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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr18 | genome | chr18:352085..354668 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G00970.1 vs.
Match: EWM23311.1 (uv radiation resistance-associated protein [Nannochloropsis gaditana]) HSP 1 Score: 425.6 bits (1093), Expect = 2.400e-115 Identity = 284/583 (48.71%), Postives = 359/583 (61.58%), Query Frame = 0
Query: 6 EEEDTAASPAAVDQRESGSLLARLLRQLRTVSVRNLAVSHDNDDGRPCLPPSTYVQILARQPPSSSSATTTTRPP----------FRVYYTSEVAPYTHNPIWLVLDLEPLENDDMNNGDEGEYEEWEQEGGEEGSIEPS-LSGEEICIRVFLATPTDDDNVGEINRSSDLITTITTKQRGRRRRAAPHLGRLQRGHHPSITPSPPLATFLFHLPRLWCLPPTVKLSQLHLPAFPATCLLATGEGGTGLLVEEGVGEALGLELNGGRRGDAPHLLDEQYVEELEEYQRRPPFA-SFSSLSSKTPNGAMRKLTLASPSSSSSCSSSQKREEESITNYRAEQAKLQAMLQIKRLELAREERALAEEEEGLMEEGRVLHALMKRHASLVIEAAKIEKETMDVEEVLIQKEFVVALRQRKLVEELQRIYPIERRSGEQEYRIRGLELPADTVNTTRDDDLIASALGYVCHVLVMLSKYLEVPLRYALECRSSRSLIQDATVAYAVFPLYKRGVERERFEWAVYLLKKNIQQLLCARGVSRMLLPGEREASGGGGGGGGSGGLFREPPYCSHILQNLQALFIHELASS 577
E E+ A + + R+ G +L RLLRQLR++S+RNL +S D+ + P PPSTY+Q+LA PPSSS +++ PP FRV+YTS+VAP T+NP WLVLDLEP E+ + E + E G PS GEE C+RVF A D+ V ++R + L +Q G+ R P T PLA F+F LP +WCLPP++KL+ LHLP +CLLATGE G GLLV VG LGLE GG AP+LLDE Y+ LEE Q RP F+ F S + + G LAS + + R E +L+A+L+ + LA EE AL EEEE L ++ A M L ++ E EE L++KEF+VA RQ++LV L+RIYPIE+ +GEQEYRIRGLELPAD V+ +DD+++ASALGYVCHVLVMLSKYLEVPLRYALE R+SRSLI+DATV Y VFPLY+RGVERERFEWA+YLL+K+IQ LL ARGV LLPG + G GG GG G +PP +HILQNL+ALF HEL+ S
Sbjct: 2 EAEEIAVTSTS---RKEGRMLFRLLRQLRSISIRNLGISTDDVNSAP--PPSTYIQVLAPPPPSSSPPSSS--PPLTPLVAPQADFRVHYTSQVAPSTYNPTWLVLDLEPF----------AEHTDEEGKNKEGGCRPPSEAHGEEFCVRVFRAPGPYDEGV-NVDRET-LSDHFRERQNGKWRGWWP---------CQPATGESPLAEFVFRLPDVWCLPPSMKLAHLHLPCRHPSCLLATGEDGKGLLVSASVGVGLGLE--GGGTDPAPYLLDEPYLAGLEELQHRPSFSPGFPSARASSVAGHGLPEGLASRDLAPEGRGPKDAPSPVPVWLRTEARRLEALLEAEEGALAVEEEALVEEEEDLRGLVAMVEAEMGFGERLAGATRRLLGEERAREESLLRKEFLVARRQQRLVAGLRRIYPIEQGAGEQEYRIRGLELPADVVHAPKDDEVVASALGYVCHVLVMLSKYLEVPLRYALEPRASRSLIRDATVGYPVFPLYRRGVERERFEWAIYLLRKDIQGLLHARGVPTALLPGRK----GVGGTGGQWGFLPDPPQGAHILQNLEALFTHELSQS 550
