NO18G01000.1, NO18G01000.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G01000.1
Unique Name	NO18G01000.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1737
Alignment location	chr18:356738..358474 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:356738..358474 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO18G01000.1 vs.
Match: EWM23319.1 (myc-induced nuclear antigen [Nannochloropsis gaditana])

HSP 1 Score: 434.5 bits (1116), Expect = 5.200e-118
Identity = 274/519 (52.79%), Postives = 327/519 (63.01%), Query Frame = 0

Query:   43 QQQRPQLQRPVSSHARLPSTFKPAITQATTSTAADSITTSTTIAPDETLGKILAEAGAGCGKLDLKNVFQALLTAPNSPFLDKYWQREPCYTATSIPCLAQAWTMADMEDAIAREFLLAGRGFFEEEGSKMSGGWKMATVGEARGSSFEDAKLRPEDVRAALAKRSGTVVFNSVGGSVAALAGVCLDAVETFLLPVALNLYLTAPGQATSAPPHTDKQDVFVLQTQGRKRWRVYSPPAPGKKAHVDPFARGKDADNLSLSELGTPLVDMVLGPGQMLYMPAGFPHTTDTVVGMTGEKDSSVHLTLGVDTHIWGLTHATLRDYFLYRLSYNGGSSSGSDMIPPPPPSTLADASAFIQYHSQLPIGAREARAVAGGEGGAERVAPKRWSELKKVLGDAVIEEFKQVICAVDDQDVLASLKEKGGKEEEVLRQVVAKVIDHHRSLTAVFRSMYVDVKFGLTEVPRDLSCLRSQAYYQNIENTMQALVEWAAPPSLPPSPAAAAAGAAGGGGGAGGSKGGFGG 562
            + Q PQ+ R +  H   P T  PA T     TA   I+T+  +A D+ LG +L EA  GC KLDLK VF+AL TAP+SPFL KYWQR PC+T+TSIPCLAQAWTMADME+AIA+EFLLAGRGFFEE     +GGWKMA VG ARGSSFE+AKLRPEDVRAAL +RSGTVVFNSVGGSVAALAGVC                              D  + F L         +Y   APG+     P    +D   L                 ++LYMPAGFPHTTDTVVGM  E+D SVHLTLGVDTHIWGLTHA LRDYFLYRL     ++     +PPPPPST     AF+++H+QLP+G REA A   G          RWS LK+VLG  V  EF+ V+  ++D+ VL  L+E+G  E  VL +VVA+++DHHRSLT+VFR+MY DVK+GL++V RDLSCLRSQ YYQN+E TMQALV+WAA     P+PA          GG   +K   GG
Sbjct:   38 KHQDPQVPR-LPGHC--PLTTLPAAT-----TANAPISTAPVVA-DQALGTLLVEADTGCDKLDLKRVFEAL-TAPSSPFLAKYWQRAPCFTSTSIPCLAQAWTMADMEEAIAKEFLLAGRGFFEENSE--TGGWKMAAVGLARGSSFEEAKLRPEDVRAALKQRSGTVVFNSVGGSVAALAGVC-----------------------------LDAVEAFRLPVA----LNLYMT-APGQSTSAPPHTDKQDVFVLQTQGRKR---------WRVLYMPAGFPHTTDTVVGMAEERDPSVHLTLGVDTHIWGLTHAALRDYFLYRLQPGPTAT-----LPPPPPSTQTLPEAFVRFHAQLPLGLREAAAADAGT---------RWSALKQVLGAGVEAEFQAVMREIEDEHVLQRLEEEGAAE--VLGEVVARLLDHHRSLTSVFRAMYSDVKYGLSDVTRDLSCLRSQPYYQNLETTMQALVDWAA-----PAPAGGRERERKMPGGQRRAKAASGG 480

The following BLAST results are available for this feature:

BLAST of NO18G01000.1 vs.

BLAST of NO18G01000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23319.1	5.200e-118	52.79	myc-induced nuclear antigen [Nannochloropsis gadit...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G01000	NO18G01000	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G01000.1	NO18G01000.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G01000.1.cds1	NO18G01000.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:356738..358474-
coding sequence from alignment at chr18:356738..358474-

