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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr18 | genome | chr18:404157..407006 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G01160.1 vs.
Match: XP_005855967.1 (calcium-dependent protein kinase [Nannochloropsis gaditana CCMP526]; EKU20376.1 calcium-dependent protein kinase [Nannochloropsis gaditana CCMP526]; EWM23335.1 calcium-dependent protein [Nannochloropsis gaditana]) HSP 1 Score: 860.9 bits (2223), Expect = 2.200e-246 Identity = 447/566 (78.98%), Postives = 498/566 (87.99%), Query Frame = 0
Query: 1 MGNTPGSIKSTKNHQQQQRKHQASPP--RKSVNTDGKVVQIAAAAAVIGGDHYNQQHQEQQQQQRSPAVKVTA-----AAKAGAGEHSPGAAAKATVAASAGASGYVTAGNKDVKTKYDIDPREIGHGHYGVVRKAKNRETGEAFAIKTIRKAKVSRLDSLRREIDILTTVDHPHIIKLVDVYEDDKYLHLVTELCTGGEMFDRIIAKTKSAEGHYSEKDAAGIMRKILDAIDYCHTVHNICHRDLKPENFLFKTTEETAELKIIDFGLSRFEDDQKYMTTRVGTPYYIAPEVLNRMYDKSCDLWSIGVIMYILLCGYPPFYGDTDADIFASVRRAQFSFPSPEWDEISPGAKDLIRKLLSKDPRKRPTAAAALNHEWFLVLEEGGKNGEKKARALTEHVRNSLRRFIGMNKLKRVALTIIAEQLAESDVSHLQEAFKLLDKDKNGVITVAELQQAAEQEGMANVQELVERLMLGVDVDESASIDYHEFLAATMERSVYVKEEHIKRAFMHFDLNGDGKITVQDLVEALGSEENASEVLGDVDRNGDGVITLDEFQVMMEAAGGSS 560
MGN G +KS+ Q ++ + P RK+VNTDGKVVQIAAAAAVI DH NQ QQQ+ A+KVT+ AAK GAG SPG K TVA+++G+SGYVTAG +D+K+KYDIDPREIGHGHYGVVRKAKNRETGEAFAIK+IRKAKVSRLDSLRREIDIL VDHP IIKLVDVYEDDK+LHLVTELCTGGEMFDRIIAKTKSAEGHYSEKDAA IMRKILDAIDYCHTVHNICHRDLKPENFLFKT + +AELKIIDFGLSRFEDDQKYMTTRVGTPYYIAPEVLNRMYDKSCDLWSIGVIMYILLCGYPPFYGDTDADIFASVRRA+F+FPSPEWD+ISP AKDLIRKLLSKDPRKRP+AAAALNHEWF VL++ G + +ALTEH+RNSLRRFIGMNKLKRVALTIIAEQ+AE+DV+H+Q+AF+ LD +K+GVITVAELQQAAEQEG+ NV+E V RLM GVDV+E+ +IDY+EFLAATMERSVYV++EHI+RAF HFD + DG ITVQDLVEALG+EENA EVLGD+DRNGDGVI+LDEF+ MMEAAG SS
Sbjct: 1 MGNAQGMVKSSATRQIADKQQERKPTVGRKAVNTDGKVVQIAAAAAVIDSDHCNQPRSHQQQR---TAIKVTSEASKPAAKGGAGGTSPG--HKVTVASTSGSSGYVTAGIRDIKSKYDIDPREIGHGHYGVVRKAKNRETGEAFAIKSIRKAKVSRLDSLRREIDILQAVDHPQIIKLVDVYEDDKFLHLVTELCTGGEMFDRIIAKTKSAEGHYSEKDAAVIMRKILDAIDYCHTVHNICHRDLKPENFLFKTEDPSAELKIIDFGLSRFEDDQKYMTTRVGTPYYIAPEVLNRMYDKSCDLWSIGVIMYILLCGYPPFYGDTDADIFASVRRAEFTFPSPEWDDISPSAKDLIRKLLSKDPRKRPSAAAALNHEWFQVLKKDG----EITQALTEHLRNSLRRFIGMNKLKRVALTIIAEQVAEADVAHVQKAFEALDTNKDGVITVAELQQAAEQEGLTNVKEQVARLMHGVDVNENTAIDYNEFLAATMERSVYVRDEHIRRAFQHFDQDMDGHITVQDLVEALGTEENAREVLGDIDRNGDGVISLDEFKNMMEAAGSSS 557
