NO18G00990.2, NO18G00990.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00990.2
Unique NameNO18G00990.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3267
Alignment locationchr18:356677..360104 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:356677..360104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO18G00990.2 vs.
Match: EWM23338.1 (uncharacterized protein Naga_100053g35 [Nannochloropsis gaditana])

HSP 1 Score: 285.4 bits (729), Expect = 1.400e-73
Identity = 154/201 (76.62%), Postives = 169/201 (84.08%), Query Frame = 0 
Query:    1 MKTSCLALLLLLVAVAVSKQVASFVLPSSAPSFAASSAIVAPRGPVSSSTLVAPLNVVITPDGSPSMQEYRKKVLQDLVERKNNGELDGYQLFDMIVAKWGVPYGVELRRLDFAGKKLLYINVMWKYLGQSSFPLSERQYLEHLEYIARKLVQWGKVAEFKKDLADCRKKPNAYFGYAVSFNIAVSEEAIEQFVEDARISK 202
            MKT     LL L+AV +   VASF+ PSS    +ASS +   R   S+    +PL VVITPDGSPSMQEYRKKVLQDLVERKN GELDGYQLFDMIVAKWGVPYGVELRR+DFAGKKLLYINVMWKYLGQ SFPL+ERQYLEHLEYI+RKLVQWGKVA+FKKDLA+CRKKPNAYFGYAVSFN+ VSE  I+QFVEDARIS+
Sbjct:    1 MKTLFSTSLLSLLAVLMCAPVASFI-PSSP---SASSGVATVRRSFSA----SPLRVVITPDGSPSMQEYRKKVLQDLVERKNIGELDGYQLFDMIVAKWGVPYGVELRRMDFAGKKLLYINVMWKYLGQQSFPLNERQYLEHLEYISRKLVQWGKVADFKKDLAECRKKPNAYFGYAVSFNVPVSEAEIDQFVEDARISR 193
The following BLAST results are available for this feature:
BLAST of NO18G00990.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23338.11.400e-7376.62uncharacterized protein Naga_100053g35 [Nannochlor... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00990NO18G00990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00990.2NO18G00990.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00990.2.cds1NO18G00990.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00990.2.cds2NO18G00990.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00990.2 ID=NO18G00990.2|Name=NO18G00990.2|organism=Nannochloropsis oceanica|type=mRNA|length=3267bp
AGTTCCACATTTTATGTCTTTCTTTCACTGTCAGTCTCCCCCCCTAGCCT
TCTTATGTACACTACTTCTTCTTCTTTCCCCCACCCTTGCCACCAGCCGG
CTTCTTCCCACCACCACCACCAAACCCCCCTTTACTCCCTCCCGCTCCCC
CTCCTCCTCCAGCAGCTCCAGCAGCAGCAGCAGCAGGGGAAGGAGGGAGG
