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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr18 | genome | chr18:399692..402142 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G01150.1 vs.
Match: EWM23326.1 (lipid transfer protein 5 [Nannochloropsis gaditana]) HSP 1 Score: 768.1 bits (1982), Expect = 2.500e-218 Identity = 393/540 (72.78%), Postives = 444/540 (82.22%), Query Frame = 0
Query: 187 GWSPSWSWVGQLMDEWQYRVRSLDSYRKVVRGRMDATLEGFQARYEAASRDLRKDVNKQLAKASALHEDYMDKINQQQQRLAELTRSELRIRQQGFNTSLETFKRQYDDTWGRFSGTVRKLGPFTKTEVAEQQRRLDEAFQQFMAQYSNSSAEVRNYIDRMMKLSGDVFPRLSLEDEHVLGRIRRLREEEMAELTRLGKKQLRSEKDRLEGVVERLREQQERMTRQWTAQKGDLDLSFKRLLEQLLRFNRLYDDLIARKESNLYADSLNDKVLRRALDCLDQGEADGWEFVTDTNGVRVHRKSLPSMDGKLSKYCCVKATGILAASPADILTLFEDNTRVSEYNKFYAEGRDLEAINDRTKVVWAASPPMFFFKPRDFCTVVHYRKLQDGTVVVVNRAVEHPDAPRTEKYVRAEILMGANIIQPVAGKPHQALFTIVTQVDPGIKFAPPAIVNKVVSWGPPTFFKEIETAAQKVYNRVPSAVVDEPGTGAVRAQTLPPPQDPATILPTPSSSSSSSAAVPVAVTSSSRPSRPPPLLPSER 727
GW+ WVG L+DEWQ+RV SLDSYR+VVR R+D +L FQ YEAASRD+R+D++KQLAKASAL EDYM++I QQQQRLAELTRSELR RQQGFN SLE FKRQYDDTWGRFSGTVRKLGPFTK EVAEQQRRLDE FQQFM QY NS+AEVR YIDRMM +S DVFPRLS+ED+ V G ++RLREEE+A+L RLGK +R E+ RLEGVVERLREQQERM R W+ Q+G+LD + KR++EQLL FNRLYDDLIARKESNLYADSLNDKVLRR L+CLDQGEADGWE V+D GV VHRK+LPSMDG++SKYCC+KA+G LAASP DIL+LF DNTRV EYNKFYAEGRDLEAIN+ TKVVWAASPPMFFFKPRDFCTVVHYRKLQDGTVVVVNR EHP+APRT+KYVRAEILMGANIIQPV GKPH A+FTIVTQVDPG FAPPAIVNKV SWGPPTFF+E+E AA+ + +P P P+P S +++S A P + +R SRPPPLLPSER
Sbjct: 157 GWTVPRRWVGLLVDEWQFRVESLDSYRRVVRSRLDDSLTRFQTHYEAASRDVRRDMDKQLAKASALQEDYMERIAQQQQRLAELTRSELRSRQQGFNQSLEQFKRQYDDTWGRFSGTVRKLGPFTKAEVAEQQRRLDETFQQFMTQYLNSTAEVRGYIDRMMHISSDVFPRLSMEDDQVRGLVQRLREEEVAKLARLGKAGVRVERARLEGVVERLREQQERMLRHWSHQRGELDATLKRVMEQLLNFNRLYDDLIARKESNLYADSLNDKVLRRVLECLDQGEADGWELVSDAKGVTVHRKNLPSMDGRVSKYCCIKASGTLAASPDDILSLFADNTRVPEYNKFYAEGRDLEAINEHTKVVWAASPPMFFFKPRDFCTVVHYRKLQDGTVVVVNRGAEHPEAPRTDKYVRAEILMGANIIQPVPGKPHNAVFTIVTQVDPG-GFAPPAIVNKVTSWGPPTFFREVEAAARTTHK-------------------IPAPMRVKDAAPSPESPATASTA-PSRTSMPNRVSRPPPLLPSER 675
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G01150.1 ID=NO18G01150.1|Name=NO18G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2451bp
