|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr18 | genome | chr18:521733..524574 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G01620.1 vs.
Match: EWM23365.1 (dynamin-like protein [Nannochloropsis gaditana]) HSP 1 Score: 650.2 bits (1676), Expect = 7.100e-183 Identity = 361/632 (57.12%), Postives = 450/632 (71.20%), Query Frame = 0
Query: 2 FRSGRSKSRGKSLDATPTD------LTSLETHLTEKTDLIDDIKKVLPITVQASGIVAIGMQGAGKSTVLESLTGVPLSRASGLRRPVKVKIVCDPTCVKEYVLVSGSDPLFKQNTKRLENAADLPAALVKLNEQMNVAGSFRP----ATGHFMEDKDEASDATIEEEE----RVYVEQPSRYMPDRHS--ESITESSAGLIYVRVVRPSGPTYTIIDFPAFSCPPDAAQEAYLRRVLEEDEDPNKLILAVLSIKDVFDHADIIHLAKRLDPASKRTIGVVTKAHLVTKDMGIVEKLQMNSNKPLVLPLGYVAVCAADPNNSAANRQEVMQFEHAFFSSNPLLKGLRQERWGLASLKSLVLNYQKNGITQRLPELSQAIRTEIEELSADLHQEQYHHQHAHQQKHMSKAQGHPVAPAVVFDQFEDVFSRLCSEMTFVMFDVKELADNSSSRQDRKLNLGPRYQLAVEGREAEARRALPSYTSAEVAEWLNKEMGEFRGVIANANYLMHPVFRKAIRELVFPVLRVYARGVIQDMDDMLQYTAQELVGERFRPYTRLLEALMRDVTQVQAAKKEEAERLVGRLLEAELNWNFVDEVDLAFISQQIEKNVAANERGESAGRMEADDMWDALGVE 618
F GR SR KS + P L SLE LTEKTDLIDD+KKVLPITVQA GIVAIGM+G+GKST+LE+L+GVPLS ASGL+RPV+VKIV DPTC KEYVLVSG+DPLFKQNT+RLE+A DLPA L L++ + R A + +ED + + EEEE R + + S Y S LIYVRVVRPSGPTYTI+DFPAFS PP A +EA L RVL ++ DP L+LAV+ +KDVFD A+++ +AKRLDP SK+TIGVVTK HLVTK MGIVEKLQMN +K + LPLGYVAVCAADP N A Q+V+ +E FF++NPLLKGL+ ERWGL SLKSLV++ Q N ITQR+P LSQAIR+EIE+LS Q + K+ G VF+ +DVFS+LCSEMT VMFD+ +LA+ SS+RQDRKLNLGPR+ +AVE REAEARRALP S+EVA+WL E+ EF GV +N++ +MHP+FRKA+REL FPVLR YA+ +I D+D+ML+Y A++++ ERF Y+RL+E+L RDVTQVQ KK EA+ L+ RLLEAELNW VD VD+A I ++ K++ ++ G+ R DMW GV+
Sbjct: 7 FSGGRRSSRRKSASSRPNSVDWCAPLASLEACLTEKTDLIDDMKKVLPITVQAPGIVAIGMRGSGKSTILEALSGVPLSHASGLQRPVRVKIVSDPTCTKEYVLVSGTDPLFKQNTRRLEHARDLPACLAALDKDVRTDEVGRTQGMKAETNPVEDAGTPTSISQEEEEAENIREELSEQSSYFTGLGGVGSSGPAEDLRLIYVRVVRPSGPTYTIMDFPAFSSPPRAEEEACLNRVLAKERDPASLVLAVMPVKDVFDRAEVLQIAKRLDPGSKQTIGVVTKMHLVTKGMGIVEKLQMNGSKAVALPLGYVAVCAADPGNPAGTYQDVLDYEAKFFTTNPLLKGLKPERWGLTSLKSLVIHCQTNSITQRIPGLSQAIRSEIEDLSRTCVQNDERIEQKATTPRKKKSLG-------VFENTKDVFSKLCSEMTLVMFDINDLANGSSTRQDRKLNLGPRFLIAVETREAEARRALPVCNSSEVADWLWGELQEFGGVASNSDSIMHPIFRKAVRELFFPVLRGYAKSIIDDLDEMLKYAAEKMLEERFGAYSRLVESLTRDVTQVQETKKREADALIARLLEAELNWVLVDAVDMAHIEKETAKDMENSKTGDRGER--RSDMWGMEGVD 629