GAGGGGGGGGCCGCCCACTCTACCAATGCCTGCATGGTATTTTCAATATT
CTGATAGTACGCTTGGGAGCGAAGACACGACAAGTCTCTCGGAACCTCCG
TCAAGCCGAATTTCACATCTACATACATAGACCTAAACACGGCTGTCAAG
GAGCGGTGGTGGTCAATAACCTTCGCCACCACCTGCCTCAACACCTCTTC
CTCCTTCCCGCCTTTTTCCTTCAAGCTCGCCAAGACATCTTGATCATCCA
CTGCGCAAATAACTTGTTTAAATTCTTCAATCACGGCGTCCCCTAGCACT
TTCTTCAATTCCGACCATCGTTTTGGTGCTACCCTCTCCGCCCCTCCCTC
CCCTCCTGCCACCGCACGTGCTTCCCTTGCCCCAATGGGCAACTGACTAT
GGTACTGAATGAAAGCGGAAGCGTCAGCCAAGGTAGAAGGAGGGGGAGGA
GGAATCATATCACTACCGCTGCTGCTGCCGCCATTGTAGCTGAGGCGGTA
GAGGAAGTAGTCACGGAGGGTCGCGTGGGTTAACCCCCAGATGTGTGTAT
CGACGCCGAGAGTCAAGTGGACCGACGAGTCCTTCTCTCCGGTCATTCCC
ACGACTGTGTCTGTCGTATGGGGGAAGCCGGCGGGCATGTAGAGCATTTG
GCCTGGTCCTAACACCATGTCTACCAGGGGGGTGCCAAGCTCGGAGAGGG
AAAGATTGTCCGCGTCCTTTCCGCGGGCAAACGGATCCACATGAGCTTTC
TTCCCAGGAGCGGGGGGGGAGTAGACACGCCATCTTTTTCGACCTTGCGT
TTGCAAGACAAAGACATCTTGTTTGTCCGTGTGCGGGGGCGCGGAAGTGG
CTTGTCCTGGGGCAGTGAGGTAGAGGTTGAGCGCGACGGGGAGTAGGAAA
GTCTCGACGGCATCTAGGCATACACCTGCCAGCGCCGCCACGGAGCCACC
GACACTATTGAAAACCACCGTTCCACTTCGCTTGGCTAAGGCCGCTCGGA
CGTCCTCTGGTCGGAGCTTGGCATCTTCAAACGATGATCCGCGGGCTTCT
CCGACTGTTGCCATTTTCCAACCCCCGCTCATCTTGCTCCCTTCTTCTTC
GAAGAACCCTCTGCCCGCCAACAGGAATTCCCGAGCGATCGCATCTTCCA
TATCTGCCATGGTCCACGCCTGTGCCAAGCAAGGGATGGATGTGGCCGTG
TAGCACGGTTCACGTTGCCAGTATTTGTCCAGGAAAGGAGAGTTTGGCGC
AGTCAAGAGGGCTTGGAACACGTTCTTGAGGTCGAGCTTGCCGCAGCCTG
CGCCTGCCTCGGCCAAGATTTTGCCCAGGGTCTCATCAGGCGCAATGGTT
GTGGAAGTGGTAATGGAGTCAGCTGCCGTCGAAGTGGTGGCTTGGGTGAT
GGCGGGTTTGAAAGTGGAAGGGAGACGTGCATGGGAGGAGACAGGCCTCT
GGAGTTGAGGTCGTTGTTGCTGGAGACCGCGTACAACAAATGCATTTATG
CTGGCGGGTGCATCAAGCAGGAGGAAGACAGCAAGCAGTACGGGAATCAA
GCGCAGGGAACGCCTTTGATAGTGGCCAGGGACATCTAGTGGCTTCATCT
CTCTGTGGTATTGTGCGAAGGCAGGGTTGCTGAGGGATTTTGATGTGGAA
GTGCTCGGCCTCTTTCTGTCGAGGCGGGAGGTCGAGAAGAACCGTTTTGG
AGGGACAGGTGCTGACGGTGCAATGCACGCGCCCTCCTCTGCCTGTCCAA
ATGCATCCGATCGTAAATATCAAGAAGGAAGGGAAGCCTCGGGACTGGCA
AGAGCATATCATAAGGTATCATGGAACCGTGAGGTTATCTCCGCGCGTCG
CTTGGCACAAATTTATTGCCACCCAAGGGGATGAAATCTCTCTGATGCAT
CGATCCAAAGCCTCATAAGCTTCTTGCCCCACGCCCACACCTTTCACAGG
CACGGCACTACAGAACAACCTCCTCCACCACCGCAAAAATGAAGACATCG
