NO18G01010.1, NO18G01010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01010.1
Unique NameNO18G01010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2176
Alignment locationchr18:360115..362375 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:360115..362375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01010.1 vs.
Match: EWM23307.1 (lysine-specific demethylase 8 [Nannochloropsis gaditana])

HSP 1 Score: 540.8 bits (1392), Expect = 4.600e-150
Identity = 286/497 (57.55%), Postives = 346/497 (69.62%), Query Frame = 0 
Query:   40 AWRVVIQSPPGLLKALTQEGALLCASLCAKVREAIQAKHWTEVKTLGKELQEVSWESLHSGAAWREVTVTIRRAYAHSQFVLAAAEIVQMQQDGYSDT----------AETCLKECMRRLDMALLMGPPDIQAEANGLIDWVQDEL-------LQHLPQKPLLPARKRFRPSKARINDEEDDIPRLACPSLHAFLDQHIKPQVPVILTDGLEHWPALKLWRDLNYLKRVAGQRVVPVEVGTGTYLTAETEEEGEDEEGGEWGQQLMPLTDFIERYVVDACSEVDGGEGEFGRESVKNLMVSGADAKLEYTSGGGEGEGIGRDVGKIEGKTNRALRDKRKKKGYLAQHELFEQVAALKKDIYVPDYCALEVDEEGEE--EEDGQVILHAWFGPGGTVSPTHTDPYHNLLAQVVGSKAVRLFAPSQSPYLYAHEGLLNNNSRVNVQKPDLEKFPLFAQAKSQRCVLKEGEMLYIPPLWWHHIESLETSFSVSFWWGRRR 518
            AWR+ ++ P  L + L QEG+LLC SLCA    +IQA  WT V+ LG+EL+EV+WE LHS  AWR+VTVT RR YA+SQF+LAA + V+ QQ+  +DT            T LKEC+RR+DMALLMGPP I+  ANGLI+W +  L        Q L  +P     KR RP +  + D    IPRLACPSL AFL++H+ PQVPVILT  +EHWPAL+ WRD++YLK VAG+RVVPVEVG+GTY+  E E  G +EEG  WGQ+LMPL DFI+RY+  A S  +  EG+                     S  G G     D G++E     A R +   + YLAQHELFEQ+ AL+KD++VPDYCALEV E GEE  EEDG V+ +AWFGPGGTVSPTHTDPYHNLLAQVVGSKAVRLFAPS+SP LY  +GLL NNSRV+  +PDL +FPLFA+A SQ CVL+EGEMLYIPPLWWHHI++L  SFSVSFWWGRRR
Sbjct:    9 AWRIALEEPHELCQDLRQEGSLLCGSLCAGCTNSIQAGDWTTVEALGRELEEVAWEGLHSSPAWRDVTVTTRRVYAYSQFILAAVQAVKFQQEEDTDTNTSTQKRSSVVSTRLKECIRRIDMALLMGPPSIKGVANGLIEWAEQRLRPCKPEAAQFLSSRPRELRVKRPRPVEGLVGD----IPRLACPSLDAFLEKHMVPQVPVILTQCMEHWPALRRWRDMDYLKEVAGERVVPVEVGSGTYMAGEGE--GLEEEGA-WGQELMPLGDFIDRYMTGAESGPESREGD--------------------ASSAGPGGQTWADGGEVE-----AGRRETGCRAYLAQHELFEQIPALQKDVWVPDYCALEV-EGGEEALEEDGLVVTNAWFGPGGTVSPTHTDPYHNLLAQVVGSKAVRLFAPSESPCLYPCQGLLRNNSRVDPLRPDLARFPLFARANSQTCVLEEGEMLYIPPLWWHHIQALSPSFSVSFWWGRRR 472
