NO18G01380.1, NO18G01380.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G01380.1
Unique Name	NO18G01380.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2355
Alignment location	chr18:464178..467139 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:464178..467139 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO18G01380.1 vs.
Match: PNH10384.1 (hypothetical protein TSOC_002885 [Tetrabaena socialis])

HSP 1 Score: 91.7 bits (226), Expect = 1.100e-14
Identity = 76/215 (35.35%), Postives = 101/215 (46.98%), Query Frame = 0

Query:  281 LLLRTNIAP----LQPFCSSSLSTSFSQNHHQRHHLPLPDIPLSVLKSALQKNIRRSRGEATAKVGLQLLHRAPLELYRRLPIIMLEDGICHPPALVVFTWLMMA-GERYKPDAALRKVLVRMLYEIATGKYTDFSRSLYHQILDPLPDVDDA------ILAEKGGEE-ERREEDLSSRECQLLLRCMVARRHYGGMACDAHMLRNLAKLWRVRF 484
            L L TN+AP    L  + S  L ++      +    P      S LKSALQK +R  RG   A+  L L    P +L RRL II +ED I HP  L +  WLM A G+ Y   AA    L+ + Y++AT             + D LP+  D       + A  GG + +    DL + E  L +RC++ R  YGGMACD  +LR  A  W  RF
Sbjct:  286 LALATNVAPRDGGLVSWSSDGLPSNVLPPEGRWRGSP------SALKSALQKAVRLGRGGCAARAALHLAKEDPAQLLRRLSIICVEDSILHP-GLPLVVWLMAAQGKGYIMGAAHVSALLCLTYQLATVG-----------VRDGLPEPWDGGGGEAEVGASGGGPQADDPARDLPAAEAGL-IRCLLLRASYGGMACDVRLLRGFAAYWSARF 481

The following BLAST results are available for this feature:

BLAST of NO18G01380.1 vs.

BLAST of NO18G01380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
PNH10384.1	1.100e-14	35.35	hypothetical protein TSOC_002885 [Tetrabaena socia...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G01380	NO18G01380	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G01380.1	NO18G01380.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G01380.1.cds1	NO18G01380.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G01380.1.cds2	NO18G01380.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G01380.1.cds3	NO18G01380.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:464178..467139-
coding sequence from alignment at chr18:464178..467139-