TGTTTGGCGCTGCTACTGCTGCTCGTGGCGGTGGCTGTGAGCAAGCAAGT
GGCATCTTTTGTTCTCCCTTCTTCTGCCCCCTCCTTTGCCGCCTCGTCAG
CCATCGTAGCCCCTCGCGGGCCGGTCTCATCCTCCACTTTGGTAGCCCCG
CTGAACGTGGTCATAACCCCTGATGGTTCTCCGTCCATGCAAGAGTATCG
TAAGAAGGTACTGCAGGACTTGGTTGAGCGGAAGAACAACGGGGAGCTGG
ATGGGTACCAGCTTTTCGACATGATAGTGGCCAAGTGGGGGGTTCCTTAT
GGGGTGGAGCTTCGGCGGTTAGACTTTGCGGGAAAGAAGCTTCTGTACAT
AAACGTTATGTGGAAATACTTGGGACAGTCTTCTTTTCCCTTATCGGAGC
GACAGTATTTAGAGCATTTGGAGTACATTGCCCGCAAACTAGTGCAGTGG
GGAAAGGTGGCGGAATTCAAAAAGGACCTCGCCGACTGCCGGAAGAAGCC
CAACGCTTATTTCGGGTACGCCGTCTCATTTAATATCGCGGTGTCGGAGG
AGGCGATTGAGCAGTTTGTGGAAGATGCGCGCATTTCCAAGGTAAGTAAG
TCTTGAAGGCCTCTGCGTCTTGTACGTGTTCGAGACATGTTAAGGTCAGC
GTGCCTTTGTGTGAATGAGACTATCAACCATTTGTCGCCTGCTGCATTTG
TATCTAGCGTTTATAAAAACTACTATACAATCTTTCCATTTACCAACCCG
CGCAGGAGGAGGACGAGTAAGGATACGAAGCAGCGGGACCCAACAAAACT
GGAATACAGACAGGCACCCATAGAACGTGCGCACGTAGTAGCCTTTTCCA
CCGTCATTATGTTGTAGATAGAAATGTGTGGCTGGTGGATCAAAAGGGAA
AGAGAAGTTTTGCAGTCGCCGTCAGAGGAAAGATGCGGCGATGGTGAATG
GACAAGCGAAGGAAGACGGAAAGGAGACAGAGAGAGCGTTAGACTTTCCA
TGAGTTATTGGAGAAGGGGAGGTTCCACAGTTGTAAAAGTAATCTAAAGA
GAAGTAAAGAAGCAAGA
back to top

protein sequence of NO18G00990.2

>NO18G00990.2-protein ID=NO18G00990.2-protein|Name=NO18G00990.2|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MKTSCLALLLLLVAVAVSKQVASFVLPSSAPSFAASSAIVAPRGPVSSST
LVAPLNVVITPDGSPSMQEYRKKVLQDLVERKNNGELDGYQLFDMIVAKW
GVPYGVELRRLDFAGKKLLYINVMWKYLGQSSFPLSERQYLEHLEYIARK
LVQWGKVAEFKKDLADCRKKPNAYFGYAVSFNIAVSEEAIEQFVEDARIS
KVSKS*
back to top

mRNA from alignment at chr18:356677..360104+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00990.2 ID=NO18G00990.2|Name=NO18G00990.2|organism=Nannochloropsis oceanica|type=mRNA|length=3428bp|location=Sequence derived from alignment at chr18:356677..360104+ (Nannochloropsis oceanica)
AGTTCCACATTTTATGTCTTTCTTTCACTGTCAGTCTCCCCCCCTAGCCT
TCTTATGTACACTACTTCTTCTTCTTTCCCCCACCCTTGCCACCAGCCGG
CTTCTTCCCACCACCACCACCAAACCCCCCTTTACTCCCTCCCGCTCCCC
CTCCTCCTCCAGCAGCTCCAGCAGCAGCAGCAGCAGGGGAAGGAGGGAGG
GAGGGGGGGGCCGCCCACTCTACCAATGCCTGCATGGTATTTTCAATATT
CTGATAGTACGCTTGGGAGCGAAGACACGACAAGTCTCTCGGAACCTCCG