The following BLAST results are available for this feature:
BLAST of NO18G01010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23307.14.600e-15057.55lysine-specific demethylase 8 [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01010NO18G01010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01010.1NO18G01010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01010.1.cds1NO18G01010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01010.1.cds2NO18G01010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01010.1 ID=NO18G01010.1|Name=NO18G01010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2176bp
TGTCACTAGCCTCTTTTATTTAATCCTCATTCGTTCCTATTCGCACTCTC
CCGGCGTGTCGCCTGCATCCGTCTACCCTCATCTTAACCCTTGCTGTTCA
GGCGTGAGCCCCCCGGGATTACAGGCATCGCATGAAACATATCCGAAGCC
TTGACACCTCAAGCACTTATATCTTTCAAAGACTGCACCGTTTTTCTTAT
CGATACCCGTGCCTGCACAAGTGGGGCAATCGATCGCGCCTTTCCTATTG
CAGACCTTGCAAGAAGCGATGCGGGCCTTGACCTTTTTGGGGTCTTCCTT
GTTGCCACCGCTGGCACTGGGCTGCTTCTTATTGCCACCAAAGAGCCCCC
AAAAGACTTTTAATCTGTCCTTGCGTGCAAGAGCAGTAGAGGTCGGAAAG
GAGGGGACGGGTGTCACTAGGAAGGAGGATGGCGCTGTTGCTCCACGGGC
TGCTGCCGCGTTTGGAAAAGAAAATGGAAGGCAAATGCAAATGAACAACA
GCATGAGAGCACGCAGTTTTCTTGAGAAGCCGTACATCTTCCTGTACATA
GAGGGCGTATTTGGTGCTTAGAAGAGAGTGGGTGCATGTGCATTGTGGCC
ATGCGGGTTCCGACAGCAGATGTCTCCAGAGGGCTCCTTGCTTCCTTGTC
CACACGCCCTTACTCATGCAATCTTTTCAATCCACGACCCGTGCTACATG
AAACAGGACGACATGTCATTTGAGCTTCTACCGTCAGCCTGGAGAGTCGT
TATTCAGTCACCGCCAGGACTACTCAAAGCTCTCACACAAGAAGGGGCAT
TGCTTTGTGCATCATTGTGTGCTAAAGTTAGAGAGGCTATCCAGGCCAAA
CATTGGACGGAGGTGAAGACCTTGGGGAAAGAGCTACAAGAGGTGTCTTG
GGAGAGTCTCCACAGTGGGGCAGCCTGGAGGGAGGTCACAGTGACCATCA
GAAGGGCATATGCGCATTCCCAATTTGTCCTAGCGGCCGCCGAAATTGTG
CAAATGCAGCAAGATGGATATAGCGACACTGCAGAGACGTGCCTGAAAGA
ATGCATGCGCCGTTTGGACATGGCCCTATTAATGGGACCCCCAGACATTC
AAGCAGAAGCCAACGGTCTGATCGACTGGGTTCAAGACGAACTCCTCCAG
CACCTGCCACAGAAGCCTTTGTTACCAGCACGGAAACGATTTCGTCCTTC
CAAAGCCCGAATCAACGATGAAGAGGACGATATCCCCCGCCTGGCCTGCC
CCTCCCTTCACGCCTTCCTCGACCAGCACATAAAGCCCCAAGTTCCTGTC
ATCCTCACAGATGGCTTAGAGCATTGGCCGGCATTAAAGTTATGGCGAGA
TTTGAATTACTTGAAACGCGTGGCAGGGCAGCGGGTTGTCCCGGTGGAGG
