NO18G01560.1, NO18G01560.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G01560.1
Unique Name	NO18G01560.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2322
Alignment location	chr18:504675..506996 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:504675..506996 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO18G01560.1 vs.
Match: EWM23348.1 (Oxoglutarate/iron-dependent oxygenase [Nannochloropsis gaditana])

HSP 1 Score: 363.6 bits (932), Expect = 8.200e-97
Identity = 215/371 (57.95%), Postives = 256/371 (69.00%), Query Frame = 0

Query:   60 WTFVREMM---KDSWIAQTNAQLLTDIIPALEGGCIYLPGFLCAANDFSILKGLTRDLQYCPASK---EGGGFVTWSQHLKFENPGFSPTFQQLLARLDAYFDVEILATRLNFYRDGSDFKPFHHDSHAYGTNGKKEDFTMGASFGSTRKLAFRHEVSGQTFTIAQANGDIFAFDSEVNRAFTHGVPKIKGGAEKAGPRFSIIAWGRRRTLNERNSTVTARETDKGQRQEKQEGGREGGHRGYGGGGRHRQRKKEAGKEGGKE---EGDEVMPIGMDEVARLVEKMVMKADQKQAREALLSSSSHAGGG---GRGKDGGGGGSGGKSVGGEAAAMKENTTSENTSGSSSSSNISVMSIGRTRRAGRVQHSW 419
            W  + E+     DSWIAQT+ QLL D++PALEGGC+YLPGF+C   DFSILK LT DLQ+C  ++   EG   V WSQHLKFENP FS TF  +L +LD YFDVEILATRLNFYRDGSDFKPFHHDSHAYG+NGKKEDFT+G SFGSTR+L+FRHEVSGQTF+  Q NGD+FAFDS+VNRAFTHGVP++KG +EK GPRFSIIAWGRRRTLN  NS VTAR   +G         R G     G  G  R   K A K GG+E   +G+E  PIGM+EVAR+VE+MV+K ++K+A  A   S           RG  G G G GG   GG+AA  + +  S+   G  S++  +  +  R RR GRVQHSW
Sbjct:    8 WLMLEELAIIRPDSWIAQTDGQLLADMVPALEGGCVYLPGFICGPKDFSILKALTGDLQHCLDTRREEEGVRMVHWSQHLKFENPDFSHTFNGVLDQLDHYFDVEILATRLNFYRDGSDFKPFHHDSHAYGSNGKKEDFTVGVSFGSTRELSFRHEVSGQTFSFPQTNGDVFAFDSDVNRAFTHGVPRLKGRSEKVGPRFSIIAWGRRRTLNANNSAVTARRRVEGDPGRDTGDSRAGRVLAQGVQG-ERATSKCARKMGGEEKVGQGEET-PIGMEEVARMVEEMVLKEEEKEACRAPPLSRDEGRAARLIARGTAGKGEGRGGDE-GGDAAGQQTSNGSDG-KGELSATKSAGQTSRRPRRGGRVQHSW 374

The following BLAST results are available for this feature:

BLAST of NO18G01560.1 vs.

BLAST of NO18G01560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23348.1	8.200e-97	57.95	Oxoglutarate/iron-dependent oxygenase [Nannochloro...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G01560	NO18G01560	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G01560.1	NO18G01560.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G01560.1.cds1	NO18G01560.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:504675..506996-
coding sequence from alignment at chr18:504675..506996-