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G00970.1 ID=NO18G00970.1|Name=NO18G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=2414bp
CTCCTCCTCCTCCTCCTCCTCCTCATCTCCTGCTTCCTCTTCCTCCTCTG
TCTCCATCTCGCCCTCGGCATCAACTTCCACCCTTTTCAGATGCCTCAGC
GAGCCGACTCGTGTGTTGGAGTACGATGTCGACTTTTCCTGGACCTCTTC
AGTTGCTGTTGCTGTTGCTGCTGCTGCGAGGGTAAATGTGCCAGTGCCCG
TGCTGCCGTGGGGATTTGTCGTGCTGCTGCTCAGAAAGCAGAAAAATAAA
CCCAGGATCAGGCACAAGGAGGCCATCTTCGAGGAGGACAGCCGCATAAT
GATGAGGCTGTTGCGTGTGTGGGCGGGGTGTGGGTGTGTGGGGCGTGAGT
AGTGAGGGCAATATTTATTAGTTTTGAAAGAAGGCATGGGCCTCAAGAAC
ACGACTGCGTTCCGATTCGAGCCAACGGTATTGGCAGCAAATATTAACGA
GCAAGCAGGCCTTTGACCACTTCACACCACACCATTCCACACACAGAGAG
ATAAGCTCAAGGATAAGCTTGTGGTAAACATTGCGGGGTATTAGGAGGTT
GCTCACTCCGTCGCTCGCAATAGCATGGCCGGGGAAGGGGAGGAGGAAGA
CACTGCCGCTTCTCCCGCGGCGGTCGACCAACGAGAATCAGGAAGCCTTT
TGGCGCGCTTGCTCCGACAGCTCCGCACCGTCTCCGTCCGCAATCTAGCC
GTCAGCCATGACAACGACGATGGACGTCCTTGCCTCCCACCTTCGACATA
CGTCCAAATACTGGCCCGGCAGCCGCCCTCCTCCTCTTCCGCCACCACTA
CTACTAGACCACCATTCCGCGTCTACTATACAAGCGAGGTGGCTCCCTAC
ACGCACAACCCCATCTGGCTTGTTCTAGACCTAGAACCTTTAGAGAACGA
CGACATGAATAACGGCGACGAGGGCGAGTACGAAGAATGGGAGCAGGAAG
GGGGAGAGGAAGGCTCGATAGAACCCAGCCTCTCCGGGGAAGAAATCTGC
ATCCGCGTCTTTCTTGCGACCCCGACCGACGACGACAATGTCGGAGAGAT
AAACCGGTCTTCCGATCTCATAACCACCATAACCACCAAACAACGAGGAA
GGAGAAGGAGAGCCGCACCTCATCTTGGACGACTCCAACGTGGACACCAT
CCCTCCATCACCCCTTCTCCTCCCCTCGCCACCTTCCTCTTCCACCTCCC
CCGCCTCTGGTGCCTACCCCCTACCGTCAAACTATCACAGTTGCACCTGC
CTGCTTTTCCGGCTACGTGTTTGTTGGCCACGGGGGAGGGTGGGACAGGG
CTGTTGGTGGAGGAAGGGGTGGGGGAAGCGTTGGGGTTGGAATTGAATGG
AGGAAGGAGAGGGGATGCACCGCATTTGCTCGATGAGCAGTACGTGGAGG
AGCTGGAAGAGTACCAGCGCCGTCCTCCCTTCGCTTCTTTCTCCTCCTTG
TCCAGTAAGACACCGAATGGGGCGATGCGCAAGCTGACCTTGGCATCGCC
TTCTTCCTCTTCGTCCTGCTCCTCCTCCCAAAAACGAGAGGAGGAATCAA
TAACAAATTACCGTGCTGAACAAGCCAAATTACAAGCCATGCTTCAAATA
AAGCGTCTGGAGCTCGCGAGAGAAGAAAGAGCACTAGCAGAGGAAGAAGA
GGGATTAATGGAGGAAGGCCGCGTGCTTCACGCCCTAATGAAACGTCACG
CATCCCTAGTCATAGAAGCGGCCAAGATAGAGAAAGAAACGATGGATGTG
GAGGAAGTCTTAATTCAGAAAGAATTTGTGGTGGCGTTACGGCAACGAAA
GCTGGTAGAAGAGCTTCAGAGAATTTATCCCATTGAACGCAGGAGTGGTG
AGCAAGAATATCGCATTCGGGGATTGGAGTTGCCTGCAGACACAGTGAAC
ACGACGAGGGACGATGACCTCATCGCGTCTGCATTGGGGTATGTGTGTCA