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G01620.1 ID=NO18G01620.1|Name=NO18G01620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2842bp
ACAGTATACACAGTCCATTGCAATCTCACCATGTTTCGCTCGGGCAGGTC
AAAGTCGCGGGGCAAGTCCCTCGACGCCACTCCCACGGACTTGACCAGCC
TGGAGACGCACTTGACGGAAAAGACGGATCTGATCGACGACATTAAAAAG
GTACTCCCCATTACCGTGCAAGCATCGGGCATCGTGGCCATCGGCATGCA
GGGCGCGGGCAAGTCCACCGTCCTCGAATCCCTGACTGGCGTGCCTTTGT
CACGGGCAAGCGGGCTGCGACGCCCTGTCAAGGTCAAGATTGTCTGCGAT
CCCACCTGCGTCAAGGAATATGTCCTCGTCAGTGGCAGTGACCCTCTATT
CAAGCAAAATACGAAGCGTCTGGAAAACGCGGCTGATTTGCCTGCGGCGC
TTGTCAAACTCAACGAGCAGATGAACGTGGCTGGAAGCTTCCGACCGGCT
ACAGGTCATTTTATGGAAGACAAAGATGAGGCCTCGGATGCCACCATCGA
GGAAGAGGAGAGAGTGTACGTTGAGCAACCATCACGCTACATGCCAGATC
GCCATAGCGAGTCGATCACCGAGAGTAGTGCTGGGTTGATATATGTGCGC
GTCGTGCGTCCCTCCGGCCCCACCTACACCATCATTGACTTCCCTGCTTT
CAGCTGTCCGCCCGACGCTGCACAAGAAGCTTATCTTCGCCGCGTTTTAG
AGGAAGATGAGGATCCCAACAAGCTCATTTTGGCCGTTCTGTCAATCAAG
GACGTGTTTGACCATGCTGACATCATCCATCTCGCCAAGCGCCTCGACCC
TGCTTCCAAGCGCACTATCGGGGTCGTGACCAAAGCACACCTGGTCACCA
AAGACATGGGGATCGTCGAAAAGCTGCAAATGAACAGCAACAAGCCCCTT
GTCCTTCCACTGGGTTATGTGGCCGTCTGTGCCGCGGACCCCAACAACTC
TGCGGCTAATCGACAGGAAGTTATGCAATTTGAACATGCCTTCTTCTCGT
CCAACCCCTTGCTGAAAGGTCTACGACAGGAGAGGTGGGGATTGGCCTCT
CTCAAGTCGTTGGTATTGAATTATCAGAAGAATGGTATCACACAGCGCCT
TCCAGAGCTGAGCCAGGCGATACGAACAGAGATTGAGGAGTTGAGCGCAG
ACCTCCACCAGGAGCAGTACCATCACCAGCACGCGCACCAGCAGAAGCAC
ATGAGTAAGGCGCAAGGACATCCGGTGGCCCCTGCTGTTGTTTTTGATCA
GTTTGAGGACGTGTTTAGTAGGCTGTGTTCGGAGATGACCTTCGTTATGT
TTGATGTGAAGGAGTTGGCCGACAACAGTAGTTCGCGGCAAGACCGCAAG
CTTAATCTGGGGCCTCGATACCAACTTGCAGTGGAAGGGAGGGAGGCCGA
GGCCAGGAGGGCGTTGCCTAGCTATACATCTGCAGAGGTGGCTGAGTGGT
TGAATAAGGAGATGGGGGAGTTTAGGGGGGTGATTGCGAATGCGAATTAT