mRNA sequence

>NO18G01380.1 ID=NO18G01380.1|Name=NO18G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2355bp
ATGAGCAAGACCAGCAGGGGGAGACGGGGAAGGGGGGTGCAAGTAGCTCT
CCTTGCGTGGCGTACCCTGGCTGGTACCAGGCCACACTCGCCGATAACGC
CTATATCGCTCGAGCACAGAAAAATAAGAGCAACCGAGACCATGTCATCT
TCCAGGAAACGCTCGGTGAGCAGCGGCTCCCAGGCCGGAGGAGGTCCGCC
ACTGCCGTCTCAGAAAACCACGCTCTTCGCTTGGGCGACGACGCGCCGTA
CACTGACGAGCTCCACCACCAAGACCAAGGCAAATGCTGTGGCGGCCTTG
CGAGCTGCAGACGGGTCTGCATTTTACACTTGTCCCCTGTGCGGGCAGGG
CTTCCCCTTGACGGTGCAATCCCATGTCGATGCATGCCAAGGAGATAGAG
AGCCGAGGCAAAAAATCAGGCCGGCAGTCGACAAGGCTTGTGGAGCTACG
CAAATGCACTTACCGCAACGATTCCCTGGAGCAGCAGTAGCAGGTGTGTC
TGCCTCTTCAATAGTGTCGCAGCCTTGTCCTCTTCTGTCCTCTCATCCTT
CCTTCCAAGCGGCTGCAGCACCACCATCCCCACCACGTCCAATTGGAGTG
AAGAGGAAAAACGCCTTTGACATTCTCAAGCGGGCGGTGACAGTGCAATA
TAGAAAGGAGATATTTACCCTCACACGCAATGCAGAGGACAGTACACTCG
ATTGGACATGGGACGCGCATACAAGCGCTCACTCGCAGCCATCTACGAAA
ACCATGCCCCCTGTCGATTTGCGGGACAAACAGCAACAAGAATACTGGTG
GGAAAAAGAAATCGTTCTCCCAGGCTCCAAAACTGCACGGCTCCTTCTCC
GCACTAATATTGCGCCCCTTCAACCCTTTTGCTCCTCTTCCCTCTCTACC
TCGTTTTCCCAAAACCACCACCAACGCCACCACCTCCCACTCCCCGATAT
CCCCCTTTCAGTCCTCAAATCCGCGCTGCAAAAGAATATACGCCGCTCGC
GAGGGGAAGCCACAGCCAAAGTCGGTCTTCAGCTATTGCATCGGGCCCCT
CTCGAGCTCTATCGTCGTCTTCCTATCATCATGTTAGAAGATGGAATATG
CCACCCACCGGCCTTGGTCGTCTTTACGTGGTTGATGATGGCAGGAGAAA
GATATAAACCCGATGCCGCATTAAGGAAAGTGTTAGTACGCATGCTTTAC
GAAATAGCCACAGGAAAATATACGGACTTCTCTCGCTCGCTTTATCACCA
AATATTGGACCCTTTGCCTGATGTCGATGATGCTATCCTGGCAGAAAAAG
GCGGGGAGGAGGAGAGGAGAGAGGAGGATTTGTCATCGAGGGAATGCCAG
CTATTATTGCGGTGTATGGTGGCGAGGCGGCATTATGGAGGGATGGCATG
TGATGCCCACATGCTTCGAAATCTAGCCAAACTCTGGCGTGTCCGGTTTG
CGGTACAGGATAAAGACAATGAGGAGGACGAGGAGGAGGAGGAAATGGGG
AAGAGAAGTAACAAGATTATTTCTTTAGTCAACACACCCATGCTGTCTGC
CGCACCTCCACCCTTCTGGCAATGGCCGTCCTTCGGATCCGCCACGACCA
