NO18G01230.1, NO18G01230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01230.1
Unique NameNO18G01230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length246
Alignment locationchr18:426809..427631 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:426809..427631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01230.1 vs.
Match: PSC73923.1 (NADH dehydrogenase [ubiquinone] iron-sulfur 5-B [Micractinium conductrix])

HSP 1 Score: 94.7 bits (234), Expect = 1.400e-16
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 0 
Query:    1 MSSGFGVKGSVGRCYPIWSAFEKCLATAPHFKECMDFRDDYVECLHHRKEYARVQAIEKQRVLMESGQGEEAGGHGGGG 80
            M+SGFG+KG  GRCYPIW  F +C++ A   K C DFRDDY+ECLHHRKE+ ++  + ++      G    A GHGGGG
Sbjct:    1 MASGFGIKGGPGRCYPIWMDFSECMSQAEDPKSCKDFRDDYLECLHHRKEFTKLNRLFREEKRQRDGGDSAATGHGGGG 79
The following BLAST results are available for this feature:
BLAST of NO18G01230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
PSC73923.11.400e-1651.90NADH dehydrogenase [ubiquinone] iron-sulfur 5-B [M... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01230NO18G01230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01230.1NO18G01230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01230.1.cds1NO18G01230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01230.1.cds2NO18G01230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01230.1.cds3NO18G01230.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01230.1.cds4NO18G01230.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01230.1 ID=NO18G01230.1|Name=NO18G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=246bp
ATGTCTTCAGGTTTCGGTGTCAAGGGCTCTGTGGGTCGATGTTATCCCAT
TTGGTCCGCATTTGAGAAGTGCTTGGCGACTGCTCCTCATTTCAAGGAGT
GCATGGATTTTCGTGACGACTATGTGGAGTGCCTCCATCATCGCAAAGAG
TATGCACGCGTGCAGGCTATTGAAAAGCAACGCGTGCTGATGGAGAGCGG
ACAAGGAGAGGAGGCGGGGGGACATGGCGGTGGGGGTGGGCATTAA
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protein sequence of NO18G01230.1

>NO18G01230.1-protein ID=NO18G01230.1-protein|Name=NO18G01230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=82bp
MSSGFGVKGSVGRCYPIWSAFEKCLATAPHFKECMDFRDDYVECLHHRKE
YARVQAIEKQRVLMESGQGEEAGGHGGGGGH*
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mRNA from alignment at chr18:426809..427631-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01230.1 ID=NO18G01230.1|Name=NO18G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=823bp|location=Sequence derived from alignment at chr18:426809..427631- (Nannochloropsis oceanica)
ATGGTACGTACACTCGTATAAGGAGAGGGCGACGCCGTTCTAAGCTACTT
GCTGCCGGTTGCTTTGCATATTCTTGACGAATTACCGCAGAGATGCAGGC
GTAAGAAAGCACAGGTCATTCCCGACTGCCTGCTGGTGAGCCTTCCACCC
TCTGGGCATTTTCCAATCTAATTATATCTTCCTACCCCGTAACAAAACAC
TACAGTCTTCAGGTTTCGGTGTCAAGGGCTCTGTGGGTCGATGTTATCCC
ATTTGGTCCGCATTTGAGAAGTGCTTGGTACGTGAGTGCAGGCCTGGGTC
TCGTGTTCATTGGGGAGTGCCTCCCAAAGAGAGTGCATCCCCACTAATGT
ATCTCACTTTCTTTCCCCATTATCACTCCCATGTCTATTAGGCGACTGCT
CCTCATTTCAAGGAGTGCATGGATTTTCGTGACGACTATGTGGAGTGCCT
CCATCATCGCAAAGAGGTGGGTGCTGTCGCTTTCCTCTGCCCTCTGCCCC
TGAAGAGACTCCTTCGTCTCTTTTCTGCCACGCCCGCCAGATAGGAATGT
CGAGGACAAAGTCTTCATACGTTTTGTGGGGAAAGGACATTTAAGCAATC
TTTCCTTCCTTATCTTCATCTATGTGTTGCCTTGCAAGGGTCATCACTCG
TCCACATAATCTCTAATACCCCCCCCCTTCATCCCTCCCTCCCTTTTCTA
TCTTCTTCCTTCTAAATCAAAAAACAGTATGCACGCGTGCAGGCTATTGA
AAAGCAACGCGTGCTGATGGAGAGCGGACAAGGAGAGGAGGCGGGGGGAC
ATGGCGGTGGGGGTGGGCATTAA
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Coding sequence (CDS) from alignment at chr18:426809..427631-

>NO18G01230.1 ID=NO18G01230.1|Name=NO18G01230.1|organism=Nannochloropsis oceanica|type=CDS|length=246bp|location=Sequence derived from alignment at chr18:426809..427631- (Nannochloropsis oceanica)
ATGTCTTCAGGTTTCGGTGTCAAGGGCTCTGTGGGTCGATGTTATCCCAT
TTGGTCCGCATTTGAGAAGTGCTTGGCGACTGCTCCTCATTTCAAGGAGT
GCATGGATTTTCGTGACGACTATGTGGAGTGCCTCCATCATCGCAAAGAG
TATGCACGCGTGCAGGCTATTGAAAAGCAACGCGTGCTGATGGAGAGCGG
ACAAGGAGAGGAGGCGGGGGGACATGGCGGTGGGGGTGGGCATTAA
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Synonyms
Publications