TGGGCACAGGGACGTACCTGACGGCTGAGACCGAGGAGGAGGGGGAAGAC
GAGGAAGGAGGAGAATGGGGGCAGCAGCTTATGCCCCTGACGGATTTTAT
CGAACGGTACGTGGTGGATGCTTGTTCTGAGGTGGATGGAGGAGAAGGAG
AGTTTGGAAGGGAGTCAGTGAAAAACTTGATGGTGAGTGGTGCTGATGCG
AAGTTAGAATATACAAGTGGAGGAGGAGAAGGAGAAGGAATAGGAAGAGA
TGTCGGAAAGATAGAAGGTAAGACTAATCGGGCCCTACGTGACAAAAGGA
AGAAGAAAGGATATCTGGCCCAGCACGAATTATTCGAGCAGGTCGCAGCC
TTAAAGAAAGACATTTATGTCCCTGATTACTGCGCTCTGGAGGTGGATGA
GGAGGGCGAGGAGGAGGAGGACGGTCAGGTGATCCTCCACGCTTGGTTTG
GACCTGGAGGCACTGTCTCGCCGACGCACACTGACCCTTATCATAACCTG
CTAGCTCAAGTCGTGGGCTCCAAGGCCGTAAGACTTTTCGCGCCTTCGCA
GTCTCCTTACCTGTATGCGCATGAAGGCTTATTAAATAACAATAGCAGGG
TAAATGTTCAAAAGCCAGACCTGGAAAAATTTCCATTATTCGCCCAAGCA
AAGAGTCAGAGGTGCGTGCTGAAGGAGGGGGAGATGCTGTATATACCGCC
GTTGTGGTGGCATCACATCGAGAGCTTGGAAACGTCGTTTTCGGTGTCGT
TTTGGTGGGGGCGACGGAGGGGATGA
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protein sequence of NO18G01010.1

>NO18G01010.1-protein ID=NO18G01010.1-protein|Name=NO18G01010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp
MSPEGSLLPCPHALTHAIFSIHDPCYMKQDDMSFELLPSAWRVVIQSPPG
LLKALTQEGALLCASLCAKVREAIQAKHWTEVKTLGKELQEVSWESLHSG
AAWREVTVTIRRAYAHSQFVLAAAEIVQMQQDGYSDTAETCLKECMRRLD
MALLMGPPDIQAEANGLIDWVQDELLQHLPQKPLLPARKRFRPSKARIND
EEDDIPRLACPSLHAFLDQHIKPQVPVILTDGLEHWPALKLWRDLNYLKR
VAGQRVVPVEVGTGTYLTAETEEEGEDEEGGEWGQQLMPLTDFIERYVVD
ACSEVDGGEGEFGRESVKNLMVSGADAKLEYTSGGGEGEGIGRDVGKIEG
KTNRALRDKRKKKGYLAQHELFEQVAALKKDIYVPDYCALEVDEEGEEEE
DGQVILHAWFGPGGTVSPTHTDPYHNLLAQVVGSKAVRLFAPSQSPYLYA
HEGLLNNNSRVNVQKPDLEKFPLFAQAKSQRCVLKEGEMLYIPPLWWHHI
ESLETSFSVSFWWGRRRG*
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mRNA from alignment at chr18:360115..362375+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01010.1 ID=NO18G01010.1|Name=NO18G01010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2261bp|location=Sequence derived from alignment at chr18:360115..362375+ (Nannochloropsis oceanica)
TGTCACTAGCCTCTTTTATTTAATCCTCATTCGTTCCTATTCGCACTCTC
CCGGCGTGTCGCCTGCATCCGTCTACCCTCATCTTAACCCTTGCTGTTCA
GGCGTGAGCCCCCCGGGATTACAGGCATCGCATGAAACATATCCGAAGCC