TAGACACAAAGGTACCGGGAAGACGCCATTCTTGCTGGCGGGTGCACTGG
CCGCAGCCTACACCGTGCCAAACACAGACGTCAGCTGGGCCATGATCACC
AGCATGCCATCAAGGACACCTTTCACCCCTGCGGCGACTCCCTCGACTTC
AAACTTGCTGCGACGACGAAGATACCTGACCCCAAGGCGACAGCCCCTTT
TTCTGGCGGCCACTGTTCTGATGTGTACAGTGAATGCGGCCAGCGGGAAA
GTGCCACCCGTCAGCAGCGGATGGTTTGGCTTTAGCGGGAGCATCAAGGT
GGTGCATGCCCAGAAACAAAAGTTAGCGTCCAGTGCAGCCGGCACCATCT
CTACGACAAGCCCCGGTGCATTTTCCTTCTGGGGTGGAAAGAAGGACGAG
TGCGCGGACAAGAAAACAAGCAGCAACATATCTGCCAAGTCGGCCTCCCC
CTCCTCGTCCTCCTCGTCCTCCTCCTCTTCTTCCTCCTCAAGCACTGATA
GCGCGGAGAAGTGTTTACGTTTGGCGGAGCCAACCTCATTTGATTCTTTT
TCCTATTCCTCCCCCTCCCCCACGCCTACTCCGTCGCAGGGGAGCCACCG
CGGCGGCGCCGACAGCCGCAGCAGCAATGGCAATCACATCTTTGAAGTGG
GATGGAGCCCATCCTGGTCTTGGGTCGGACAACTGATGGACGAGTGGCAG
TATCGCGTCAGGAGTCTAGATAGCTACCGGAAGGTGGTGCGAGGACGAAT
GGACGCAACCCTGGAGGGGTTCCAGGCTCGCTATGAAGCCGCGTCGAGGG
ATCTAAGGAAGGACGTGAACAAGCAGCTAGCCAAGGCATCGGCCCTACAC
GAGGACTACATGGATAAAATTAATCAGCAACAGCAGCGGCTGGCAGAGTT
GACCCGCTCCGAGCTGCGCATTCGTCAGCAGGGATTTAACACTAGCTTGG
AAACGTTTAAGAGGCAGTATGACGACACCTGGGGTCGATTTTCAGGGACG
GTCCGGAAGCTAGGGCCATTCACCAAGACGGAAGTGGCAGAGCAGCAACG
ACGACTTGACGAGGCATTCCAGCAGTTTATGGCCCAGTATTCAAACAGCT
CCGCGGAGGTGCGTAATTACATCGACCGGATGATGAAGTTGTCGGGAGAC
GTCTTCCCACGCCTCTCCCTCGAAGATGAACACGTGCTCGGGCGCATTCG
GCGGTTGCGCGAAGAGGAGATGGCTGAGCTCACGCGCTTGGGCAAGAAGC
AGCTGCGGTCTGAGAAGGATAGATTGGAGGGTGTGGTTGAGAGGCTGAGG
GAGCAGCAGGAGAGGATGACGAGGCAGTGGACGGCGCAGAAGGGGGATTT
GGACTTATCGTTTAAGAGACTCCTAGAGCAACTGTTGAGATTTAATCGAC
TATATGACGACCTGATAGCGCGGAAGGAGTCGAATCTGTACGCGGACTCG
CTGAACGACAAGGTGCTACGAAGGGCGCTGGACTGCCTGGACCAGGGGGA
GGCGGATGGGTGGGAGTTCGTGACCGACACGAACGGCGTGAGAGTGCATC
GGAAGAGCCTTCCCTCCATGGATGGGAAGCTCTCAAAGTATTGCTGCGTC
AAGGCCACGGGCATTCTTGCCGCCAGCCCTGCAGACATCCTGACCCTATT
TGAAGACAACACCCGTGTGTCTGAATACAACAAGTTCTACGCCGAAGGCA
GGGATTTGGAGGCCATCAACGATCGCACCAAAGTAGTGTGGGCCGCCTCC
CCCCCCATGTTCTTCTTCAAACCCCGGGATTTTTGCACCGTCGTCCACTA
CCGCAAACTCCAAGACGGCACAGTCGTGGTGGTAAACCGGGCAGTGGAGC
ACCCCGACGCCCCCCGTACCGAAAAATACGTGCGTGCCGAAATCCTCATG
GGCGCCAACATAATCCAGCCTGTGGCGGGGAAACCTCACCAAGCCCTCTT
CACCATCGTCACGCAAGTGGACCCTGGGATCAAATTTGCTCCTCCTGCGA
TTGTTAACAAAGTCGTCTCATGGGGCCCTCCCACCTTTTTCAAAGAGATC
GAAACGGCCGCTCAAAAGGTCTACAACCGCGTCCCCTCTGCTGTCGTTGA
CGAGCCGGGGACAGGAGCAGTACGGGCACAGACGCTCCCACCACCACAAG