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G01160.1 ID=NO18G01160.1|Name=NO18G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2488bp
AGACAGGTGGGGGAAGGAGCCACGCACGGACGCGCAGCTGCAACCATGGG
GAACACACCTGGGTCCATCAAGTCCACCAAAAACCACCAGCAACAACAGC
GAAAACATCAAGCTTCCCCCCCTCGCAAGAGCGTCAATACGGATGGCAAG
GTCGTACAAATCGCGGCGGCTGCCGCTGTTATTGGAGGGGACCACTATAA
CCAGCAGCACCAGGAACAGCAACAGCAACAGCGATCTCCGGCAGTCAAAG
TCACGGCGGCGGCAAAAGCAGGGGCTGGCGAGCACAGCCCCGGAGCAGCG
GCCAAAGCGACGGTTGCTGCTAGTGCGGGTGCATCGGGCTACGTGACAGC
GGGGAATAAGGACGTCAAAACGAAGTATGACATTGACCCCAGGGAGATTG
GCCATGGTCATTATGGGGTGGTGAGGAAGGCCAAGAATAGGGAGACGGGG
GAAGCGTTTGCGATCAAGACGATCCGGAAGGCGAAGGTCTCGCGGTTGGA
TTCGTTGAGGCGGGAGATTGATATTTTGACGACCGTGGACCACCCCCACA
TTATAAAGTTAGTAGATGTGTATGAGGATGACAAGTATTTGCATTTGGTC
ACGGAATTGTGCACGGGAGGAGAGATGTTCGACCGGATTATTGCCAAGAC
AAAGAGCGCGGAAGGGCATTACTCGGAGAAGGACGCTGCAGGGATTATGA
GAAAGATTTTGGATGCGATTGATTATTGTCACACGGTCCACAACATCTGC
CACCGGGACCTGAAGCCGGAGAACTTTCTGTTTAAAACAACGGAGGAGAC
TGCTGAATTGAAGATTATTGATTTTGGGTTGTCGCGCTTTGAGGATGATC
AGAAGTACATGACGACGCGAGTCGGGACGCCTTATTATATCGCCCCCGAG
GTTTTGAATCGCATGTACGACAAATCATGCGACCTCTGGTCCATCGGCGT
CATCATGTACATCCTTCTTTGCGGTTACCCGCCCTTCTATGGCGATACCG
ACGCAGACATCTTCGCCTCAGTCCGCCGGGCTCAATTTTCTTTCCCTTCC
CCGGAGTGGGACGAGATCTCCCCGGGGGCCAAGGACTTGATTCGGAAGTT
GTTGAGCAAGGATCCTAGGAAGAGGCCGACGGCGGCAGCGGCATTGAATC
ATGAGTGGTTTTTGGTGCTGGAGGAGGGAGGGAAGAACGGTGAAAAAAAG
GCGAGGGCCCTGACGGAACATGTGAGGAATAGTTTGCGGAGGTTTATCGG
GATGAATAAGTTGAAGCGGGTGGCACTTACGATCATTGCCGAGCAGCTGG
CGGAGTCGGACGTAAGCCATTTGCAGGAGGCCTTCAAATTGTTAGATAAA
GATAAGAACGGGGTTATAACTGTGGCAGAATTGCAGCAGGCGGCGGAGCA
GGAGGGGATGGCAAATGTCCAGGAGCTGGTGGAGCGGTTGATGTTGGGGG
TGGATGTTGACGAGAGTGCAAGCATTGATTATCATGAGTTTTTGGCGGCT
ACGATGGAGAGGAGTGTATATGTGAAAGAAGAGCATATAAAGAGGGCATT
TATGCATTTTGATTTGAACGGGGATGGGAAAATCACAGTGCAGGACTTGG
TGGAGGCGCTGGGGTCGGAGGAAAACGCGAGTGAAGTGTTGGGCGATGTT
GACAGGAATGGCGATGGCGTGATTACGTTGGACGAGTTCCAGGTAATGAT
GGAGGCGGCAGGGGGGTCAAGCTCTCGTAATTTCCATTAGATAGAAGAAG
CAAGAAGGAGGGAAAGGGGAAACCCCGGGTGTTTTAGTTTTCTCCCGTAT
TGTAGTACTTCGGATAAAAGGAAAAGGAGGGAGAGTTTTGACGAGAAAAT
TTCAAAGACCAATCTTTTTATTTGATTCCCATGAATGGGTAGAGAAGTTG
GGACAGCAAACTCAAGAAGTGTGTTTCAAAGGAGGTGAAGTCTGAGCAGT