CTGATGCATCCTGTCTTTAGGAAGGCGATTCGTGAGTTGGTTTTCCCTGT
GTTGCGAGTGTATGCGAGGGGGGTGATCCAGGATATGGACGATATGCTTC
AGTACACGGCGCAGGAGCTGGTGGGGGAGAGGTTCAGGCCGTATACGCGG
CTGCTTGAGGCGTTGATGAGGGATGTGACGCAGGTACAGGCGGCGAAGAA
GGAAGAGGCAGAAAGGTTGGTGGGGAGGCTGTTAGAAGCGGAGCTGAATT
GGAATTTTGTCGATGAAGTGGATTTGGCGTTCATTTCACAACAAATTGAG
AAGAATGTGGCGGCCAACGAGAGAGGAGAGAGTGCGGGGAGGATGGAGGC
GGATGACATGTGGGATGCGCTCGGGGTGGAGGGGGGGCTGGAGGGGGGCG
GGGGGAGAGGGGGGGCTGGGGAGGAGCAAAAGTGGCAAGGTGTTTTTGCA
GTCGAGCCACTCGAGAGAGCTGCAGGTGATGCAGTGCACGCTTCATTACT
ATGTGCAGTTGCTACTGCGGCGTGTATTCTATGCGATTCCGACGAATACG
AGGAACGTTATGATCAATGAGTTCAGGCATGATCTGATGTCTGTCGTGGC
GGCCAAGTATAACGACGATATCAAGCTCCGCGCGCTCATGTCTGAAGAGC
TGTGGGCCGAACAGAGCCGCCAGCAGCGCGCTATGCGCAAGGCAGCGTTG
GAGGAGGTGATGGGCAGGTTGGACTTGCTGTCGTAGGTTGAGTCGGAGTT
AAGTGTTGGCAGGGATTCTCAGGATTGCACCGTTGGTATGTATGTATACT
TATTATCAACATAGATATTTTTATACAAGTAAGCCGACAGCAAGTCGATC
GACGATGGCGCATGCGCATGGTTTATTTCGGACGTCGATTAGAGAGGTTG
TGCAAGCCTGTGCTGCGTGCGTATGTCACATGGCGGCGTCTTTGATAGAT
TTGATGAAGAAGTTCAATACGTTGTAAGAAAGCGAAGAAACAAAGAGGAA
AATGCGAGGTAAAGGATGCGAAACAGAGACAATGATGAAGAGGGGGAGGT
CATGACAAAGAGTGGCATACAGCGGCAGACAGAAACAGACAGAGACAATG
TCAAAGCGGATGCAATGAAAAAGGGAGGCAGACAGGGATAGAAAGACGAT
TTATCCCCAAACGGATGATGAAGTAAAAAACAACAAGACGGCCTTCAAGA
GGGAAGAGACAGGATATATAACATGCACACACCAACTGGAAGAAGAATGT
AAACTATTATGCACCCTTACAACTGCCGACCGCGTATATAGTGTCGCTGC
TGTAAACAACAAAGAACTATATTTTCACTGCTCCAAACGTGG back to topprotein sequence of NO18G01620.1 >NO18G01620.1-protein ID=NO18G01620.1-protein|Name=NO18G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=680bp
MFRSGRSKSRGKSLDATPTDLTSLETHLTEKTDLIDDIKKVLPITVQASG
IVAIGMQGAGKSTVLESLTGVPLSRASGLRRPVKVKIVCDPTCVKEYVLV
SGSDPLFKQNTKRLENAADLPAALVKLNEQMNVAGSFRPATGHFMEDKDE
ASDATIEEEERVYVEQPSRYMPDRHSESITESSAGLIYVRVVRPSGPTYT
IIDFPAFSCPPDAAQEAYLRRVLEEDEDPNKLILAVLSIKDVFDHADIIH
LAKRLDPASKRTIGVVTKAHLVTKDMGIVEKLQMNSNKPLVLPLGYVAVC
AADPNNSAANRQEVMQFEHAFFSSNPLLKGLRQERWGLASLKSLVLNYQK
NGITQRLPELSQAIRTEIEELSADLHQEQYHHQHAHQQKHMSKAQGHPVA