ACCCGGCGACAATATTACCAACACCATCATCATCTTCATCGTCATCAGCG
GCTGTGCCGGTGGCGGTCACGTCTTCTTCTCGACCGTCCCGACCGCCCCC
ACTATTGCCTTCTGAAAGGACGGGCAAACACAAGTGGAATTGAGGAAGGG
ATGAACATGTTGGTGAGATATCTGCACGTCTACGTCTACGGCAGCGAACA
ATCTAGTTAGATTTGTACAGGACATTTCAAACTTTTTTTATATAAGGGGG
CTTTACAAATGAGCCTGAAGAAGAAAAAAGCAAGGTCGAAACTGTGGCAG
C back to topprotein sequence of NO18G01150.1 >NO18G01150.1-protein ID=NO18G01150.1-protein|Name=NO18G01150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=734bp
MITSMPSRTPFTPAATPSTSNLLRRRRYLTPRRQPLFLAATVLMCTVNAA
SGKVPPVSSGWFGFSGSIKVVHAQKQKLASSAAGTISTTSPGAFSFWGGK
KDECADKKTSSNISAKSASPSSSSSSSSSSSSSSTDSAEKCLRLAEPTSF
DSFSYSSPSPTPTPSQGSHRGGADSRSSNGNHIFEVGWSPSWSWVGQLMD
EWQYRVRSLDSYRKVVRGRMDATLEGFQARYEAASRDLRKDVNKQLAKAS
ALHEDYMDKINQQQQRLAELTRSELRIRQQGFNTSLETFKRQYDDTWGRF
SGTVRKLGPFTKTEVAEQQRRLDEAFQQFMAQYSNSSAEVRNYIDRMMKL
SGDVFPRLSLEDEHVLGRIRRLREEEMAELTRLGKKQLRSEKDRLEGVVE
RLREQQERMTRQWTAQKGDLDLSFKRLLEQLLRFNRLYDDLIARKESNLY
ADSLNDKVLRRALDCLDQGEADGWEFVTDTNGVRVHRKSLPSMDGKLSKY
CCVKATGILAASPADILTLFEDNTRVSEYNKFYAEGRDLEAINDRTKVVW
AASPPMFFFKPRDFCTVVHYRKLQDGTVVVVNRAVEHPDAPRTEKYVRAE
ILMGANIIQPVAGKPHQALFTIVTQVDPGIKFAPPAIVNKVVSWGPPTFF
KEIETAAQKVYNRVPSAVVDEPGTGAVRAQTLPPPQDPATILPTPSSSSS
SSAAVPVAVTSSSRPSRPPPLLPSERTGKHKWN* back to topmRNA from alignment at chr18:399692..402142- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G01150.1 ID=NO18G01150.1|Name=NO18G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2451bp|location=Sequence derived from alignment at chr18:399692..402142- (Nannochloropsis oceanica)
TAGACACAAAGGTACCGGGAAGACGCCATTCTTGCTGGCGGGTGCACTGG
CCGCAGCCTACACCGTGCCAAACACAGACGTCAGCTGGGCCATGATCACC
AGCATGCCATCAAGGACACCTTTCACCCCTGCGGCGACTCCCTCGACTTC
AAACTTGCTGCGACGACGAAGATACCTGACCCCAAGGCGACAGCCCCTTT
TTCTGGCGGCCACTGTTCTGATGTGTACAGTGAATGCGGCCAGCGGGAAA
GTGCCACCCGTCAGCAGCGGATGGTTTGGCTTTAGCGGGAGCATCAAGGT
GGTGCATGCCCAGAAACAAAAGTTAGCGTCCAGTGCAGCCGGCACCATCT
CTACGACAAGCCCCGGTGCATTTTCCTTCTGGGGTGGAAAGAAGGACGAG
TGCGCGGACAAGAAAACAAGCAGCAACATATCTGCCAAGTCGGCCTCCCC
CTCCTCGTCCTCCTCGTCCTCCTCCTCTTCTTCCTCCTCAAGCACTGATA
GCGCGGAGAAGTGTTTACGTTTGGCGGAGCCAACCTCATTTGATTCTTTT
TCCTATTCCTCCCCCTCCCCCACGCCTACTCCGTCGCAGGGGAGCCACCG
CGGCGGCGCCGACAGCCGCAGCAGCAATGGCAATCACATCTTTGAAGTGG
GATGGAGCCCATCCTGGTCTTGGGTCGGACAACTGATGGACGAGTGGCAG