TGTGCTTGTGATGCTGTCCAAGTACTTAGAGGTTCCATTACGGTATGCTC
TTGAATGTCGGTCTTCCCGATCCCTCATCCAGGATGCCACCGTTGCGTAC
GCGGTGTTCCCTCTGTATAAACGAGGGGTGGAACGAGAGCGGTTCGAATG
GGCGGTGTACTTATTGAAGAAAAATATTCAGCAGCTCTTGTGCGCGCGAG
GCGTGTCCCGGATGCTGCTCCCGGGGGAAAGAGAAGCAAGTGGAGGGGGA
GGAGGAGGAGGAGGAAGTGGCGGCTTGTTCCGAGAGCCACCATACTGTTC
GCATATTCTCCAAAATTTACAGGCACTTTTCATTCACGAACTGGCTTCAT
CCTCCACAACCCTGTAAAGTATTGTAGATCGCACGGGCACATTTTTAAAT
GGCTTGAGGAAACGAAATAAAAGGAAAACTTAAAATGGGAAAAGAAGGAA
AGCCAGCAACGAAC back to topprotein sequence of NO18G00970.1 >NO18G00970.1-protein ID=NO18G00970.1-protein|Name=NO18G00970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp
MAGEGEEEDTAASPAAVDQRESGSLLARLLRQLRTVSVRNLAVSHDNDDG
RPCLPPSTYVQILARQPPSSSSATTTTRPPFRVYYTSEVAPYTHNPIWLV
LDLEPLENDDMNNGDEGEYEEWEQEGGEEGSIEPSLSGEEICIRVFLATP
TDDDNVGEINRSSDLITTITTKQRGRRRRAAPHLGRLQRGHHPSITPSPP
LATFLFHLPRLWCLPPTVKLSQLHLPAFPATCLLATGEGGTGLLVEEGVG
EALGLELNGGRRGDAPHLLDEQYVEELEEYQRRPPFASFSSLSSKTPNGA
MRKLTLASPSSSSSCSSSQKREEESITNYRAEQAKLQAMLQIKRLELARE
ERALAEEEEGLMEEGRVLHALMKRHASLVIEAAKIEKETMDVEEVLIQKE
FVVALRQRKLVEELQRIYPIERRSGEQEYRIRGLELPADTVNTTRDDDLI
ASALGYVCHVLVMLSKYLEVPLRYALECRSSRSLIQDATVAYAVFPLYKR
GVERERFEWAVYLLKKNIQQLLCARGVSRMLLPGEREASGGGGGGGGSGG
LFREPPYCSHILQNLQALFIHELASSSTTL* back to topmRNA from alignment at chr18:352085..354668- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G00970.1 ID=NO18G00970.1|Name=NO18G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=2584bp|location=Sequence derived from alignment at chr18:352085..354668- (Nannochloropsis oceanica)
CTCCTCCTCCTCCTCCTCCTCCTCATCTCCTGCTTCCTCTTCCTCCTCTG
TCTCCATCTCGCCCTCGGCATCAACTTCCACCCTTTTCAGATGCCTCAGC
GAGCCGACTCGTGTGTTGGAGTACGATGTCGACTTTTCCTGGACCTCTTC
AGTTGCTGTTGCTGTTGCTGCTGCTGCGAGGGTAAATGTGCCAGTGCCCG
TGCTGCCGTGGGGATTTGTCGTGCTGCTGCTCAGAAAGCAGAAAAATAAA
CCCAGGATCAGGCACAAGGAGGCCATCTTCGAGGAGGACAGCCGCATAAT
GATGAGGCTGTTGCGTGTGTGGGCGGGGTGTGGGTGTGTGGGGCGTGAGT
AGTGAGGGCAATATTTATTAGTTTTGAAAGAAGGCATGGGCCTCAAGAAC
ACGACTGCGTTCCGATTCGAGCCAACGGTATTGGCAGCAAATATTAACGA
GCAAGCAGGCCTTTGACCACTTCACACCACACCATTCCACACACAGAGAG
ATAAGCTCAAGGATAAGCTTGTGGTAAACATTGCGGGGTATTAGGAGGTT