mRNA sequence

>NO18G01560.1 ID=NO18G01560.1|Name=NO18G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2322bp
GCATAAAGCTTTTTTTTCTAATTCAGATTATCATAATATTTACATTTTTA
ATTACTATGTGCTGATTCAATGATGACAAAATAGCAAATACACGAAGGAT
AGAAGAACGCGCGAAAACCTTGGGGGGGGAGGTTGGTATCTCGCCTTTTT
CCAGCCGCCTTGTCTTGCATCTTTACGCGTTCACTGCACCCAAAGTTTGT
ACTTGAGTCCCAATAGCTCGCTCTCAGGACCAGACGAGCGTAGAGAATAT
CCCGTACAAGGTGGAATCGGCGACCAATACGGCATTGCTTAGTTGTGGCG
CAACTGCTCGATCATGGAGCTGAAACGACGACCACTTCCTCTTCCTCCGT
CCCTTTCTCCGTCGCTCATACGCAGAGATGTGGTGCCGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGAGAATAAGAAGGGGAAGGAGGGG
TTTACGCAGTCCATCTTTTAGAGTCGGTGTTTGAATATGGCAAAGGAGAT
GACCGTTCATCGAGTAAGGACAATGTCTATGTGAGCTTGAAAGTGAGTCA
GCTATTCCGTGGCGAGTCTAAGCTTAACAATTCAGCCAGTTACAGGAATA
ATTTTGGAGAGTACAATGCTGAGGAATTGAGACACTGCCTAGGGGAACGC
ACGAACTCAAGCCCGCTTGGTGGCGGACATGTTTGAAAATTGGCGCGTCG
TCGCTGAATCCACCGAGCGTCTCAGAGGCGGAGGAGCGAAAGCACGGCGT
TGTCAGTTTTTCCCTTTCACACCACTCCTCAACACGCAGGACCGCTTCGA
GAGCGACCTACACGAGCCCAAAACTCGCAGCTCCATCCCAACCTCCAACC
AGCACTATGATCACCCCCGCTCCAGTAGCGACAAATGATGCCCAAGAGAC
GGAGAAGCTCCAAGATGCCCGTGTGGCGGCTCTACGCAAGGCCGTCATGA
GAACCGCCCCTTCTCCTTCGATCACAGCCAGCAGCAGCACGAACTTAAAC
AACGCCAACCCTTCCGTGGCCAAAAACCAAGCCTGGACCTTCGTCCGCGA
GATGATGAAAGACTCGTGGATTGCACAAACCAACGCCCAACTCCTGACTG
ACATCATTCCTGCCCTGGAAGGTGGTTGTATCTATCTGCCTGGATTTCTG
TGTGCAGCCAACGACTTCAGTATCCTCAAGGGTTTGACTCGCGACCTACA
GTATTGCCCGGCCTCCAAGGAAGGAGGTGGATTCGTCACTTGGAGCCAGC
ATCTCAAGTTCGAAAACCCTGGTTTTAGTCCCACCTTCCAACAGCTTCTG
GCTCGATTAGACGCGTATTTTGACGTGGAAATTCTTGCGACGCGTTTGAA
TTTCTACAGGGATGGAAGCGACTTTAAGCCTTTCCATCACGATTCACACG
CCTATGGCACTAATGGCAAGAAGGAGGATTTTACGATGGGTGCCTCCTTT
GGGAGCACGCGTAAACTAGCCTTTAGACATGAAGTGTCGGGACAGACTTT
CACGATCGCGCAGGCGAATGGTGATATTTTCGCTTTCGATTCGGAAGTAA
ATAGAGCGTTTACTCACGGGGTGCCCAAGATAAAGGGAGGTGCCGAGAAG
GCAGGTCCCAGGTTTTCCATCATTGCTTGGGGGAGGAGGCGGACATTGAA
TGAACGGAATTCGACAGTGACGGCCAGGGAGACCGATAAGGGCCAGCGGC
AGGAGAAGCAAGAGGGAGGGAGGGAAGGAGGCCACCGGGGGTATGGAGGG
GGAGGGAGGCATCGGCAGCGAAAGAAGGAGGCTGGGAAGGAGGGAGGGAA
GGAGGAGGGAGACGAGGTGATGCCAATCGGCATGGACGAGGTGGCGCGAT
TGGTGGAGAAAATGGTGATGAAGGCGGACCAAAAGCAAGCACGAGAAGCC
TTGCTGTCGTCGTCTTCTCACGCTGGTGGGGGAGGAAGAGGAAAGGATGG
AGGTGGAGGAGGAAGCGGCGGGAAATCAGTTGGCGGAGAGGCAGCGGCGA
TGAAAGAAAATACGACGAGTGAGAACACAAGCGGCAGCAGCAGCAGCAGT
AATATTAGCGTCATGTCGATAGGGCGCACCCGGAGAGCGGGTCGAGTTCA
GCACTCATGGACTTCATGATGAGATACATATATCAATAGAGATACAAAGC
ACAGATGTACAAATACGAGGAAATAGAAAAGTGTAAGGACAGCAACTGCT
GCACGACAAGAGTTTGCGCTATCACATGCATACTGCATTGAAAAGAGAAA
GATAAAGCATAGGCGCTAAAGGCGGCGAAAGGGTAGAGAGGTCCCGTAAG
TACCCTTGCCCGATTTTTAAAG

protein sequence of NO18G01560.1

>NO18G01560.1-protein ID=NO18G01560.1-protein|Name=NO18G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=421bp
MITPAPVATNDAQETEKLQDARVAALRKAVMRTAPSPSITASSSTNLNNA
NPSVAKNQAWTFVREMMKDSWIAQTNAQLLTDIIPALEGGCIYLPGFLCA
ANDFSILKGLTRDLQYCPASKEGGGFVTWSQHLKFENPGFSPTFQQLLAR
LDAYFDVEILATRLNFYRDGSDFKPFHHDSHAYGTNGKKEDFTMGASFGS
TRKLAFRHEVSGQTFTIAQANGDIFAFDSEVNRAFTHGVPKIKGGAEKAG
PRFSIIAWGRRRTLNERNSTVTARETDKGQRQEKQEGGREGGHRGYGGGG
RHRQRKKEAGKEGGKEEGDEVMPIGMDEVARLVEKMVMKADQKQAREALL
SSSSHAGGGGRGKDGGGGGSGGKSVGGEAAAMKENTTSENTSGSSSSSNI
SVMSIGRTRRAGRVQHSWTS*