PAVVFDQFEDVFSRLCSEMTFVMFDVKELADNSSSRQDRKLNLGPRYQLA
VEGREAEARRALPSYTSAEVAEWLNKEMGEFRGVIANANYLMHPVFRKAI
RELVFPVLRVYARGVIQDMDDMLQYTAQELVGERFRPYTRLLEALMRDVT
QVQAAKKEEAERLVGRLLEAELNWNFVDEVDLAFISQQIEKNVAANERGE
SAGRMEADDMWDALGVEGGLEGGGGRGGAGEEQKWQGVFAVEPLERAAGD
AVHASLLCAVATAACILCDSDEYEERYDQ* back to topmRNA from alignment at chr18:521733..524574+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G01620.1 ID=NO18G01620.1|Name=NO18G01620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2842bp|location=Sequence derived from alignment at chr18:521733..524574+ (Nannochloropsis oceanica)
ACAGTATACACAGTCCATTGCAATCTCACCATGTTTCGCTCGGGCAGGTC
AAAGTCGCGGGGCAAGTCCCTCGACGCCACTCCCACGGACTTGACCAGCC
TGGAGACGCACTTGACGGAAAAGACGGATCTGATCGACGACATTAAAAAG
GTACTCCCCATTACCGTGCAAGCATCGGGCATCGTGGCCATCGGCATGCA
GGGCGCGGGCAAGTCCACCGTCCTCGAATCCCTGACTGGCGTGCCTTTGT
CACGGGCAAGCGGGCTGCGACGCCCTGTCAAGGTCAAGATTGTCTGCGAT
CCCACCTGCGTCAAGGAATATGTCCTCGTCAGTGGCAGTGACCCTCTATT
CAAGCAAAATACGAAGCGTCTGGAAAACGCGGCTGATTTGCCTGCGGCGC
TTGTCAAACTCAACGAGCAGATGAACGTGGCTGGAAGCTTCCGACCGGCT
ACAGGTCATTTTATGGAAGACAAAGATGAGGCCTCGGATGCCACCATCGA
GGAAGAGGAGAGAGTGTACGTTGAGCAACCATCACGCTACATGCCAGATC
GCCATAGCGAGTCGATCACCGAGAGTAGTGCTGGGTTGATATATGTGCGC
GTCGTGCGTCCCTCCGGCCCCACCTACACCATCATTGACTTCCCTGCTTT
CAGCTGTCCGCCCGACGCTGCACAAGAAGCTTATCTTCGCCGCGTTTTAG
AGGAAGATGAGGATCCCAACAAGCTCATTTTGGCCGTTCTGTCAATCAAG
GACGTGTTTGACCATGCTGACATCATCCATCTCGCCAAGCGCCTCGACCC
TGCTTCCAAGCGCACTATCGGGGTCGTGACCAAAGCACACCTGGTCACCA
AAGACATGGGGATCGTCGAAAAGCTGCAAATGAACAGCAACAAGCCCCTT
GTCCTTCCACTGGGTTATGTGGCCGTCTGTGCCGCGGACCCCAACAACTC
TGCGGCTAATCGACAGGAAGTTATGCAATTTGAACATGCCTTCTTCTCGT
CCAACCCCTTGCTGAAAGGTCTACGACAGGAGAGGTGGGGATTGGCCTCT
CTCAAGTCGTTGGTATTGAATTATCAGAAGAATGGTATCACACAGCGCCT
TCCAGAGCTGAGCCAGGCGATACGAACAGAGATTGAGGAGTTGAGCGCAG
ACCTCCACCAGGAGCAGTACCATCACCAGCACGCGCACCAGCAGAAGCAC
ATGAGTAAGGCGCAAGGACATCCGGTGGCCCCTGCTGTTGTTTTTGATCA
GTTTGAGGACGTGTTTAGTAGGCTGTGTTCGGAGATGACCTTCGTTATGT
TTGATGTGAAGGAGTTGGCCGACAACAGTAGTTCGCGGCAAGACCGCAAG