mRNA sequence

>NO18G01000.1 ID=NO18G01000.1|Name=NO18G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp
ATGAAGCCACTAGATGTCCCTGGCCACTATCAAAGGCGTTCCCTGCGCTT
GATTCCCGTACTGCTTGCTGTCTTCCTCCTGCTTGATGCACCCGCCAGCA
TAAATGCATTTGTTGTACGCGGTCTCCAGCAACAACGACCTCAACTCCAG
AGGCCTGTCTCCTCCCATGCACGTCTCCCTTCCACTTTCAAACCCGCCAT
CACCCAAGCCACCACTTCGACGGCAGCTGACTCCATTACCACTTCCACAA
CCATTGCGCCTGATGAGACCCTGGGCAAAATCTTGGCCGAGGCAGGCGCA
GGCTGCGGCAAGCTCGACCTCAAGAACGTGTTCCAAGCCCTCTTGACTGC
GCCAAACTCTCCTTTCCTGGACAAATACTGGCAACGTGAACCGTGCTACA
CGGCCACATCCATCCCTTGCTTGGCACAGGCGTGGACCATGGCAGATATG
GAAGATGCGATCGCTCGGGAATTCCTGTTGGCGGGCAGAGGGTTCTTCGA
AGAAGAAGGGAGCAAGATGAGCGGGGGTTGGAAAATGGCAACAGTCGGAG
AAGCCCGCGGATCATCGTTTGAAGATGCCAAGCTCCGACCAGAGGACGTC
CGAGCGGCCTTAGCCAAGCGAAGTGGAACGGTGGTTTTCAATAGTGTCGG
TGGCTCCGTGGCGGCGCTGGCAGGTGTATGCCTAGATGCCGTCGAGACTT
TCCTACTCCCCGTCGCGCTCAACCTCTACCTCACTGCCCCAGGACAAGCC
ACTTCCGCGCCCCCGCACACGGACAAACAAGATGTCTTTGTCTTGCAAAC
GCAAGGTCGAAAAAGATGGCGTGTCTACTCCCCCCCCGCTCCTGGGAAGA
AAGCTCATGTGGATCCGTTTGCCCGCGGAAAGGACGCGGACAATCTTTCC
CTCTCCGAGCTTGGCACCCCCCTGGTAGACATGGTGTTAGGACCAGGCCA
AATGCTCTACATGCCCGCCGGCTTCCCCCATACGACAGACACAGTCGTGG
GAATGACCGGAGAGAAGGACTCGTCGGTCCACTTGACTCTCGGCGTCGAT
ACACACATCTGGGGGTTAACCCACGCGACCCTCCGTGACTACTTCCTCTA
CCGCCTCAGCTACAATGGCGGCAGCAGCAGCGGTAGTGATATGATTCCTC
CTCCCCCTCCTTCTACCTTGGCTGACGCTTCCGCTTTCATTCAGTACCAT
AGTCAGTTGCCCATTGGGGCAAGGGAAGCACGTGCGGTGGCAGGAGGGGA
GGGAGGGGCGGAGAGGGTAGCACCAAAACGATGGTCGGAATTGAAGAAAG
TGCTAGGGGACGCCGTGATTGAAGAATTTAAACAAGTTATTTGCGCAGTG
GATGATCAAGATGTCTTGGCGAGCTTGAAGGAAAAAGGCGGGAAGGAGGA
AGAGGTGTTGAGGCAGGTGGTGGCGAAGGTTATTGACCACCACCGCTCCT
TGACAGCCGTGTTTAGGTCTATGTATGTAGATGTGAAATTCGGCTTGACG
GAGGTTCCGAGAGACTTGTCGTGTCTTCGCTCCCAAGCGTACTATCAGAA
TATTGAAAATACCATGCAGGCATTGGTAGAGTGGGCGGCCCCCCCCTCCC
TCCCTCCTTCCCCTGCTGCTGCTGCTGCTGGAGCTGCTGGAGGAGGAGGG
GGAGCGGGAGGGAGTAAAGGGGGGTTTGGTGGTGGTGGTGGGAAGAAGCC
GGCTGGTGGCAAGGGTGGGGGAAAGAAGAAGAAGTAG

protein sequence of NO18G01000.1

>NO18G01000.1-protein ID=NO18G01000.1-protein|Name=NO18G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=579bp
MKPLDVPGHYQRRSLRLIPVLLAVFLLLDAPASINAFVVRGLQQQRPQLQ
RPVSSHARLPSTFKPAITQATTSTAADSITTSTTIAPDETLGKILAEAGA
GCGKLDLKNVFQALLTAPNSPFLDKYWQREPCYTATSIPCLAQAWTMADM
EDAIAREFLLAGRGFFEEEGSKMSGGWKMATVGEARGSSFEDAKLRPEDV
RAALAKRSGTVVFNSVGGSVAALAGVCLDAVETFLLPVALNLYLTAPGQA
TSAPPHTDKQDVFVLQTQGRKRWRVYSPPAPGKKAHVDPFARGKDADNLS
LSELGTPLVDMVLGPGQMLYMPAGFPHTTDTVVGMTGEKDSSVHLTLGVD
THIWGLTHATLRDYFLYRLSYNGGSSSGSDMIPPPPPSTLADASAFIQYH
SQLPIGAREARAVAGGEGGAERVAPKRWSELKKVLGDAVIEEFKQVICAV
DDQDVLASLKEKGGKEEEVLRQVVAKVIDHHRSLTAVFRSMYVDVKFGLT
EVPRDLSCLRSQAYYQNIENTMQALVEWAAPPSLPPSPAAAAAGAAGGGG
GAGGSKGGFGGGGGKKPAGGKGGGKKKK*