mRNA from alignment at chr18:504675..506996-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G01560.1 ID=NO18G01560.1|Name=NO18G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2322bp|location=Sequence derived from alignment at chr18:504675..506996- (Nannochloropsis oceanica)
GCATAAAGCTTTTTTTTCTAATTCAGATTATCATAATATTTACATTTTTA
ATTACTATGTGCTGATTCAATGATGACAAAATAGCAAATACACGAAGGAT
AGAAGAACGCGCGAAAACCTTGGGGGGGGAGGTTGGTATCTCGCCTTTTT
CCAGCCGCCTTGTCTTGCATCTTTACGCGTTCACTGCACCCAAAGTTTGT
ACTTGAGTCCCAATAGCTCGCTCTCAGGACCAGACGAGCGTAGAGAATAT
CCCGTACAAGGTGGAATCGGCGACCAATACGGCATTGCTTAGTTGTGGCG
CAACTGCTCGATCATGGAGCTGAAACGACGACCACTTCCTCTTCCTCCGT
CCCTTTCTCCGTCGCTCATACGCAGAGATGTGGTGCCGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGAGAATAAGAAGGGGAAGGAGGGG
TTTACGCAGTCCATCTTTTAGAGTCGGTGTTTGAATATGGCAAAGGAGAT
GACCGTTCATCGAGTAAGGACAATGTCTATGTGAGCTTGAAAGTGAGTCA
GCTATTCCGTGGCGAGTCTAAGCTTAACAATTCAGCCAGTTACAGGAATA
ATTTTGGAGAGTACAATGCTGAGGAATTGAGACACTGCCTAGGGGAACGC
ACGAACTCAAGCCCGCTTGGTGGCGGACATGTTTGAAAATTGGCGCGTCG
TCGCTGAATCCACCGAGCGTCTCAGAGGCGGAGGAGCGAAAGCACGGCGT
TGTCAGTTTTTCCCTTTCACACCACTCCTCAACACGCAGGACCGCTTCGA
GAGCGACCTACACGAGCCCAAAACTCGCAGCTCCATCCCAACCTCCAACC
AGCACTATGATCACCCCCGCTCCAGTAGCGACAAATGATGCCCAAGAGAC
GGAGAAGCTCCAAGATGCCCGTGTGGCGGCTCTACGCAAGGCCGTCATGA
GAACCGCCCCTTCTCCTTCGATCACAGCCAGCAGCAGCACGAACTTAAAC
AACGCCAACCCTTCCGTGGCCAAAAACCAAGCCTGGACCTTCGTCCGCGA
GATGATGAAAGACTCGTGGATTGCACAAACCAACGCCCAACTCCTGACTG
ACATCATTCCTGCCCTGGAAGGTGGTTGTATCTATCTGCCTGGATTTCTG
TGTGCAGCCAACGACTTCAGTATCCTCAAGGGTTTGACTCGCGACCTACA
GTATTGCCCGGCCTCCAAGGAAGGAGGTGGATTCGTCACTTGGAGCCAGC
ATCTCAAGTTCGAAAACCCTGGTTTTAGTCCCACCTTCCAACAGCTTCTG
GCTCGATTAGACGCGTATTTTGACGTGGAAATTCTTGCGACGCGTTTGAA
TTTCTACAGGGATGGAAGCGACTTTAAGCCTTTCCATCACGATTCACACG
CCTATGGCACTAATGGCAAGAAGGAGGATTTTACGATGGGTGCCTCCTTT
GGGAGCACGCGTAAACTAGCCTTTAGACATGAAGTGTCGGGACAGACTTT
CACGATCGCGCAGGCGAATGGTGATATTTTCGCTTTCGATTCGGAAGTAA
ATAGAGCGTTTACTCACGGGGTGCCCAAGATAAAGGGAGGTGCCGAGAAG
GCAGGTCCCAGGTTTTCCATCATTGCTTGGGGGAGGAGGCGGACATTGAA
TGAACGGAATTCGACAGTGACGGCCAGGGAGACCGATAAGGGCCAGCGGC
AGGAGAAGCAAGAGGGAGGGAGGGAAGGAGGCCACCGGGGGTATGGAGGG
GGAGGGAGGCATCGGCAGCGAAAGAAGGAGGCTGGGAAGGAGGGAGGGAA
GGAGGAGGGAGACGAGGTGATGCCAATCGGCATGGACGAGGTGGCGCGAT
TGGTGGAGAAAATGGTGATGAAGGCGGACCAAAAGCAAGCACGAGAAGCC
TTGCTGTCGTCGTCTTCTCACGCTGGTGGGGGAGGAAGAGGAAAGGATGG
AGGTGGAGGAGGAAGCGGCGGGAAATCAGTTGGCGGAGAGGCAGCGGCGA
TGAAAGAAAATACGACGAGTGAGAACACAAGCGGCAGCAGCAGCAGCAGT
AATATTAGCGTCATGTCGATAGGGCGCACCCGGAGAGCGGGTCGAGTTCA
GCACTCATGGACTTCATGATGAGATACATATATCAATAGAGATACAAAGC
ACAGATGTACAAATACGAGGAAATAGAAAAGTGTAAGGACAGCAACTGCT
GCACGACAAGAGTTTGCGCTATCACATGCATACTGCATTGAAAAGAGAAA
GATAAAGCATAGGCGCTAAAGGCGGCGAAAGGGTAGAGAGGTCCCGTAAG
TACCCTTGCCCGATTTTTAAAG

