NO18G00920.1, NO18G00920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00920.1
Unique NameNO18G00920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1459
Alignment locationchr18:337163..339454 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:337163..339454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G00920.1 vs.
Match: XP_005854904.1 (small subunit ribosomal protein S7e [Nannochloropsis gaditana CCMP526]; EKU21448.1 small subunit ribosomal protein S7e [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 342.4 bits (877), Expect = 9.000e-91
Identity = 172/192 (89.58%), Postives = 185/192 (96.35%), Query Frame = 0 
Query:    1 MATRKIVKPKGQEADDTDLKVASELFQLESNNPEWKADLKDLYITAAKEVDVGKTQAIVVFVPFKLLKVYHKIQQRLVRELEKKFSGSHVVLVAQRTILGKSYGRSTKTQGVRPRSRTLSAVQDAILEDIVYPTEIVGKRTRCKVDGTKTLKVFLDNKDQMNVDYKLETFKEVYKKLTNKEVEFTFFVKQTD 193
            MAT+KIVKP+GQE D+ D KVASEL  LE+NNPEWKADLKDLYITAAKEVDVGKTQAIVVFVP++LLK YHKIQQRLVRELEKKFSGSHVV++AQRTILGKSYGRSTKT+G RPRSRTL+AVQDAILED+VYPTEIVGKRTRCKVDGTKTLKVFLDNKDQMNVDYKL+TFKEVYKKLTNKEVEFTFFVKQT+
Sbjct:    1 MATKKIVKPRGQEPDEWDTKVASELMNLENNNPEWKADLKDLYITAAKEVDVGKTQAIVVFVPYRLLKAYHKIQQRLVRELEKKFSGSHVVVIAQRTILGKSYGRSTKTKGPRPRSRTLTAVQDAILEDLVYPTEIVGKRTRCKVDGTKTLKVFLDNKDQMNVDYKLDTFKEVYKKLTNKEVEFTFFVKQTE 192
The following BLAST results are available for this feature:
BLAST of NO18G00920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854904.19.000e-9189.58small subunit ribosomal protein S7e [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00920NO18G00920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00920.1NO18G00920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00920.1.cds1NO18G00920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00920.1.cds2NO18G00920.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00920.1.cds3NO18G00920.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00920.1.cds4NO18G00920.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00920.1 ID=NO18G00920.1|Name=NO18G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1459bp
ATTTCTTCTGCCTGCTCTCATGTGTTGGCCGTAACAGGAATGCAGACGTG
CACGCAAGGCGTGGCACATTTCGTGTTGTCAAACCCTTTCATCTATTCCT
TCCTCATATGTCAAGCTGTGAGTTTTCACAACGTAGGTGGATGGACAGGA
GAGGCTGCGAACTTGTGCCAAGCATCAGGCATCGCCAGTCTCGTGTGTGG