TATCGCGTCAGGAGTCTAGATAGCTACCGGAAGGTGGTGCGAGGACGAAT
GGACGCAACCCTGGAGGGGTTCCAGGCTCGCTATGAAGCCGCGTCGAGGG
ATCTAAGGAAGGACGTGAACAAGCAGCTAGCCAAGGCATCGGCCCTACAC
GAGGACTACATGGATAAAATTAATCAGCAACAGCAGCGGCTGGCAGAGTT
GACCCGCTCCGAGCTGCGCATTCGTCAGCAGGGATTTAACACTAGCTTGG
AAACGTTTAAGAGGCAGTATGACGACACCTGGGGTCGATTTTCAGGGACG
GTCCGGAAGCTAGGGCCATTCACCAAGACGGAAGTGGCAGAGCAGCAACG
ACGACTTGACGAGGCATTCCAGCAGTTTATGGCCCAGTATTCAAACAGCT
CCGCGGAGGTGCGTAATTACATCGACCGGATGATGAAGTTGTCGGGAGAC
GTCTTCCCACGCCTCTCCCTCGAAGATGAACACGTGCTCGGGCGCATTCG
GCGGTTGCGCGAAGAGGAGATGGCTGAGCTCACGCGCTTGGGCAAGAAGC
AGCTGCGGTCTGAGAAGGATAGATTGGAGGGTGTGGTTGAGAGGCTGAGG
GAGCAGCAGGAGAGGATGACGAGGCAGTGGACGGCGCAGAAGGGGGATTT
GGACTTATCGTTTAAGAGACTCCTAGAGCAACTGTTGAGATTTAATCGAC
TATATGACGACCTGATAGCGCGGAAGGAGTCGAATCTGTACGCGGACTCG
CTGAACGACAAGGTGCTACGAAGGGCGCTGGACTGCCTGGACCAGGGGGA
GGCGGATGGGTGGGAGTTCGTGACCGACACGAACGGCGTGAGAGTGCATC
GGAAGAGCCTTCCCTCCATGGATGGGAAGCTCTCAAAGTATTGCTGCGTC
AAGGCCACGGGCATTCTTGCCGCCAGCCCTGCAGACATCCTGACCCTATT
TGAAGACAACACCCGTGTGTCTGAATACAACAAGTTCTACGCCGAAGGCA
GGGATTTGGAGGCCATCAACGATCGCACCAAAGTAGTGTGGGCCGCCTCC
CCCCCCATGTTCTTCTTCAAACCCCGGGATTTTTGCACCGTCGTCCACTA
CCGCAAACTCCAAGACGGCACAGTCGTGGTGGTAAACCGGGCAGTGGAGC
ACCCCGACGCCCCCCGTACCGAAAAATACGTGCGTGCCGAAATCCTCATG
GGCGCCAACATAATCCAGCCTGTGGCGGGGAAACCTCACCAAGCCCTCTT
CACCATCGTCACGCAAGTGGACCCTGGGATCAAATTTGCTCCTCCTGCGA
TTGTTAACAAAGTCGTCTCATGGGGCCCTCCCACCTTTTTCAAAGAGATC
GAAACGGCCGCTCAAAAGGTCTACAACCGCGTCCCCTCTGCTGTCGTTGA
CGAGCCGGGGACAGGAGCAGTACGGGCACAGACGCTCCCACCACCACAAG
ACCCGGCGACAATATTACCAACACCATCATCATCTTCATCGTCATCAGCG
GCTGTGCCGGTGGCGGTCACGTCTTCTTCTCGACCGTCCCGACCGCCCCC
ACTATTGCCTTCTGAAAGGACGGGCAAACACAAGTGGAATTGAGGAAGGG
ATGAACATGTTGGTGAGATATCTGCACGTCTACGTCTACGGCAGCGAACA
ATCTAGTTAGATTTGTACAGGACATTTCAAACTTTTTTTATATAAGGGGG
CTTTACAAATGAGCCTGAAGAAGAAAAAAGCAAGGTCGAAACTGTGGCAG
C back to topCoding sequence (CDS) from alignment at chr18:399692..402142- >NO18G01150.1 ID=NO18G01150.1|Name=NO18G01150.1|organism=Nannochloropsis oceanica|type=CDS|length=2202bp|location=Sequence derived from alignment at chr18:399692..402142- (Nannochloropsis oceanica)
ATGATCACCAGCATGCCATCAAGGACACCTTTCACCCCTGCGGCGACTCC
CTCGACTTCAAACTTGCTGCGACGACGAAGATACCTGACCCCAAGGCGAC