AAAGGAAAGGAAGTTCAAGTACCCCACAACCGAGAAAGGAGGGAGAGGGA
GGCAAGAAAGGTGGACAGTGAGAGGTAGAGGGGAAGGGGCCCTGCAAACG
CCGAAGGCTACGAATAAGATTGAAGACAAGAGATTAGAAAAAGAAGACAA
GGAAGAAAGTGCATGAAATGGGAAGAAGGAAAGAGTGTGTAATAGTATCA
GAATGTGGAAAAGAAAGTAATCGTCACAAGTGAGAGGAGTCGAGACATTG
CGGAGACTTGCCTTCCATTTCTTCTTTCAGCAATGCATTTGAGTAGTGTA
GGGCGTATTCAAAAGGACGAACCCGTGCGCAGCTGCAGTGTTTGGTGGCA
GTACAAGCAGCAATAATAGCTGCAACAAAGAAGGGAGACGTGTACATGTC
GATATAAAATAAGAAAGAGAAAAGGATATAGCGAAGAGCAAAGAGTCCAA
GCGCGAATGCCATTTGATTGAAGACAGAAGACTCATTTTGTTTCTGTAAG
TTAGATCGACTGTGAAAAGGGGGGAAATCAAAATTCGA back to topprotein sequence of NO18G01160.1 >NO18G01160.1-protein ID=NO18G01160.1-protein|Name=NO18G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=565bp
MGNTPGSIKSTKNHQQQQRKHQASPPRKSVNTDGKVVQIAAAAAVIGGDH
YNQQHQEQQQQQRSPAVKVTAAAKAGAGEHSPGAAAKATVAASAGASGYV
TAGNKDVKTKYDIDPREIGHGHYGVVRKAKNRETGEAFAIKTIRKAKVSR
LDSLRREIDILTTVDHPHIIKLVDVYEDDKYLHLVTELCTGGEMFDRIIA
KTKSAEGHYSEKDAAGIMRKILDAIDYCHTVHNICHRDLKPENFLFKTTE
ETAELKIIDFGLSRFEDDQKYMTTRVGTPYYIAPEVLNRMYDKSCDLWSI
GVIMYILLCGYPPFYGDTDADIFASVRRAQFSFPSPEWDEISPGAKDLIR
KLLSKDPRKRPTAAAALNHEWFLVLEEGGKNGEKKARALTEHVRNSLRRF
IGMNKLKRVALTIIAEQLAESDVSHLQEAFKLLDKDKNGVITVAELQQAA
EQEGMANVQELVERLMLGVDVDESASIDYHEFLAATMERSVYVKEEHIKR
AFMHFDLNGDGKITVQDLVEALGSEENASEVLGDVDRNGDGVITLDEFQV
MMEAAGGSSSRNFH* back to topmRNA from alignment at chr18:404157..407006+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G01160.1 ID=NO18G01160.1|Name=NO18G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2850bp|location=Sequence derived from alignment at chr18:404157..407006+ (Nannochloropsis oceanica)
AGACAGGTGGGGGAAGGAGCCACGCACGGACGCGCAGCTGCAACCATGGG
GAACACACCTGGGTCCATCAAGTCCACGTAAGAAGTCACAATGAAAATTG
AATGGATATGAAATTCGTGTCAGGGATGGAGCAAAGGGGAACAGGGAGGA
AATTAAAAGGCTTGTGAGGGCTCATCAGTGTGTATGTCTGTCTGAGTTCA
TGTCTCGAGTGCTTATTAAAGCGGACTTAGGTCATGCTCATTCTAATACG
AATAAATGACACGGCAGCTCAAATATTCGCCTTGATTTCTCGTTCATCCA
TACGCCAGCAAAAACCACCAGCAACAACAGCGAAAACATCAAGCTTCCCC
CCCTCGCAAGAGCGTCAATACGGATGGCAAGGTCGTACAAATCGCGGCGG
CTGCCGCTGTTATTGGAGGGGACCACTATAACCAGCAGCACCAGGAACAG
CAACAGCAACAGCGATCTCCGGCAGTCAAAGTCACGGCGGCGGCAAAAGC
AGGGGCTGGCGAGCACAGCCCCGGAGCAGCGGCCAAAGCGACGGTTGCTG
CTAGTGCGGGTGCATCGGGCTACGTGACAGCGGGGAATAAGGACGTCAAA