ACAACAACAAATGCAGTGACCACGGTCTTTTCAGTCTCCTTTCTCTTACT
TCACTCGACTACGTAAGCAAGAAGAAATTAAGGCAATACCTTGACTCTCC
CCGTCCCTGGTGTCGGTGGTTGATTTGGCAGATCCAAGCCCATGGCCGGC
CTCTACCTCAATCCTGGCTCCCCTCCTTGGTAACAATCCCTGGAGAAATG
ATGGCAGATGCTGCTGATCTTGTTCTTCCAGCAGCTGTTCCTGCTGCCTC
TTCTTCTGCAACTGCTAGCGCTGTTGCAGTAGCTCCTCCCTTGGAAAACT
GGCCAGCAGTCTGGCGGTTAAATATAGCATCGGGCGGGGAAAACGAGGAA
GACATACCTTGGTCTGCAATTGACTTCCACGTGAGTGGAGTCGTGGATGA
GATATATCAATCTCGCCTGTCGTCCGAGGAGAAACGGCGGATGGCTTGTG
TGGGAAGACTGGGTAGGAATAAAGCCGGGGAAGAGGGGCGGGAGGAATTT
GAAGACGAGGTTGTGAAGGCTTTACTTCGTTCGGCCATGTGGCGTTTTTC
TTCATCCGTGACGAACAAATTTTCAGTCCTGCTTCCTGCTCAAGAGGAGA
ACAAAAGGCTTTTGTGGACGCCCCATCAACAGGACTTTCAGGATCACAAG
GAAGAGGTCTTGCGCGAAGCCTGGGACCTAATGCGGCCTTTGGCGCATGC
GTTTGCCCAGAGCTTTATAAAGCGCCGTTATGCGAATTTGAATCGTATGC
AGTAA

protein sequence of NO18G01380.1

>NO18G01380.1-protein ID=NO18G01380.1-protein|Name=NO18G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=785bp
MSKTSRGRRGRGVQVALLAWRTLAGTRPHSPITPISLEHRKIRATETMSS
SRKRSVSSGSQAGGGPPLPSQKTTLFAWATTRRTLTSSTTKTKANAVAAL
RAADGSAFYTCPLCGQGFPLTVQSHVDACQGDREPRQKIRPAVDKACGAT
QMHLPQRFPGAAVAGVSASSIVSQPCPLLSSHPSFQAAAAPPSPPRPIGV
KRKNAFDILKRAVTVQYRKEIFTLTRNAEDSTLDWTWDAHTSAHSQPSTK
TMPPVDLRDKQQQEYWWEKEIVLPGSKTARLLLRTNIAPLQPFCSSSLST
SFSQNHHQRHHLPLPDIPLSVLKSALQKNIRRSRGEATAKVGLQLLHRAP
LELYRRLPIIMLEDGICHPPALVVFTWLMMAGERYKPDAALRKVLVRMLY
EIATGKYTDFSRSLYHQILDPLPDVDDAILAEKGGEEERREEDLSSRECQ
LLLRCMVARRHYGGMACDAHMLRNLAKLWRVRFAVQDKDNEEDEEEEEMG
KRSNKIISLVNTPMLSAAPPPFWQWPSFGSATTNNNKCSDHGLFSLLSLT
SLDYVSKKKLRQYLDSPRPWCRWLIWQIQAHGRPLPQSWLPSLVTIPGEM
MADAADLVLPAAVPAASSSATASAVAVAPPLENWPAVWRLNIASGGENEE
DIPWSAIDFHVSGVVDEIYQSRLSSEEKRRMACVGRLGRNKAGEEGREEF
EDEVVKALLRSAMWRFSSSVTNKFSVLLPAQEENKRLLWTPHQQDFQDHK
EEVLREAWDLMRPLAHAFAQSFIKRRYANLNRMQ*