GCTCACTCCGTCGCTCGCAATAGCATGGCCGGGGAAGGGGAGGAGGAAGA
CACTGCCGCTTCTCCCGCGGCGGTCGACCAACGAGAATCAGGAAGCCTTT
TGGCGGTGCGTATAAAGCCTTATTTTTTTAGAATAAGGGAATCATGCCCA
TAAGACGCAGTGTCCTGACGCGTTGCTGTTGGTGGGAGCCCACTTCATTC
TTTGAGAAAGCTAAGCCCGTCGGCACCCTCCGCCCTACAACACCCTCACC
TCCCCCCTCATCTTCCCAATCACAGCGCTTGCTCCGACAGCTCCGCACCG
TCTCCGTCCGCAATCTAGCCGTCAGCCATGACAACGACGATGGACGTCCT
TGCCTCCCACCTTCGACATACGTCCAAATACTGGCCCGGCAGCCGCCCTC
CTCCTCTTCCGCCACCACTACTACTAGACCACCATTCCGCGTCTACTATA
CAAGCGAGGTGGCTCCCTACACGCACAACCCCATCTGGCTTGTTCTAGAC
CTAGAACCTTTAGAGAACGACGACATGAATAACGGCGACGAGGGCGAGTA
CGAAGAATGGGAGCAGGAAGGGGGAGAGGAAGGCTCGATAGAACCCAGCC
TCTCCGGGGAAGAAATCTGCATCCGCGTCTTTCTTGCGACCCCGACCGAC
GACGACAATGTCGGAGAGATAAACCGGTCTTCCGATCTCATAACCACCAT
AACCACCAAACAACGAGGAAGGAGAAGGAGAGCCGCACCTCATCTTGGAC
GACTCCAACGTGGACACCATCCCTCCATCACCCCTTCTCCTCCCCTCGCC
ACCTTCCTCTTCCACCTCCCCCGCCTCTGGTGCCTACCCCCTACCGTCAA
ACTATCACAGTTGCACCTGCCTGCTTTTCCGGCTACGTGTTTGTTGGCCA
CGGGGGAGGGTGGGACAGGGCTGTTGGTGGAGGAAGGGGTGGGGGAAGCG
TTGGGGTTGGAATTGAATGGAGGAAGGAGAGGGGATGCACCGCATTTGCT
CGATGAGCAGTACGTGGAGGAGCTGGAAGAGTACCAGCGCCGTCCTCCCT
TCGCTTCTTTCTCCTCCTTGTCCAGTAAGACACCGAATGGGGCGATGCGC
AAGCTGACCTTGGCATCGCCTTCTTCCTCTTCGTCCTGCTCCTCCTCCCA
AAAACGAGAGGAGGAATCAATAACAAATTACCGTGCTGAACAAGCCAAAT
TACAAGCCATGCTTCAAATAAAGCGTCTGGAGCTCGCGAGAGAAGAAAGA
GCACTAGCAGAGGAAGAAGAGGGATTAATGGAGGAAGGCCGCGTGCTTCA
CGCCCTAATGAAACGTCACGCATCCCTAGTCATAGAAGCGGCCAAGATAG
AGAAAGAAACGATGGATGTGGAGGAAGTCTTAATTCAGAAAGAATTTGTG
GTGGCGTTACGGCAACGAAAGCTGGTAGAAGAGCTTCAGAGAATTTATCC
CATTGAACGCAGGAGTGGTGAGCAAGAATATCGCATTCGGGGATTGGAGT
TGCCTGCAGACACAGTGAACACGACGAGGGACGATGACCTCATCGCGTCT
GCATTGGGGTATGTGTGTCATGTGCTTGTGATGCTGTCCAAGTACTTAGA
GGTTCCATTACGGTATGCTCTTGAATGTCGGTCTTCCCGATCCCTCATCC
AGGATGCCACCGTTGCGTACGCGGTGTTCCCTCTGTATAAACGAGGGGTG
GAACGAGAGCGGTTCGAATGGGCGGTGTACTTATTGAAGAAAAATATTCA
GCAGCTCTTGTGCGCGCGAGGCGTGTCCCGGATGCTGCTCCCGGGGGAAA
GAGAAGCAAGTGGAGGGGGAGGAGGAGGAGGAGGAAGTGGCGGCTTGTTC
CGAGAGCCACCATACTGTTCGCATATTCTCCAAAATTTACAGGCACTTTT
CATTCACGAACTGGCTTCATCCTCCACAACCCTGTAAAGTATTGTAGATC
GCACGGGCACATTTTTAAATGGCTTGAGGAAACGAAATAAAAGGAAAACT