ACGAAGTATGACATTGACCCCAGGGAGATTGGCCATGGTCATTATGGGGT
GGTGAGGAAGGCCAAGAATAGGGAGACGGGGGAAGCGTTTGCGATCAAGA
CGATCCGGAAGGCGAAGGTCTCGCGGTTGGATTCGTTGAGGCGGGAGATT
GATATTTTGACGACCGTGGACCACCCCCACATTATAAAGTTAGTAGATGT
GTATGAGGATGACAAGTATTTGCATTTGGTCACGGAATTGTGCACGGGAG
GAGAGATGTTCGACCGGATTATTGCCAAGACAAAGAGCGCGGAAGGGCAT
TACTCGGAGAAGGACGCTGCAGGGATTATGAGAAAGATTTTGGATGCGAT
TGATTATTGTCACACGGTCCACAACATCTGCCACCGGGACCTGAAGCCGG
AGAACTTTCTGTTTAAAACAACGGAGGAGACTGCTGAATTGAAGATTATT
GATTTTGGGTTGTCGCGCTTTGAGGATGATCAGAAGTACATGACGACGCG
AGTCGGGACGCCTTATTGTAAGTAGCCTTGGTAAACCTATTCATCCATCC
ATTAAGTTATTAACCTTTTTAAAATCGCATTAAAGAAGTTTGAGATAATG
CATCCTGGGACACGTCTCACATTCCCGCCCTCCACCATTTCCACCCAGAT
ATCGCCCCCGAGGTTTTGAATCGCATGTACGACAAATCATGCGACCTCTG
GTCCATCGGCGTCATCATGTACATCCTTCTTTGCGGTTACCCGCCCTTCT
ATGGCGATACCGACGCAGACATCTTCGCCTCAGTCCGCCGGGCTCAATTT
TCTTTCCCTTCCCCGGAGTGGGACGAGATCTCCCCGGGGGCCAAGGACTT
GATTCGGAAGTTGTTGAGCAAGGATCCTAGGAAGAGGCCGACGGCGGCAG
CGGCATTGAATCATGAGTGGTTTTTGGTGCTGGAGGAGGGAGGGAAGAAC
GGTGAAAAAAAGGCGAGGGCCCTGACGGAACATGTGAGGAATAGTTTGCG
GAGGTTTATCGGGATGAATAAGTTGAAGCGGGTGGCACTTACGATCATTG
CCGAGCAGCTGGCGGAGTCGGACGTAAGCCATTTGCAGGAGGCCTTCAAA
TTGTTAGATAAAGATAAGAACGGGGTTATAACTGTGGCAGAATTGCAGCA
GGCGGCGGAGCAGGAGGGGATGGCAAATGTCCAGGAGCTGGTGGAGCGGT
TGATGTTGGGGGTGGATGTTGACGAGAGTGCAAGCATTGATTATCATGAG
TTTTTGGCGGCTACGATGGAGAGGAGTGTATATGTGAAAGAAGAGCATAT
AAAGAGGGCATTTATGCATTTTGATTTGAACGGGGATGGGAAAATCACAG
TGCAGGACTTGGTGGAGGCGCTGGGGTCGGAGGAAAACGCGAGTGAAGTG
TTGGGCGATGTTGACAGGAATGGCGATGGCGTGATTACGTTGGACGAGTT
CCAGGTAATGATGGAGGCGGCAGGGGGGTCAAGCTCTCGTAATTTCCATT
AGATAGAAGAAGCAAGAAGGAGGGAAAGGGGAAACCCCGGGTGTTTTAGT
TTTCTCCCGTATTGTAGTACTTCGGATAAAAGGAAAAGGAGGGAGAGTTT
TGACGAGAAAATTTCAAAGACCAATCTTTTTATTTGATTCCCATGAATGG
GTAGAGAAGTTGGGACAGCAAACTCAAGAAGTGTGTTTCAAAGGAGGTGA
AGTCTGAGCAGTAAAGGAAAGGAAGTTCAAGTACCCCACAACCGAGAAAG
GAGGGAGAGGGAGGCAAGAAAGGTGGACAGTGAGAGGTAGAGGGGAAGGG
GCCCTGCAAACGCCGAAGGCTACGAATAAGATTGAAGACAAGAGATTAGA
AAAAGAAGACAAGGAAGAAAGTGCATGAAATGGGAAGAAGGAAAGAGTGT
GTAATAGTATCAGAATGTGGAAAAGAAAGTAATCGTCACAAGTGAGAGGA
GTCGAGACATTGCGGAGACTTGCCTTCCATTTCTTCTTTCAGCAATGCAT
TTGAGTAGTGTAGGGCGTATTCAAAAGGACGAACCCGTGCGCAGCTGCAG
TGTTTGGTGGCAGTACAAGCAGCAATAATAGCTGCAACAAAGAAGGGAGA
CGTGTACATGTCGATATAAAATAAGAAAGAGAAAAGGATATAGCGAAGAG