TTGACACCTCAAGCACTTATATCTTTCAAAGACTGCACCGTTTTTCTTAT
CGATACCCGTGCCTGCACAAGTGGGGCAATCGATCGCGCCTTTCCTATTG
CAGACCTTGCAAGAAGCGATGCGGGCCTTGACCTTTTTGGGGTCTTCCTT
GTTGCCACCGCTGGCACTGGGCTGCTTCTTATTGCCACCAAAGAGCCCCC
AAAAGACTTTTAATCTGTCCTTGCGTGCAAGAGCAGTAGAGGTCGGAAAG
GAGGGGACGGGTGTCACTAGGAAGGAGGATGGCGCTGTTGCTCCACGGGC
TGCTGCCGCGTTTGGAAAAGAAAATGGAAGGCAAATGCAAATGAACAACA
GCATGAGAGCACGCAGTTTTCTTGAGAAGCCGTACATCTTCCTGTACATA
GAGGGCGTATTTGGTGCTTAGAAGAGAGTGGGTGCATGTGCATTGTGGCC
ATGCGGGTTCCGACAGCAGATGTCTCCAGAGGGCTCCTTGCTTCCTTGTC
CACACGCCCTTACTCATGCAATCTTTTCAATCCACGACCCGTGCTACATG
AAACAGGACGACATGTCATTTGAGCTTCTACCGTCAGCCTGGAGAGTCGT
TATTCAGTCACCGCCAGGACTACTCAAAGGTAAAGATGCTCTTCCCCAAA
ATCAACCTCCCCCCATTATTATTGCTTGCCTTGCCTCAACCCATTCCTTT
TCCTACAATCCAAGCTCTCACACAAGAAGGGGCATTGCTTTGTGCATCAT
TGTGTGCTAAAGTTAGAGAGGCTATCCAGGCCAAACATTGGACGGAGGTG
AAGACCTTGGGGAAAGAGCTACAAGAGGTGTCTTGGGAGAGTCTCCACAG
TGGGGCAGCCTGGAGGGAGGTCACAGTGACCATCAGAAGGGCATATGCGC
ATTCCCAATTTGTCCTAGCGGCCGCCGAAATTGTGCAAATGCAGCAAGAT
GGATATAGCGACACTGCAGAGACGTGCCTGAAAGAATGCATGCGCCGTTT
GGACATGGCCCTATTAATGGGACCCCCAGACATTCAAGCAGAAGCCAACG
GTCTGATCGACTGGGTTCAAGACGAACTCCTCCAGCACCTGCCACAGAAG
CCTTTGTTACCAGCACGGAAACGATTTCGTCCTTCCAAAGCCCGAATCAA
CGATGAAGAGGACGATATCCCCCGCCTGGCCTGCCCCTCCCTTCACGCCT
TCCTCGACCAGCACATAAAGCCCCAAGTTCCTGTCATCCTCACAGATGGC
TTAGAGCATTGGCCGGCATTAAAGTTATGGCGAGATTTGAATTACTTGAA
ACGCGTGGCAGGGCAGCGGGTTGTCCCGGTGGAGGTGGGCACAGGGACGT
ACCTGACGGCTGAGACCGAGGAGGAGGGGGAAGACGAGGAAGGAGGAGAA
TGGGGGCAGCAGCTTATGCCCCTGACGGATTTTATCGAACGGTACGTGGT
GGATGCTTGTTCTGAGGTGGATGGAGGAGAAGGAGAGTTTGGAAGGGAGT
CAGTGAAAAACTTGATGGTGAGTGGTGCTGATGCGAAGTTAGAATATACA
AGTGGAGGAGGAGAAGGAGAAGGAATAGGAAGAGATGTCGGAAAGATAGA
AGGTAAGACTAATCGGGCCCTACGTGACAAAAGGAAGAAGAAAGGATATC
TGGCCCAGCACGAATTATTCGAGCAGGTCGCAGCCTTAAAGAAAGACATT
TATGTCCCTGATTACTGCGCTCTGGAGGTGGATGAGGAGGGCGAGGAGGA
GGAGGACGGTCAGGTGATCCTCCACGCTTGGTTTGGACCTGGAGGCACTG
TCTCGCCGACGCACACTGACCCTTATCATAACCTGCTAGCTCAAGTCGTG
GGCTCCAAGGCCGTAAGACTTTTCGCGCCTTCGCAGTCTCCTTACCTGTA
TGCGCATGAAGGCTTATTAAATAACAATAGCAGGGTAAATGTTCAAAAGC
CAGACCTGGAAAAATTTCCATTATTCGCCCAAGCAAAGAGTCAGAGGTGC
GTGCTGAAGGAGGGGGAGATGCTGTATATACCGCCGTTGTGGTGGCATCA