TAAAATGGGAAAAGAAGGAAAGCCAGCAACGAAC back to topCoding sequence (CDS) from alignment at chr18:352085..354668- >NO18G00970.1 ID=NO18G00970.1|Name=NO18G00970.1|organism=Nannochloropsis oceanica|type=CDS|length=1743bp|location=Sequence derived from alignment at chr18:352085..354668- (Nannochloropsis oceanica)
ATGGCCGGGGAAGGGGAGGAGGAAGACACTGCCGCTTCTCCCGCGGCGGT
CGACCAACGAGAATCAGGAAGCCTTTTGGCGCGCTTGCTCCGACAGCTCC
GCACCGTCTCCGTCCGCAATCTAGCCGTCAGCCATGACAACGACGATGGA
CGTCCTTGCCTCCCACCTTCGACATACGTCCAAATACTGGCCCGGCAGCC
GCCCTCCTCCTCTTCCGCCACCACTACTACTAGACCACCATTCCGCGTCT
ACTATACAAGCGAGGTGGCTCCCTACACGCACAACCCCATCTGGCTTGTT
CTAGACCTAGAACCTTTAGAGAACGACGACATGAATAACGGCGACGAGGG
CGAGTACGAAGAATGGGAGCAGGAAGGGGGAGAGGAAGGCTCGATAGAAC
CCAGCCTCTCCGGGGAAGAAATCTGCATCCGCGTCTTTCTTGCGACCCCG
ACCGACGACGACAATGTCGGAGAGATAAACCGGTCTTCCGATCTCATAAC
CACCATAACCACCAAACAACGAGGAAGGAGAAGGAGAGCCGCACCTCATC
TTGGACGACTCCAACGTGGACACCATCCCTCCATCACCCCTTCTCCTCCC
CTCGCCACCTTCCTCTTCCACCTCCCCCGCCTCTGGTGCCTACCCCCTAC
CGTCAAACTATCACAGTTGCACCTGCCTGCTTTTCCGGCTACGTGTTTGT
TGGCCACGGGGGAGGGTGGGACAGGGCTGTTGGTGGAGGAAGGGGTGGGG
GAAGCGTTGGGGTTGGAATTGAATGGAGGAAGGAGAGGGGATGCACCGCA
TTTGCTCGATGAGCAGTACGTGGAGGAGCTGGAAGAGTACCAGCGCCGTC
CTCCCTTCGCTTCTTTCTCCTCCTTGTCCAGTAAGACACCGAATGGGGCG
ATGCGCAAGCTGACCTTGGCATCGCCTTCTTCCTCTTCGTCCTGCTCCTC
CTCCCAAAAACGAGAGGAGGAATCAATAACAAATTACCGTGCTGAACAAG
CCAAATTACAAGCCATGCTTCAAATAAAGCGTCTGGAGCTCGCGAGAGAA
GAAAGAGCACTAGCAGAGGAAGAAGAGGGATTAATGGAGGAAGGCCGCGT
GCTTCACGCCCTAATGAAACGTCACGCATCCCTAGTCATAGAAGCGGCCA
AGATAGAGAAAGAAACGATGGATGTGGAGGAAGTCTTAATTCAGAAAGAA
TTTGTGGTGGCGTTACGGCAACGAAAGCTGGTAGAAGAGCTTCAGAGAAT
TTATCCCATTGAACGCAGGAGTGGTGAGCAAGAATATCGCATTCGGGGAT
TGGAGTTGCCTGCAGACACAGTGAACACGACGAGGGACGATGACCTCATC
GCGTCTGCATTGGGGTATGTGTGTCATGTGCTTGTGATGCTGTCCAAGTA
CTTAGAGGTTCCATTACGGTATGCTCTTGAATGTCGGTCTTCCCGATCCC
TCATCCAGGATGCCACCGTTGCGTACGCGGTGTTCCCTCTGTATAAACGA
GGGGTGGAACGAGAGCGGTTCGAATGGGCGGTGTACTTATTGAAGAAAAA
TATTCAGCAGCTCTTGTGCGCGCGAGGCGTGTCCCGGATGCTGCTCCCGG
GGGAAAGAGAAGCAAGTGGAGGGGGAGGAGGAGGAGGAGGAAGTGGCGGC
TTGTTCCGAGAGCCACCATACTGTTCGCATATTCTCCAAAATTTACAGGC
ACTTTTCATTCACGAACTGGCTTCATCCTCCACAACCCTGTAA back to top
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