mRNA from alignment at chr18:356738..358474-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G01000.1 ID=NO18G01000.1|Name=NO18G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp|location=Sequence derived from alignment at chr18:356738..358474- (Nannochloropsis oceanica)
ATGAAGCCACTAGATGTCCCTGGCCACTATCAAAGGCGTTCCCTGCGCTT
GATTCCCGTACTGCTTGCTGTCTTCCTCCTGCTTGATGCACCCGCCAGCA
TAAATGCATTTGTTGTACGCGGTCTCCAGCAACAACGACCTCAACTCCAG
AGGCCTGTCTCCTCCCATGCACGTCTCCCTTCCACTTTCAAACCCGCCAT
CACCCAAGCCACCACTTCGACGGCAGCTGACTCCATTACCACTTCCACAA
CCATTGCGCCTGATGAGACCCTGGGCAAAATCTTGGCCGAGGCAGGCGCA
GGCTGCGGCAAGCTCGACCTCAAGAACGTGTTCCAAGCCCTCTTGACTGC
GCCAAACTCTCCTTTCCTGGACAAATACTGGCAACGTGAACCGTGCTACA
CGGCCACATCCATCCCTTGCTTGGCACAGGCGTGGACCATGGCAGATATG
GAAGATGCGATCGCTCGGGAATTCCTGTTGGCGGGCAGAGGGTTCTTCGA
AGAAGAAGGGAGCAAGATGAGCGGGGGTTGGAAAATGGCAACAGTCGGAG
AAGCCCGCGGATCATCGTTTGAAGATGCCAAGCTCCGACCAGAGGACGTC
CGAGCGGCCTTAGCCAAGCGAAGTGGAACGGTGGTTTTCAATAGTGTCGG
TGGCTCCGTGGCGGCGCTGGCAGGTGTATGCCTAGATGCCGTCGAGACTT
TCCTACTCCCCGTCGCGCTCAACCTCTACCTCACTGCCCCAGGACAAGCC
ACTTCCGCGCCCCCGCACACGGACAAACAAGATGTCTTTGTCTTGCAAAC
GCAAGGTCGAAAAAGATGGCGTGTCTACTCCCCCCCCGCTCCTGGGAAGA
AAGCTCATGTGGATCCGTTTGCCCGCGGAAAGGACGCGGACAATCTTTCC
CTCTCCGAGCTTGGCACCCCCCTGGTAGACATGGTGTTAGGACCAGGCCA
AATGCTCTACATGCCCGCCGGCTTCCCCCATACGACAGACACAGTCGTGG
GAATGACCGGAGAGAAGGACTCGTCGGTCCACTTGACTCTCGGCGTCGAT
ACACACATCTGGGGGTTAACCCACGCGACCCTCCGTGACTACTTCCTCTA
CCGCCTCAGCTACAATGGCGGCAGCAGCAGCGGTAGTGATATGATTCCTC
CTCCCCCTCCTTCTACCTTGGCTGACGCTTCCGCTTTCATTCAGTACCAT
AGTCAGTTGCCCATTGGGGCAAGGGAAGCACGTGCGGTGGCAGGAGGGGA
GGGAGGGGCGGAGAGGGTAGCACCAAAACGATGGTCGGAATTGAAGAAAG
TGCTAGGGGACGCCGTGATTGAAGAATTTAAACAAGTTATTTGCGCAGTG
GATGATCAAGATGTCTTGGCGAGCTTGAAGGAAAAAGGCGGGAAGGAGGA
AGAGGTGTTGAGGCAGGTGGTGGCGAAGGTTATTGACCACCACCGCTCCT
TGACAGCCGTGTTTAGGTCTATGTATGTAGATGTGAAATTCGGCTTGACG
GAGGTTCCGAGAGACTTGTCGTGTCTTCGCTCCCAAGCGTACTATCAGAA
TATTGAAAATACCATGCAGGCATTGGTAGAGTGGGCGGCCCCCCCCTCCC
TCCCTCCTTCCCCTGCTGCTGCTGCTGCTGGAGCTGCTGGAGGAGGAGGG
GGAGCGGGAGGGAGTAAAGGGGGGTTTGGTGGTGGTGGTGGGAAGAAGCC
GGCTGGTGGCAAGGGTGGGGGAAAGAAGAAGAAGTAG

