGTCCGATAACGGCCTTGACAAGTCATCCTACAGATGCAGG
CTTGTTGCTTTCGGGGGGGATGGATGGGACGGCGCGGTTGATGCATGCTG
TGAATAAGAGGGTGCTGGCGACAATGGTGCATAGTGAGCCCAAGGCAGTG
GCTGAAGGAGGTGGGGGGGGAGGAGAAGGACCGACCCCTATGGAGGAGGA
GGATGTTGAGGGGGAGGTGGGGGGGAAGCAGGAAGTTGAAGGGAATTTCT
CGGTGGAGACTGTGGGGTTTTCTGGGAGGATGAATTGGTGTGCAACAGGA
GGGATGGACGGGACCTTGAAAATTTGGGATTTGGGGAATTTTAGCTGTCG
GCATGTATGTGTGCATGAGGGAATGCCAGGGGTGGTGAAGTTGAAGTGGC
ATGCAACATTGCCTTTGATTTATACGGCGGCGACGGACGGGGTAGTGAGG
GTTTGGGACGCCAGGAGTGGGGGGTTAATGCTAGCGTTGACGGGGCACGA
GGATATGATTTTGGATTTTGCCTTACACTGCGGGGATGACGGAATGGACG
TGATTTTGACGGGGTCGGATGATGGGAAGGCGAAAGTGTTTTATTCGAAT
GCCCAGGAGTTGCAGCTCCTATCGGGGTCGTAGATGTGCTGCCTGTGGAG
GTGTTGGAAGTGCGGGGGCTGGGCATTTTGGGGCAAAGCCTCAAAGGATA
GTACGAAAAGGCATAAAAGAATGCGACAGCGTGCATATTAGATCAGATTT
CTAAGCTTCTGAAATGTTGCTGTTTTTGTTGGAGGATAGGAAAAGCGACA
TAGACCGTCATCGTTGAAACGGACCATCGTAACCGTGAG
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Coding sequence (CDS) from alignment at chr18:529751..531539+

>NO18G01650.1 ID=NO18G01650.1|Name=NO18G01650.1|organism=Nannochloropsis oceanica|type=CDS|length=1521bp|location=Sequence derived from alignment at chr18:529751..531539+ (Nannochloropsis oceanica)
ATGCACGCACCATGTAACACAGCTACACACGACCTACGCAATATGGACCA
GGACGTTGGCCAAGGAGAGTCCCCGGAGGGCGCCGAGCCACCTTTGATGA
TCTCTGCGGAGGACGTCCTGGAGGAGTTTGCAGTGGATGAGGCCCCACCG
CTGGAGAGCGAGGACGAAGGAGGCGACGAGGGTAATGACAATGATGGAGA
TGCCATCGAGATGCCGCCGGGTATACGTTTGGTGGCAGAATATGAGGACG
GCCACATGGAGGAGTTGGGCGGGGGGAGGGATGAGAGGCGGGAGCCGTCA
GTAGACATGGCAGCGCAGACATTCGAAGACCACACAGGCCCAATATACGC
CGTGGCCATCCACCCGCTCAACTCTCGCTGTATGCTCACAGGCGGTGGGG
ACGACCGGGCATTTTTTTGGGAGTTAACTACGACAGCGACAGCTGAAGCT
GTGGCGTCCTCATCATCATCTTCTACCCTTGCCTCCTCTGTGACGGAGCT
CCGCAACCACGAAGAAAGTGTGAATGCCGTCGGTTTCAGCAGCGACGGTA
CATTGGCCGCTACTGGTGCATACAGTGGCAAAATTTTTGTGTGGGACACA
AAGACGCGGGCGTTGCTTCGTACCTTGGAAGGGCCGGAGGATGTTGAGTG
GCTGGATTGGCATCCCAAGGGGAACTTGTTGTTGGCAGGAAGTAAGGACG
GAACGGTTTGGATGTGGCTTGCAGCGACGGGAGAATGTGTGCATGTGTTT
ACTGGACATGAGGATGGAGTGACTGTGGGGAAATGGACGGATGATGGTAG
GTTGATTGTGTCGGGGTCGGTGGATGGGTCAGTGAGGGTATGGGGGCCGA
AGCTTGGTGTGTGTAAGCACGTCTTTTCTGGGTATGGCTTCCATGAGGGT
CCGATAACGGCCTTGACAAGTCATCCTACAGATGCAGGCTTGTTGCTTTC
GGGGGGGATGGATGGGACGGCGCGGTTGATGCATGCTGTGAATAAGAGGG
TGCTGGCGACAATGGTGCATAGTGAGCCCAAGGCAGTGGCTGAAGGAGGT
GGGGGGGGAGGAGAAGGACCGACCCCTATGGAGGAGGAGGATGTTGAGGG
GGAGGTGGGGGGGAAGCAGGAAGTTGAAGGGAATTTCTCGGTGGAGACTG
TGGGGTTTTCTGGGAGGATGAATTGGTGTGCAACAGGAGGGATGGACGGG
ACCTTGAAAATTTGGGATTTGGGGAATTTTAGCTGTCGGCATGTATGTGT
GCATGAGGGAATGCCAGGGGTGGTGAAGTTGAAGTGGCATGCAACATTGC
CTTTGATTTATACGGCGGCGACGGACGGGGTAGTGAGGGTTTGGGACGCC
AGGAGTGGGGGGTTAATGCTAGCGTTGACGGGGCACGAGGATATGATTTT
GGATTTTGCCTTACACTGCGGGGATGACGGAATGGACGTGATTTTGACGG
GGTCGGATGATGGGAAGGCGAAAGTGTTTTATTCGAATGCCCAGGAGTTG
CAGCTCCTATCGGGGTCGTAG
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Synonyms
Publications