CTCCGCGTCTATTCCTCGTCTGTACAACCGCTGTCACGAAAATGGCAGGG
TTGGTCAAGACCGGTGCTTTGCTGGTGTATTATGGCATAGCATATGTCTA
GGAAACGGAAGGCTTGGAAGTCTGCATTTAGAGGGCCACGGAGCCACAAG
GAGAGAGGAAGAAGCAGCACACGCGATGATAAGTCTTCCTTCTCCTAGTT
GCCTCACCATACACCTCCATACCTACACATAGGCACAGTCATGGCGACCC
GAAAGATTGTCAAGCCCAAGGGCCAGGAGGCAGATGACACGGACCTCAAG
GTGGCTTCTGAGTTGTTCCAACTCGAGAGCAACAACCCTGAGTGGAAGGC
AGACTTGAAGGATCTTTACATTACGGCGGCCAAGGAGGTGGACGTGGGCA
AGACCCAAGCCATTGTCGTCTTCGTCCCCTTTAAGCTCCTTAAAGTGTAC
CACAAGATCCAACAACGCCTCGTCCGAGAGTTGGAGAAGAAGTTCAGTGG
TTCCCATGTGGTGCTGGTCGCGCAACGCACCATCCTGGGGAAGAGCTACG
GCCGCTCCACCAAGACCCAAGGCGTCCGCCCCCGCTCCCGTACCCTGAGC
GCGGTCCAAGACGCCATTTTGGAAGACATCGTATACCCTACCGAAATCGT
GGGCAAGCGTACACGGTGCAAGGTGGACGGCACCAAGACTCTGAAGGTGT
TTTTGGATAACAAGGACCAGATGAACGTTGACTACAAGCTAGAGACGTTC
AAGGAGGTGTACAAGAAGTTGACCAACAAGGAGGTAGAGTTCACGTTTTT
CGTCAAGCAAACAGATGTCTAAGCAGCCGCAGTAGGATCAACAGCAGCAG
AGCAGTAGGAGTGACAGCAGGGATAGATTGGACTTGTCGCCACTGCTGCT
AAGAGAGAGGGAGAAGGTGTTGCAGTTCCTGCTCGTGCTGCTCGTTCGCG
AGGATGGAGAAGGATGAAGAGAGCTGGTTCAGCGTGTCTGGATGAGATGC
GAGGACGAGGACGAGGACTAACACTCTCCGCTGAGAAAAAACCAATGCAA
AACCCCAAAAAAGTTAGATATACATGCCTGACATGCTGGTGTGGACGGAC
GTGAACGGCGAGAGGTGGAAGGGTTGAAGGGGGTACTTCTAGAAAGGGAG
GCAAACAGCCACCGATAAGACAAAGAAGAGAAGCACTTGCAACTGCGCCA
ACTCGAACATGTCGCTTCGAAACATACGATGAACACGAAAGCGAACAGGC
ATTAATACT
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protein sequence of NO18G00920.1

>NO18G00920.1-protein ID=NO18G00920.1-protein|Name=NO18G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MATRKIVKPKGQEADDTDLKVASELFQLESNNPEWKADLKDLYITAAKEV
DVGKTQAIVVFVPFKLLKVYHKIQQRLVRELEKKFSGSHVVLVAQRTILG
KSYGRSTKTQGVRPRSRTLSAVQDAILEDIVYPTEIVGKRTRCKVDGTKT
LKVFLDNKDQMNVDYKLETFKEVYKKLTNKEVEFTFFVKQTDV*
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mRNA from alignment at chr18:337163..339454-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00920.1 ID=NO18G00920.1|Name=NO18G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2292bp|location=Sequence derived from alignment at chr18:337163..339454- (Nannochloropsis oceanica)
ATTTCTTCTGCCTGCTCTCATGTGTTGGCCGTAACAGGAATGCAGACGTG
CACGCAAGGCGTGGCACATTTCGTGTTGTCAAACCCTTTCATCTATTCCT
TCCTCATATGTCAAGCTGTGAGTTTTCACAACGTAGGTGGATGGACAGGA
GAGGCTGCGAACTTGTGCCAAGCATCAGGCATCGCCAGTCTCGTGTGTGG