AGCCCCTTTTTCTGGCGGCCACTGTTCTGATGTGTACAGTGAATGCGGCC
AGCGGGAAAGTGCCACCCGTCAGCAGCGGATGGTTTGGCTTTAGCGGGAG
CATCAAGGTGGTGCATGCCCAGAAACAAAAGTTAGCGTCCAGTGCAGCCG
GCACCATCTCTACGACAAGCCCCGGTGCATTTTCCTTCTGGGGTGGAAAG
AAGGACGAGTGCGCGGACAAGAAAACAAGCAGCAACATATCTGCCAAGTC
GGCCTCCCCCTCCTCGTCCTCCTCGTCCTCCTCCTCTTCTTCCTCCTCAA
GCACTGATAGCGCGGAGAAGTGTTTACGTTTGGCGGAGCCAACCTCATTT
GATTCTTTTTCCTATTCCTCCCCCTCCCCCACGCCTACTCCGTCGCAGGG
GAGCCACCGCGGCGGCGCCGACAGCCGCAGCAGCAATGGCAATCACATCT
TTGAAGTGGGATGGAGCCCATCCTGGTCTTGGGTCGGACAACTGATGGAC
GAGTGGCAGTATCGCGTCAGGAGTCTAGATAGCTACCGGAAGGTGGTGCG
AGGACGAATGGACGCAACCCTGGAGGGGTTCCAGGCTCGCTATGAAGCCG
CGTCGAGGGATCTAAGGAAGGACGTGAACAAGCAGCTAGCCAAGGCATCG
GCCCTACACGAGGACTACATGGATAAAATTAATCAGCAACAGCAGCGGCT
GGCAGAGTTGACCCGCTCCGAGCTGCGCATTCGTCAGCAGGGATTTAACA
CTAGCTTGGAAACGTTTAAGAGGCAGTATGACGACACCTGGGGTCGATTT
TCAGGGACGGTCCGGAAGCTAGGGCCATTCACCAAGACGGAAGTGGCAGA
GCAGCAACGACGACTTGACGAGGCATTCCAGCAGTTTATGGCCCAGTATT
CAAACAGCTCCGCGGAGGTGCGTAATTACATCGACCGGATGATGAAGTTG
TCGGGAGACGTCTTCCCACGCCTCTCCCTCGAAGATGAACACGTGCTCGG
GCGCATTCGGCGGTTGCGCGAAGAGGAGATGGCTGAGCTCACGCGCTTGG
GCAAGAAGCAGCTGCGGTCTGAGAAGGATAGATTGGAGGGTGTGGTTGAG
AGGCTGAGGGAGCAGCAGGAGAGGATGACGAGGCAGTGGACGGCGCAGAA
GGGGGATTTGGACTTATCGTTTAAGAGACTCCTAGAGCAACTGTTGAGAT
TTAATCGACTATATGACGACCTGATAGCGCGGAAGGAGTCGAATCTGTAC
GCGGACTCGCTGAACGACAAGGTGCTACGAAGGGCGCTGGACTGCCTGGA
CCAGGGGGAGGCGGATGGGTGGGAGTTCGTGACCGACACGAACGGCGTGA
GAGTGCATCGGAAGAGCCTTCCCTCCATGGATGGGAAGCTCTCAAAGTAT
TGCTGCGTCAAGGCCACGGGCATTCTTGCCGCCAGCCCTGCAGACATCCT
GACCCTATTTGAAGACAACACCCGTGTGTCTGAATACAACAAGTTCTACG
CCGAAGGCAGGGATTTGGAGGCCATCAACGATCGCACCAAAGTAGTGTGG
GCCGCCTCCCCCCCCATGTTCTTCTTCAAACCCCGGGATTTTTGCACCGT
CGTCCACTACCGCAAACTCCAAGACGGCACAGTCGTGGTGGTAAACCGGG
CAGTGGAGCACCCCGACGCCCCCCGTACCGAAAAATACGTGCGTGCCGAA
ATCCTCATGGGCGCCAACATAATCCAGCCTGTGGCGGGGAAACCTCACCA
AGCCCTCTTCACCATCGTCACGCAAGTGGACCCTGGGATCAAATTTGCTC
CTCCTGCGATTGTTAACAAAGTCGTCTCATGGGGCCCTCCCACCTTTTTC
AAAGAGATCGAAACGGCCGCTCAAAAGGTCTACAACCGCGTCCCCTCTGC
TGTCGTTGACGAGCCGGGGACAGGAGCAGTACGGGCACAGACGCTCCCAC
CACCACAAGACCCGGCGACAATATTACCAACACCATCATCATCTTCATCG
TCATCAGCGGCTGTGCCGGTGGCGGTCACGTCTTCTTCTCGACCGTCCCG
ACCGCCCCCACTATTGCCTTCTGAAAGGACGGGCAAACACAAGTGGAATT
GA back to top
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