CAAAGAGTCCAAGCGCGAATGCCATTTGATTGAAGACAGAAGACTCATTT
TGTTTCTGTAAGTTAGATCGACTGTGAAAAGGGGGGAAATCAAAATTCGA
back to topCoding sequence (CDS) from alignment at chr18:404157..407006+ >NO18G01160.1 ID=NO18G01160.1|Name=NO18G01160.1|organism=Nannochloropsis oceanica|type=CDS|length=1695bp|location=Sequence derived from alignment at chr18:404157..407006+ (Nannochloropsis oceanica)
ATGGGGAACACACCTGGGTCCATCAAGTCCACCAAAAACCACCAGCAACA
ACAGCGAAAACATCAAGCTTCCCCCCCTCGCAAGAGCGTCAATACGGATG
GCAAGGTCGTACAAATCGCGGCGGCTGCCGCTGTTATTGGAGGGGACCAC
TATAACCAGCAGCACCAGGAACAGCAACAGCAACAGCGATCTCCGGCAGT
CAAAGTCACGGCGGCGGCAAAAGCAGGGGCTGGCGAGCACAGCCCCGGAG
CAGCGGCCAAAGCGACGGTTGCTGCTAGTGCGGGTGCATCGGGCTACGTG
ACAGCGGGGAATAAGGACGTCAAAACGAAGTATGACATTGACCCCAGGGA
GATTGGCCATGGTCATTATGGGGTGGTGAGGAAGGCCAAGAATAGGGAGA
CGGGGGAAGCGTTTGCGATCAAGACGATCCGGAAGGCGAAGGTCTCGCGG
TTGGATTCGTTGAGGCGGGAGATTGATATTTTGACGACCGTGGACCACCC
CCACATTATAAAGTTAGTAGATGTGTATGAGGATGACAAGTATTTGCATT
TGGTCACGGAATTGTGCACGGGAGGAGAGATGTTCGACCGGATTATTGCC
AAGACAAAGAGCGCGGAAGGGCATTACTCGGAGAAGGACGCTGCAGGGAT
TATGAGAAAGATTTTGGATGCGATTGATTATTGTCACACGGTCCACAACA
TCTGCCACCGGGACCTGAAGCCGGAGAACTTTCTGTTTAAAACAACGGAG
GAGACTGCTGAATTGAAGATTATTGATTTTGGGTTGTCGCGCTTTGAGGA
TGATCAGAAGTACATGACGACGCGAGTCGGGACGCCTTATTATATCGCCC
CCGAGGTTTTGAATCGCATGTACGACAAATCATGCGACCTCTGGTCCATC
GGCGTCATCATGTACATCCTTCTTTGCGGTTACCCGCCCTTCTATGGCGA
TACCGACGCAGACATCTTCGCCTCAGTCCGCCGGGCTCAATTTTCTTTCC
CTTCCCCGGAGTGGGACGAGATCTCCCCGGGGGCCAAGGACTTGATTCGG
AAGTTGTTGAGCAAGGATCCTAGGAAGAGGCCGACGGCGGCAGCGGCATT
GAATCATGAGTGGTTTTTGGTGCTGGAGGAGGGAGGGAAGAACGGTGAAA
AAAAGGCGAGGGCCCTGACGGAACATGTGAGGAATAGTTTGCGGAGGTTT
ATCGGGATGAATAAGTTGAAGCGGGTGGCACTTACGATCATTGCCGAGCA
GCTGGCGGAGTCGGACGTAAGCCATTTGCAGGAGGCCTTCAAATTGTTAG
ATAAAGATAAGAACGGGGTTATAACTGTGGCAGAATTGCAGCAGGCGGCG
GAGCAGGAGGGGATGGCAAATGTCCAGGAGCTGGTGGAGCGGTTGATGTT
GGGGGTGGATGTTGACGAGAGTGCAAGCATTGATTATCATGAGTTTTTGG
CGGCTACGATGGAGAGGAGTGTATATGTGAAAGAAGAGCATATAAAGAGG
GCATTTATGCATTTTGATTTGAACGGGGATGGGAAAATCACAGTGCAGGA
CTTGGTGGAGGCGCTGGGGTCGGAGGAAAACGCGAGTGAAGTGTTGGGCG
ATGTTGACAGGAATGGCGATGGCGTGATTACGTTGGACGAGTTCCAGGTA
ATGATGGAGGCGGCAGGGGGGTCAAGCTCTCGTAATTTCCATTAG back to top
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