mRNA from alignment at chr18:464178..467139-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G01380.1 ID=NO18G01380.1|Name=NO18G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2962bp|location=Sequence derived from alignment at chr18:464178..467139- (Nannochloropsis oceanica)
ATGAGCAAGACCAGCAGGGGGAGACGGGGAAGGGGGGTGCAAGTAGCTCT
CCTTGCGTGGCGTACCCTGGCTGGTACCAGGCCACACTCGCCGATAACGC
CTATATCGCTCGAGCACAGAAAAATAAGGTAAGTGTTCTGCTTATCTATA
TATTGAATCAATCGTATTGGAACGGCAGCAACGACTGGATGCAGGAAGCA
CATGATGATGCAGGGTGGTATAAGTCCGATCGATGGCTTCTCCTGATATT
TAATGTGCCGGGGGAGGGTGCGTGAGGGAATTGAGAAGTGGTCAGAGAGT
AGAAAAACGAGGAATAATCGGACTAAATTTATATATGATCAAGACATGAT
GCTGTAAAATGAAGCTCTGATTGCCTTGACTATAAAGTAGCCGGTTTAAG
GAAGGGGGGATGTTTCAACCCATCAAATGACCTCTGAGGCTCTGCCAGAG
CCGCTCTGCGTTCGCGGGTTGAACACTCGGCGCAGTGTGCATAGGACTAC
ATGCCTAAGCCACTTAGCCGACGGATGTTCCATGGATAAGCATACATAAT
AAGACCAAACACTCGTGACATTTCCCATCCCGCAATCACCACAGAGCAAC
CGAGACCATGTCATCTTCCAGGAAACGCTCGGTGAGCAGCGGCTCCCAGG
CCGGAGGAGGTCCGCCACTGCCGTCTCAGAAAACCACGCTCTTCGCTTGG
GCGACGACGCGCCGTACACTGACGAGCTCCACCACCAAGACCAAGGCAAA
TGCTGTGGCGGCCTTGCGAGCTGCAGACGGGTCTGCATTTTACACTTGTC
CCCTGTGCGGGCAGGGCTTCCCCTTGACGGTGCAATCCCATGTCGATGCA
TGCCAAGGAGATAGAGAGCCGAGGCAAAAAATCAGGCCGGCAGTCGACAA
GGTAATGATAATGTTGGGGGAAGAGGAGGAGCATGACGAATGGGAGTGGG
AGAGAGAAGCAAAAGAGAAGGGAAAGAGAGCACAAACAAAAAAAGCGTCT
GAAATCTCGTCAAAAACACACTCGTCGCCTCCGATCTCGCAGGCTTGTGG
AGCTACGCAAATGCACTTACCGCAACGATTCCCTGGAGCAGCAGTAGCAG
GTGTGTCTGCCTCTTCAATAGTGTCGCAGCCTTGTCCTCTTCTGTCCTCT
CATCCTTCCTTCCAAGCGGCTGCAGCACCACCATCCCCACCACGTCCAAT
TGGAGTGAAGAGGAAAAACGCCTTTGACATTCTCAAGCGGGCGGTGACAG
TGCAATATAGAAAGGAGATATTTACCCTCACACGCAATGCAGAGGACAGT
ACACTCGATTGGACATGGGACGCGCATACAAGCGCTCACTCGCAGCCATC
TACGAAAACCATGCCCCCTGTCGATTTGCGGGACAAACAGCAACAAGAAT
ACTGGTGGGAAAAAGAAATCGTTCTCCCAGGCTCCAAAACTGCACGGCTC
CTTCTCCGCACTAATATTGCGCCCCTTCAACCCTTTTGCTCCTCTTCCCT
CTCTACCTCGTTTTCCCAAAACCACCACCAACGCCACCACCTCCCACTCC
CCGATATCCCCCTTTCAGTCCTCAAATCCGCGCTGCAAAAGAATATACGC
CGCTCGCGAGGGGAAGCCACAGCCAAAGTCGGTCTTCAGCTATTGCATCG
GGCCCCTCTCGAGCTCTATCGTCGTCTTCCTATCATCATGTTAGAAGATG
GAATATGCCACCCACCGGCCTTGGTCGTCTTTACGTGGTTGATGATGGCA
GGAGAAAGATATAAACCCGATGCCGCATTAAGGAAAGTGTTAGTACGCAT
GCTTTACGAAATAGCCACAGGAAAATATACGGACTTCTCTCGCTCGCTTT
ATCACCAAATATTGGACCCTTTGCCTGATGTCGATGATGCTATCCTGGCA
GAAAAAGGCGGGGAGGAGGAGAGGAGAGAGGAGGATTTGTCATCGAGGGA
ATGCCAGCTATTATTGCGGTGTATGGTGGCGAGGCGGCATTATGGAGGGA
TGGCATGTGATGCCCACATGCTTCGAAATCTAGCCAAACTCTGGCGTGTC
CGGTTTGCGGTACAGGATAAAGACAATGAGGAGGACGAGGAGGAGGAGGA
AATGGGGAAGAGAAGTAACAAGATTATTTCTTTAGTCAACACACCCATGC
TGTCTGCCGCACCTCCACCCTTCTGGCAATGGCCGTCCTTCGGATCCGCC
ACGACCAACAACAACAAATGCAGTGACCACGGTCTTTTCAGTCTCCTTTC
TCTTACTTCACTCGACTACGTAAGCAAGAAGAAATTAAGGCAATACCTTG
ACTCTCCCCGTCCCTGGTGTCGGTGGTTGATTTGGCAGATCCAAGCCCAT
GGCCGGCCTCTACCTCAATCCTGGCTCCCCTCCTTGGTAACAATCCCTGG
AGAAATGATGGCAGATGCTGCTGATCTTGTTCTTCCAGCAGCTGTTCCTG
CTGCCTCTTCTTCTGCAACTGCTAGCGCTGTTGCAGTAGCTCCTCCCTTG
GAAAACTGGCCAGCAGTCTGGCGGTTAAATATAGCATCGGGCGGGGAAAA
CGAGGAAGACATACCTTGGTCTGCAATTGACTTCCACGTGAGTGGAGTCG
TGGATGAGATATATCAATCTCGCCTGTCGTCCGAGGAGAAACGGCGGATG
GCTTGTGTGGGAAGACTGGGTAGGAATAAAGCCGGGGAAGAGGGGCGGGA
GGAATTTGAAGACGAGGTTGTGAAGGCTTTACTTCGTTCGGCCATGTGGC
GTTTTTCTTCATCCGTGACGAACAAATTTTCAGTCCTGCTTCCTGCTCAA
GAGGAGAACAAAAGGCTTTTGTGGACGCCCCATCAACAGGACTTTCAGGA
TCACAAGGAAGAGGTCTTGCGCGAAGCCTGGGACCTAATGCGGCCTTTGG
CGCATGCGTTTGCCCAGAGCTTTATAAAGCGCCGTTATGCGAATTTGAAT
CGTATGCAGTAA