TCAAGCCGAATTTCACATCTACATACATAGACCTAAACACGGCTGTCAAG
GAGCGGTGGTGGTCAATAACCTTCGCCACCACCTGCCTCAACACCTCTTC
CTCCTTCCCGCCTTTTTCCTTCAAGCTCGCCAAGACATCTTGATCATCCA
CTGCGCAAATAACTTGTTTAAATTCTTCAATCACGGCGTCCCCTAGCACT
TTCTTCAATTCCGACCATCGTTTTGGTGCTACCCTCTCCGCCCCTCCCTC
CCCTCCTGCCACCGCACGTGCTTCCCTTGCCCCAATGGGCAACTGACTAT
GGTACTGAATGAAAGCGGAAGCGTCAGCCAAGGTAGAAGGAGGGGGAGGA
GGAATCATATCACTACCGCTGCTGCTGCCGCCATTGTAGCTGAGGCGGTA
GAGGAAGTAGTCACGGAGGGTCGCGTGGGTTAACCCCCAGATGTGTGTAT
CGACGCCGAGAGTCAAGTGGACCGACGAGTCCTTCTCTCCGGTCATTCCC
ACGACTGTGTCTGTCGTATGGGGGAAGCCGGCGGGCATGTAGAGCATTTG
GCCTGGTCCTAACACCATGTCTACCAGGGGGGTGCCAAGCTCGGAGAGGG
AAAGATTGTCCGCGTCCTTTCCGCGGGCAAACGGATCCACATGAGCTTTC
TTCCCAGGAGCGGGGGGGGAGTAGACACGCCATCTTTTTCGACCTTGCGT
TTGCAAGACAAAGACATCTTGTTTGTCCGTGTGCGGGGGCGCGGAAGTGG
CTTGTCCTGGGGCAGTGAGGTAGAGGTTGAGCGCGACGGGGAGTAGGAAA
GTCTCGACGGCATCTAGGCATACACCTGCCAGCGCCGCCACGGAGCCACC
GACACTATTGAAAACCACCGTTCCACTTCGCTTGGCTAAGGCCGCTCGGA
CGTCCTCTGGTCGGAGCTTGGCATCTTCAAACGATGATCCGCGGGCTTCT
CCGACTGTTGCCATTTTCCAACCCCCGCTCATCTTGCTCCCTTCTTCTTC
GAAGAACCCTCTGCCCGCCAACAGGAATTCCCGAGCGATCGCATCTTCCA
TATCTGCCATGGTCCACGCCTGTGCCAAGCAAGGGATGGATGTGGCCGTG
TAGCACGGTTCACGTTGCCAGTATTTGTCCAGGAAAGGAGAGTTTGGCGC
AGTCAAGAGGGCTTGGAACACGTTCTTGAGGTCGAGCTTGCCGCAGCCTG
CGCCTGCCTCGGCCAAGATTTTGCCCAGGGTCTCATCAGGCGCAATGGTT
GTGGAAGTGGTAATGGAGTCAGCTGCCGTCGAAGTGGTGGCTTGGGTGAT
GGCGGGTTTGAAAGTGGAAGGGAGACGTGCATGGGAGGAGACAGGCCTCT
GGAGTTGAGGTCGTTGTTGCTGGAGACCGCGTACAACAAATGCATTTATG
CTGGCGGGTGCATCAAGCAGGAGGAAGACAGCAAGCAGTACGGGAATCAA
GCGCAGGGAACGCCTTTGATAGTGGCCAGGGACATCTAGTGGCTTCATCT
CTCTGTGGTATTGTGCGAAGGCAGGGTTGCTGAGGGATTTTGATGTGGAA
GTGCTCGGCCTCTTTCTGTCGAGGCGGGAGGTCGAGAAGAACCGTTTTGG
AGGGACAGGTGCTGACGGTGCAATGCACGCGCCCTCCTCTGCCTGTCCAA
ATGCATCCGATCGTAAATATCAAGAAGGAAGGGAAGCCTCGGGACTGGCA
AGAGCATATCATAAGGTATCATGGAACCGTGAGGTTATCTCCGCGCGTCG
CTTGGCACAAATTTATTGCCACCCAAGGGGATGAAATCTCTCTGATGCAT
CGATCCAAAGCCTCATAAGCTTCTTGCCCCACGCCCACACCTTTCACAGG
CACGGCACTACAGAACAACCTCCTCCACCACCGCAAAAATGAAGACATCG
TGTTTGGCGCTGCTACTGCTGCTCGTGGCGGTGGCTGTGAGCAAGCAAGT
GGCATCTTTTGTTCTCCCTTCTTCTGCCCCCTCCTTTGCCGCCTCGTCAG