Coding sequence (CDS) from alignment at chr18:356738..358474-

>NO18G01000.1 ID=NO18G01000.1|Name=NO18G01000.1|organism=Nannochloropsis oceanica|type=CDS|length=1737bp|location=Sequence derived from alignment at chr18:356738..358474- (Nannochloropsis oceanica)
ATGAAGCCACTAGATGTCCCTGGCCACTATCAAAGGCGTTCCCTGCGCTT
GATTCCCGTACTGCTTGCTGTCTTCCTCCTGCTTGATGCACCCGCCAGCA
TAAATGCATTTGTTGTACGCGGTCTCCAGCAACAACGACCTCAACTCCAG
AGGCCTGTCTCCTCCCATGCACGTCTCCCTTCCACTTTCAAACCCGCCAT
CACCCAAGCCACCACTTCGACGGCAGCTGACTCCATTACCACTTCCACAA
CCATTGCGCCTGATGAGACCCTGGGCAAAATCTTGGCCGAGGCAGGCGCA
GGCTGCGGCAAGCTCGACCTCAAGAACGTGTTCCAAGCCCTCTTGACTGC
GCCAAACTCTCCTTTCCTGGACAAATACTGGCAACGTGAACCGTGCTACA
CGGCCACATCCATCCCTTGCTTGGCACAGGCGTGGACCATGGCAGATATG
GAAGATGCGATCGCTCGGGAATTCCTGTTGGCGGGCAGAGGGTTCTTCGA
AGAAGAAGGGAGCAAGATGAGCGGGGGTTGGAAAATGGCAACAGTCGGAG
AAGCCCGCGGATCATCGTTTGAAGATGCCAAGCTCCGACCAGAGGACGTC
CGAGCGGCCTTAGCCAAGCGAAGTGGAACGGTGGTTTTCAATAGTGTCGG
TGGCTCCGTGGCGGCGCTGGCAGGTGTATGCCTAGATGCCGTCGAGACTT
TCCTACTCCCCGTCGCGCTCAACCTCTACCTCACTGCCCCAGGACAAGCC
ACTTCCGCGCCCCCGCACACGGACAAACAAGATGTCTTTGTCTTGCAAAC
GCAAGGTCGAAAAAGATGGCGTGTCTACTCCCCCCCCGCTCCTGGGAAGA
AAGCTCATGTGGATCCGTTTGCCCGCGGAAAGGACGCGGACAATCTTTCC
CTCTCCGAGCTTGGCACCCCCCTGGTAGACATGGTGTTAGGACCAGGCCA
AATGCTCTACATGCCCGCCGGCTTCCCCCATACGACAGACACAGTCGTGG
GAATGACCGGAGAGAAGGACTCGTCGGTCCACTTGACTCTCGGCGTCGAT
ACACACATCTGGGGGTTAACCCACGCGACCCTCCGTGACTACTTCCTCTA
CCGCCTCAGCTACAATGGCGGCAGCAGCAGCGGTAGTGATATGATTCCTC
CTCCCCCTCCTTCTACCTTGGCTGACGCTTCCGCTTTCATTCAGTACCAT
AGTCAGTTGCCCATTGGGGCAAGGGAAGCACGTGCGGTGGCAGGAGGGGA
GGGAGGGGCGGAGAGGGTAGCACCAAAACGATGGTCGGAATTGAAGAAAG
TGCTAGGGGACGCCGTGATTGAAGAATTTAAACAAGTTATTTGCGCAGTG
GATGATCAAGATGTCTTGGCGAGCTTGAAGGAAAAAGGCGGGAAGGAGGA
AGAGGTGTTGAGGCAGGTGGTGGCGAAGGTTATTGACCACCACCGCTCCT
TGACAGCCGTGTTTAGGTCTATGTATGTAGATGTGAAATTCGGCTTGACG
GAGGTTCCGAGAGACTTGTCGTGTCTTCGCTCCCAAGCGTACTATCAGAA
TATTGAAAATACCATGCAGGCATTGGTAGAGTGGGCGGCCCCCCCCTCCC
TCCCTCCTTCCCCTGCTGCTGCTGCTGCTGGAGCTGCTGGAGGAGGAGGG
GGAGCGGGAGGGAGTAAAGGGGGGTTTGGTGGTGGTGGTGGGAAGAAGCC
GGCTGGTGGCAAGGGTGGGGGAAAGAAGAAGAAGTAG

Synonyms

Publications