CTTAATCTGGGGCCTCGATACCAACTTGCAGTGGAAGGGAGGGAGGCCGA
GGCCAGGAGGGCGTTGCCTAGCTATACATCTGCAGAGGTGGCTGAGTGGT
TGAATAAGGAGATGGGGGAGTTTAGGGGGGTGATTGCGAATGCGAATTAT
CTGATGCATCCTGTCTTTAGGAAGGCGATTCGTGAGTTGGTTTTCCCTGT
GTTGCGAGTGTATGCGAGGGGGGTGATCCAGGATATGGACGATATGCTTC
AGTACACGGCGCAGGAGCTGGTGGGGGAGAGGTTCAGGCCGTATACGCGG
CTGCTTGAGGCGTTGATGAGGGATGTGACGCAGGTACAGGCGGCGAAGAA
GGAAGAGGCAGAAAGGTTGGTGGGGAGGCTGTTAGAAGCGGAGCTGAATT
GGAATTTTGTCGATGAAGTGGATTTGGCGTTCATTTCACAACAAATTGAG
AAGAATGTGGCGGCCAACGAGAGAGGAGAGAGTGCGGGGAGGATGGAGGC
GGATGACATGTGGGATGCGCTCGGGGTGGAGGGGGGGCTGGAGGGGGGCG
GGGGGAGAGGGGGGGCTGGGGAGGAGCAAAAGTGGCAAGGTGTTTTTGCA
GTCGAGCCACTCGAGAGAGCTGCAGGTGATGCAGTGCACGCTTCATTACT
ATGTGCAGTTGCTACTGCGGCGTGTATTCTATGCGATTCCGACGAATACG
AGGAACGTTATGATCAATGAGTTCAGGCATGATCTGATGTCTGTCGTGGC
GGCCAAGTATAACGACGATATCAAGCTCCGCGCGCTCATGTCTGAAGAGC
TGTGGGCCGAACAGAGCCGCCAGCAGCGCGCTATGCGCAAGGCAGCGTTG
GAGGAGGTGATGGGCAGGTTGGACTTGCTGTCGTAGGTTGAGTCGGAGTT
AAGTGTTGGCAGGGATTCTCAGGATTGCACCGTTGGTATGTATGTATACT
TATTATCAACATAGATATTTTTATACAAGTAAGCCGACAGCAAGTCGATC
GACGATGGCGCATGCGCATGGTTTATTTCGGACGTCGATTAGAGAGGTTG
TGCAAGCCTGTGCTGCGTGCGTATGTCACATGGCGGCGTCTTTGATAGAT
TTGATGAAGAAGTTCAATACGTTGTAAGAAAGCGAAGAAACAAAGAGGAA
AATGCGAGGTAAAGGATGCGAAACAGAGACAATGATGAAGAGGGGGAGGT
CATGACAAAGAGTGGCATACAGCGGCAGACAGAAACAGACAGAGACAATG
TCAAAGCGGATGCAATGAAAAAGGGAGGCAGACAGGGATAGAAAGACGAT
TTATCCCCAAACGGATGATGAAGTAAAAAACAACAAGACGGCCTTCAAGA
GGGAAGAGACAGGATATATAACATGCACACACCAACTGGAAGAAGAATGT
AAACTATTATGCACCCTTACAACTGCCGACCGCGTATATAGTGTCGCTGC
TGTAAACAACAAAGAACTATATTTTCACTGCTCCAAACGTGG back to topCoding sequence (CDS) from alignment at chr18:521733..524574+ >NO18G01620.1 ID=NO18G01620.1|Name=NO18G01620.1|organism=Nannochloropsis oceanica|type=CDS|length=2040bp|location=Sequence derived from alignment at chr18:521733..524574+ (Nannochloropsis oceanica)
ATGTTTCGCTCGGGCAGGTCAAAGTCGCGGGGCAAGTCCCTCGACGCCAC
TCCCACGGACTTGACCAGCCTGGAGACGCACTTGACGGAAAAGACGGATC
TGATCGACGACATTAAAAAGGTACTCCCCATTACCGTGCAAGCATCGGGC