CCATCGTAGCCCCTCGCGGGCCGGTCTCATCCTCCACTTTGGTAGCCCCG
CTGAACGTGGTCATAACCCCTGATGGTTCTCCGTCCATGCAAGAGTATCG
TAAGAAGGTACTGCAGGACTTGGTTGAGCGGAAGAACAACGGGGAGCTGG
ATGGGTACCAGCTTTTCGACATGATAGTGGCCAAGTGGGGGGTTCCTTAT
GGGGTGGAGCTTCGGCGGTTAGACTTTGCGGGAAAGAAGCTTCTGTACAT
AAACGTTATGTGGAAATACTTGGGACAGTCTTCTTTTCCCTTATCGGAGC
GACAGTATTTAGAGCATTTGGTGAGAGCTTGGGGGGATGAGAGGAGGGAT
TGAGTGGGTGTAAGTGAAGGGATAGCAGGGAGAGAAAATGCACCATTTTG
GAGGGCCAGACGCATGTAACCGTCAAAGCCTGAGTGCTTTCGTCTATTCA
CCCGCTCCCCATCAACCTGCCCCCCTTGTAGGAGTACATTGCCCGCAAAC
TAGTGCAGTGGGGAAAGGTGGCGGAATTCAAAAAGGACCTCGCCGACTGC
CGGAAGAAGCCCAACGCTTATTTCGGGTACGCCGTCTCATTTAATATCGC
GGTGTCGGAGGAGGCGATTGAGCAGTTTGTGGAAGATGCGCGCATTTCCA
AGGTAAGTAAGTCTTGAAGGCCTCTGCGTCTTGTACGTGTTCGAGACATG
TTAAGGTCAGCGTGCCTTTGTGTGAATGAGACTATCAACCATTTGTCGCC
TGCTGCATTTGTATCTAGCGTTTATAAAAACTACTATACAATCTTTCCAT
TTACCAACCCGCGCAGGAGGAGGACGAGTAAGGATACGAAGCAGCGGGAC
CCAACAAAACTGGAATACAGACAGGCACCCATAGAACGTGCGCACGTAGT
AGCCTTTTCCACCGTCATTATGTTGTAGATAGAAATGTGTGGCTGGTGGA
TCAAAAGGGAAAGAGAAGTTTTGCAGTCGCCGTCAGAGGAAAGATGCGGC
GATGGTGAATGGACAAGCGAAGGAAGACGGAAAGGAGACAGAGAGAGCGT
TAGACTTTCCATGAGTTATTGGAGAAGGGGAGGTTCCACAGTTGTAAAAG
TAATCTAAAGAGAAGTAAAGAAGCAAGA
back to top

Coding sequence (CDS) from alignment at chr18:356677..360104+

>NO18G00990.2 ID=NO18G00990.2|Name=NO18G00990.2|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at chr18:356677..360104+ (Nannochloropsis oceanica)
ATGAAGACATCGTGTTTGGCGCTGCTACTGCTGCTCGTGGCGGTGGCTGT
GAGCAAGCAAGTGGCATCTTTTGTTCTCCCTTCTTCTGCCCCCTCCTTTG
CCGCCTCGTCAGCCATCGTAGCCCCTCGCGGGCCGGTCTCATCCTCCACT
TTGGTAGCCCCGCTGAACGTGGTCATAACCCCTGATGGTTCTCCGTCCAT
GCAAGAGTATCGTAAGAAGGTACTGCAGGACTTGGTTGAGCGGAAGAACA
ACGGGGAGCTGGATGGGTACCAGCTTTTCGACATGATAGTGGCCAAGTGG
GGGGTTCCTTATGGGGTGGAGCTTCGGCGGTTAGACTTTGCGGGAAAGAA
GCTTCTGTACATAAACGTTATGTGGAAATACTTGGGACAGTCTTCTTTTC
CCTTATCGGAGCGACAGTATTTAGAGCATTTGGAGTACATTGCCCGCAAA
CTAGTGCAGTGGGGAAAGGTGGCGGAATTCAAAAAGGACCTCGCCGACTG
CCGGAAGAAGCCCAACGCTTATTTCGGGTACGCCGTCTCATTTAATATCG
CGGTGTCGGAGGAGGCGATTGAGCAGTTTGTGGAAGATGCGCGCATTTCC
AAGGTAAGTAAGTCTTGA
back to top
Synonyms
Publications