CATCGAGAGCTTGGAAACGTCGTTTTCGGTGTCGTTTTGGTGGGGGCGAC
GGAGGGGATGA
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Coding sequence (CDS) from alignment at chr18:360115..362375+

>NO18G01010.1 ID=NO18G01010.1|Name=NO18G01010.1|organism=Nannochloropsis oceanica|type=CDS|length=1557bp|location=Sequence derived from alignment at chr18:360115..362375+ (Nannochloropsis oceanica)
ATGTCTCCAGAGGGCTCCTTGCTTCCTTGTCCACACGCCCTTACTCATGC
AATCTTTTCAATCCACGACCCGTGCTACATGAAACAGGACGACATGTCAT
TTGAGCTTCTACCGTCAGCCTGGAGAGTCGTTATTCAGTCACCGCCAGGA
CTACTCAAAGCTCTCACACAAGAAGGGGCATTGCTTTGTGCATCATTGTG
TGCTAAAGTTAGAGAGGCTATCCAGGCCAAACATTGGACGGAGGTGAAGA
CCTTGGGGAAAGAGCTACAAGAGGTGTCTTGGGAGAGTCTCCACAGTGGG
GCAGCCTGGAGGGAGGTCACAGTGACCATCAGAAGGGCATATGCGCATTC
CCAATTTGTCCTAGCGGCCGCCGAAATTGTGCAAATGCAGCAAGATGGAT
ATAGCGACACTGCAGAGACGTGCCTGAAAGAATGCATGCGCCGTTTGGAC
ATGGCCCTATTAATGGGACCCCCAGACATTCAAGCAGAAGCCAACGGTCT
GATCGACTGGGTTCAAGACGAACTCCTCCAGCACCTGCCACAGAAGCCTT
TGTTACCAGCACGGAAACGATTTCGTCCTTCCAAAGCCCGAATCAACGAT
GAAGAGGACGATATCCCCCGCCTGGCCTGCCCCTCCCTTCACGCCTTCCT
CGACCAGCACATAAAGCCCCAAGTTCCTGTCATCCTCACAGATGGCTTAG
AGCATTGGCCGGCATTAAAGTTATGGCGAGATTTGAATTACTTGAAACGC
GTGGCAGGGCAGCGGGTTGTCCCGGTGGAGGTGGGCACAGGGACGTACCT
GACGGCTGAGACCGAGGAGGAGGGGGAAGACGAGGAAGGAGGAGAATGGG
GGCAGCAGCTTATGCCCCTGACGGATTTTATCGAACGGTACGTGGTGGAT
GCTTGTTCTGAGGTGGATGGAGGAGAAGGAGAGTTTGGAAGGGAGTCAGT
GAAAAACTTGATGGTGAGTGGTGCTGATGCGAAGTTAGAATATACAAGTG
GAGGAGGAGAAGGAGAAGGAATAGGAAGAGATGTCGGAAAGATAGAAGGT
AAGACTAATCGGGCCCTACGTGACAAAAGGAAGAAGAAAGGATATCTGGC
CCAGCACGAATTATTCGAGCAGGTCGCAGCCTTAAAGAAAGACATTTATG
TCCCTGATTACTGCGCTCTGGAGGTGGATGAGGAGGGCGAGGAGGAGGAG
GACGGTCAGGTGATCCTCCACGCTTGGTTTGGACCTGGAGGCACTGTCTC
GCCGACGCACACTGACCCTTATCATAACCTGCTAGCTCAAGTCGTGGGCT
CCAAGGCCGTAAGACTTTTCGCGCCTTCGCAGTCTCCTTACCTGTATGCG
CATGAAGGCTTATTAAATAACAATAGCAGGGTAAATGTTCAAAAGCCAGA
CCTGGAAAAATTTCCATTATTCGCCCAAGCAAAGAGTCAGAGGTGCGTGC
TGAAGGAGGGGGAGATGCTGTATATACCGCCGTTGTGGTGGCATCACATC
GAGAGCTTGGAAACGTCGTTTTCGGTGTCGTTTTGGTGGGGGCGACGGAG
GGGATGA
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Synonyms
Publications