ATCGTGGCCATCGGCATGCAGGGCGCGGGCAAGTCCACCGTCCTCGAATC
CCTGACTGGCGTGCCTTTGTCACGGGCAAGCGGGCTGCGACGCCCTGTCA
AGGTCAAGATTGTCTGCGATCCCACCTGCGTCAAGGAATATGTCCTCGTC
AGTGGCAGTGACCCTCTATTCAAGCAAAATACGAAGCGTCTGGAAAACGC
GGCTGATTTGCCTGCGGCGCTTGTCAAACTCAACGAGCAGATGAACGTGG
CTGGAAGCTTCCGACCGGCTACAGGTCATTTTATGGAAGACAAAGATGAG
GCCTCGGATGCCACCATCGAGGAAGAGGAGAGAGTGTACGTTGAGCAACC
ATCACGCTACATGCCAGATCGCCATAGCGAGTCGATCACCGAGAGTAGTG
CTGGGTTGATATATGTGCGCGTCGTGCGTCCCTCCGGCCCCACCTACACC
ATCATTGACTTCCCTGCTTTCAGCTGTCCGCCCGACGCTGCACAAGAAGC
TTATCTTCGCCGCGTTTTAGAGGAAGATGAGGATCCCAACAAGCTCATTT
TGGCCGTTCTGTCAATCAAGGACGTGTTTGACCATGCTGACATCATCCAT
CTCGCCAAGCGCCTCGACCCTGCTTCCAAGCGCACTATCGGGGTCGTGAC
CAAAGCACACCTGGTCACCAAAGACATGGGGATCGTCGAAAAGCTGCAAA
TGAACAGCAACAAGCCCCTTGTCCTTCCACTGGGTTATGTGGCCGTCTGT
GCCGCGGACCCCAACAACTCTGCGGCTAATCGACAGGAAGTTATGCAATT
TGAACATGCCTTCTTCTCGTCCAACCCCTTGCTGAAAGGTCTACGACAGG
AGAGGTGGGGATTGGCCTCTCTCAAGTCGTTGGTATTGAATTATCAGAAG
AATGGTATCACACAGCGCCTTCCAGAGCTGAGCCAGGCGATACGAACAGA
GATTGAGGAGTTGAGCGCAGACCTCCACCAGGAGCAGTACCATCACCAGC
ACGCGCACCAGCAGAAGCACATGAGTAAGGCGCAAGGACATCCGGTGGCC
CCTGCTGTTGTTTTTGATCAGTTTGAGGACGTGTTTAGTAGGCTGTGTTC
GGAGATGACCTTCGTTATGTTTGATGTGAAGGAGTTGGCCGACAACAGTA
GTTCGCGGCAAGACCGCAAGCTTAATCTGGGGCCTCGATACCAACTTGCA
GTGGAAGGGAGGGAGGCCGAGGCCAGGAGGGCGTTGCCTAGCTATACATC
TGCAGAGGTGGCTGAGTGGTTGAATAAGGAGATGGGGGAGTTTAGGGGGG
TGATTGCGAATGCGAATTATCTGATGCATCCTGTCTTTAGGAAGGCGATT
CGTGAGTTGGTTTTCCCTGTGTTGCGAGTGTATGCGAGGGGGGTGATCCA
GGATATGGACGATATGCTTCAGTACACGGCGCAGGAGCTGGTGGGGGAGA
GGTTCAGGCCGTATACGCGGCTGCTTGAGGCGTTGATGAGGGATGTGACG
CAGGTACAGGCGGCGAAGAAGGAAGAGGCAGAAAGGTTGGTGGGGAGGCT
GTTAGAAGCGGAGCTGAATTGGAATTTTGTCGATGAAGTGGATTTGGCGT
TCATTTCACAACAAATTGAGAAGAATGTGGCGGCCAACGAGAGAGGAGAG
AGTGCGGGGAGGATGGAGGCGGATGACATGTGGGATGCGCTCGGGGTGGA
GGGGGGGCTGGAGGGGGGCGGGGGGAGAGGGGGGGCTGGGGAGGAGCAAA
AGTGGCAAGGTGTTTTTGCAGTCGAGCCACTCGAGAGAGCTGCAGGTGAT
GCAGTGCACGCTTCATTACTATGTGCAGTTGCTACTGCGGCGTGTATTCT
ATGCGATTCCGACGAATACGAGGAACGTTATGATCAATGA back to top
|