Coding sequence (CDS) from alignment at chr18:464178..467139-

>NO18G01380.1 ID=NO18G01380.1|Name=NO18G01380.1|organism=Nannochloropsis oceanica|type=CDS|length=2355bp|location=Sequence derived from alignment at chr18:464178..467139- (Nannochloropsis oceanica)
ATGAGCAAGACCAGCAGGGGGAGACGGGGAAGGGGGGTGCAAGTAGCTCT
CCTTGCGTGGCGTACCCTGGCTGGTACCAGGCCACACTCGCCGATAACGC
CTATATCGCTCGAGCACAGAAAAATAAGAGCAACCGAGACCATGTCATCT
TCCAGGAAACGCTCGGTGAGCAGCGGCTCCCAGGCCGGAGGAGGTCCGCC
ACTGCCGTCTCAGAAAACCACGCTCTTCGCTTGGGCGACGACGCGCCGTA
CACTGACGAGCTCCACCACCAAGACCAAGGCAAATGCTGTGGCGGCCTTG
CGAGCTGCAGACGGGTCTGCATTTTACACTTGTCCCCTGTGCGGGCAGGG
CTTCCCCTTGACGGTGCAATCCCATGTCGATGCATGCCAAGGAGATAGAG
AGCCGAGGCAAAAAATCAGGCCGGCAGTCGACAAGGCTTGTGGAGCTACG
CAAATGCACTTACCGCAACGATTCCCTGGAGCAGCAGTAGCAGGTGTGTC
TGCCTCTTCAATAGTGTCGCAGCCTTGTCCTCTTCTGTCCTCTCATCCTT
CCTTCCAAGCGGCTGCAGCACCACCATCCCCACCACGTCCAATTGGAGTG
AAGAGGAAAAACGCCTTTGACATTCTCAAGCGGGCGGTGACAGTGCAATA
TAGAAAGGAGATATTTACCCTCACACGCAATGCAGAGGACAGTACACTCG
ATTGGACATGGGACGCGCATACAAGCGCTCACTCGCAGCCATCTACGAAA
ACCATGCCCCCTGTCGATTTGCGGGACAAACAGCAACAAGAATACTGGTG
GGAAAAAGAAATCGTTCTCCCAGGCTCCAAAACTGCACGGCTCCTTCTCC
GCACTAATATTGCGCCCCTTCAACCCTTTTGCTCCTCTTCCCTCTCTACC
TCGTTTTCCCAAAACCACCACCAACGCCACCACCTCCCACTCCCCGATAT
CCCCCTTTCAGTCCTCAAATCCGCGCTGCAAAAGAATATACGCCGCTCGC
GAGGGGAAGCCACAGCCAAAGTCGGTCTTCAGCTATTGCATCGGGCCCCT
CTCGAGCTCTATCGTCGTCTTCCTATCATCATGTTAGAAGATGGAATATG
CCACCCACCGGCCTTGGTCGTCTTTACGTGGTTGATGATGGCAGGAGAAA
GATATAAACCCGATGCCGCATTAAGGAAAGTGTTAGTACGCATGCTTTAC
GAAATAGCCACAGGAAAATATACGGACTTCTCTCGCTCGCTTTATCACCA
AATATTGGACCCTTTGCCTGATGTCGATGATGCTATCCTGGCAGAAAAAG
GCGGGGAGGAGGAGAGGAGAGAGGAGGATTTGTCATCGAGGGAATGCCAG
CTATTATTGCGGTGTATGGTGGCGAGGCGGCATTATGGAGGGATGGCATG
TGATGCCCACATGCTTCGAAATCTAGCCAAACTCTGGCGTGTCCGGTTTG
CGGTACAGGATAAAGACAATGAGGAGGACGAGGAGGAGGAGGAAATGGGG
AAGAGAAGTAACAAGATTATTTCTTTAGTCAACACACCCATGCTGTCTGC
CGCACCTCCACCCTTCTGGCAATGGCCGTCCTTCGGATCCGCCACGACCA
ACAACAACAAATGCAGTGACCACGGTCTTTTCAGTCTCCTTTCTCTTACT
TCACTCGACTACGTAAGCAAGAAGAAATTAAGGCAATACCTTGACTCTCC
CCGTCCCTGGTGTCGGTGGTTGATTTGGCAGATCCAAGCCCATGGCCGGC
CTCTACCTCAATCCTGGCTCCCCTCCTTGGTAACAATCCCTGGAGAAATG
ATGGCAGATGCTGCTGATCTTGTTCTTCCAGCAGCTGTTCCTGCTGCCTC
TTCTTCTGCAACTGCTAGCGCTGTTGCAGTAGCTCCTCCCTTGGAAAACT
GGCCAGCAGTCTGGCGGTTAAATATAGCATCGGGCGGGGAAAACGAGGAA
GACATACCTTGGTCTGCAATTGACTTCCACGTGAGTGGAGTCGTGGATGA
GATATATCAATCTCGCCTGTCGTCCGAGGAGAAACGGCGGATGGCTTGTG
TGGGAAGACTGGGTAGGAATAAAGCCGGGGAAGAGGGGCGGGAGGAATTT
GAAGACGAGGTTGTGAAGGCTTTACTTCGTTCGGCCATGTGGCGTTTTTC
TTCATCCGTGACGAACAAATTTTCAGTCCTGCTTCCTGCTCAAGAGGAGA
ACAAAAGGCTTTTGTGGACGCCCCATCAACAGGACTTTCAGGATCACAAG
GAAGAGGTCTTGCGCGAAGCCTGGGACCTAATGCGGCCTTTGGCGCATGC
GTTTGCCCAGAGCTTTATAAAGCGCCGTTATGCGAATTTGAATCGTATGC
AGTAA

Synonyms

Publications