Coding sequence (CDS) from alignment at chr18:504675..506996-

>NO18G01560.1 ID=NO18G01560.1|Name=NO18G01560.1|organism=Nannochloropsis oceanica|type=CDS|length=1263bp|location=Sequence derived from alignment at chr18:504675..506996- (Nannochloropsis oceanica)
ATGATCACCCCCGCTCCAGTAGCGACAAATGATGCCCAAGAGACGGAGAA
GCTCCAAGATGCCCGTGTGGCGGCTCTACGCAAGGCCGTCATGAGAACCG
CCCCTTCTCCTTCGATCACAGCCAGCAGCAGCACGAACTTAAACAACGCC
AACCCTTCCGTGGCCAAAAACCAAGCCTGGACCTTCGTCCGCGAGATGAT
GAAAGACTCGTGGATTGCACAAACCAACGCCCAACTCCTGACTGACATCA
TTCCTGCCCTGGAAGGTGGTTGTATCTATCTGCCTGGATTTCTGTGTGCA
GCCAACGACTTCAGTATCCTCAAGGGTTTGACTCGCGACCTACAGTATTG
CCCGGCCTCCAAGGAAGGAGGTGGATTCGTCACTTGGAGCCAGCATCTCA
AGTTCGAAAACCCTGGTTTTAGTCCCACCTTCCAACAGCTTCTGGCTCGA
TTAGACGCGTATTTTGACGTGGAAATTCTTGCGACGCGTTTGAATTTCTA
CAGGGATGGAAGCGACTTTAAGCCTTTCCATCACGATTCACACGCCTATG
GCACTAATGGCAAGAAGGAGGATTTTACGATGGGTGCCTCCTTTGGGAGC
ACGCGTAAACTAGCCTTTAGACATGAAGTGTCGGGACAGACTTTCACGAT
CGCGCAGGCGAATGGTGATATTTTCGCTTTCGATTCGGAAGTAAATAGAG
CGTTTACTCACGGGGTGCCCAAGATAAAGGGAGGTGCCGAGAAGGCAGGT
CCCAGGTTTTCCATCATTGCTTGGGGGAGGAGGCGGACATTGAATGAACG
GAATTCGACAGTGACGGCCAGGGAGACCGATAAGGGCCAGCGGCAGGAGA
AGCAAGAGGGAGGGAGGGAAGGAGGCCACCGGGGGTATGGAGGGGGAGGG
AGGCATCGGCAGCGAAAGAAGGAGGCTGGGAAGGAGGGAGGGAAGGAGGA
GGGAGACGAGGTGATGCCAATCGGCATGGACGAGGTGGCGCGATTGGTGG
AGAAAATGGTGATGAAGGCGGACCAAAAGCAAGCACGAGAAGCCTTGCTG
TCGTCGTCTTCTCACGCTGGTGGGGGAGGAAGAGGAAAGGATGGAGGTGG
AGGAGGAAGCGGCGGGAAATCAGTTGGCGGAGAGGCAGCGGCGATGAAAG
AAAATACGACGAGTGAGAACACAAGCGGCAGCAGCAGCAGCAGTAATATT
AGCGTCATGTCGATAGGGCGCACCCGGAGAGCGGGTCGAGTTCAGCACTC
ATGGACTTCATGA

Synonyms

Publications