CTCCGCGTCTATTCCTCGTCTGTACAACCGCTGTCACGAAAATGGCAGGG
TTGGTCAAGACCGGTGCTTTGCTGGTGTATTATGGCATAGCATATGTCTA
GGAAACGGAAGGCTTGGAAGTCTGCATTTAGAGGGCCACGGAGCCACAAG
GAGAGAGGAAGAAGCAGCACACGCGATGATAAGTCTTCCTTCTCCTAGTT
GCCTCACCATACACCTCCATACCTACACATAGGCACAGTCATGGCGACCC
GAAAGATTGTCAAGCCCAAGGGCCAGGAGGCAGATGACACGGACCTCAAG
GTGGCTTCTGAGTTGTTCCAACTCGAGGTAGGGAGGGAATGAGGGAGGGA
GGAAGGGAGGGAGGGAGAAGTGGGGGGAGCCAGTAACTTGTGAAAGTAGG
CACATTTGCATTCCTAGAGATAGCGGCAGGCGTAAGAATCGTCTGGAAAG
AGAAAGTGGATCATAGTCGGTTTTGAGTCGTGGAAGTAGGAGATATGCTG
AAGCTAGAGCTGATGACGGGCGTTCTGCGTTGGGTCCAGCAGCAGCAGCA
GCAGCAGCAACAGCAGCAGGAAAGAGGAGAGAGCTGTACGCATGTATGCA
TGCATATTGCTGTGACGGCTTGGCATGGCGCTGTCGGAAGAGGAGTAGAA
GGCAGGGAAGGAGAGAGGGCCGGATTGTCATATGGCCTTATAAGTAGCTC
TAGTCGTTGAGGGATAGTACAGTGCGTCCACCATCCCCTCTCATCCCTTC
CTCGGTCCATGCTTGGACTCACACACTCCCCACCTCCCTTCTCTTTCTTC
CGAATAGAGCAACAACCCTGAGTGGAAGGCAGACTTGAAGGATCTTTACA
TTACGGCGGCCAAGGAGGTGGACGTGGGCAAGACCCAAGCCATTGTCGTC
TTCGTCCCCTTTAAGCTCCTTAAAGTGTACCACAAGATCCAACAACGCCT
CGTCCGAGAGTTGGAGAAGAAGTTCAGGTGCGCGCGGATCCCCCTCTCGC
TCCCTCCCTTCCGCCTTTCCTCCCTCCGTGCGCATGACGCATGCGATCCT
GATGTAGAGAGCACTCCTTGTCCCTCTCGACCAACCCGCACCCTCACATC
CATCATCTTTTTCTCTCTTCCCTCCCTCCCCAGTGGTTCCCATGTGGTGC
TGGTCGCGCAACGCACCATCCTGGGGAAGAGCTACGGCCGCTCCACCAAG
ACCCAAGGCGTCCGCCCCCGCTCCCGTACCCTGAGCGCGGTCCAAGACGC
CATTTTGGAAGACATCGTATACCCTACCGAAATCGTGGGCAAGCGTACAC
GGTGCAAGGTGGACGGCACCAAGACTCTGAAGGTGTTTTTGGATAACAAG
GACCAGGTACGTCCTACCCCTCCTTCCTTCCCTCCCTCCCTTCCCTCCTC
AACCCCCCGGGGACCAGCGCAGCTCGCGAAGCACGACGGAGTAAAGAAAG
ATGGAGGGGTGGAGTCAAAGATCGCTCTGGCTATATTATCATAAGTACAG
AAATCACGCCAACATATGGACTCACCCTCCCTCCCTCGCTCCCTCTCTCG
TAGATGAACGTTGACTACAAGCTAGAGACGTTCAAGGAGGTGTACAAGAA
GTTGACCAACAAGGAGGTAGAGTTCACGTTTTTCGTCAAGCAAACAGATG
TCTAAGCAGCCGCAGTAGGATCAACAGCAGCAGAGCAGTAGGAGTGACAG
CAGGGATAGATTGGACTTGTCGCCACTGCTGCTAAGAGAGAGGGAGAAGG
TGTTGCAGTTCCTGCTCGTGCTGCTCGTTCGCGAGGATGGAGAAGGATGA
AGAGAGCTGGTTCAGCGTGTCTGGATGAGATGCGAGGACGAGGACGAGGA
CTAACACTCTCCGCTGAGAAAAAACCAATGCAAAACCCCAAAAAAGTTAG
ATATACATGCCTGACATGCTGGTGTGGACGGACGTGAACGGCGAGAGGTG
GAAGGGTTGAAGGGGGTACTTCTAGAAAGGGAGGCAAACAGCCACCGATA
AGACAAAGAAGAGAAGCACTTGCAACTGCGCCAACTCGAACATGTCGCTT
CGAAACATACGATGAACACGAAAGCGAACAGGCATTAATACT
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Coding sequence (CDS) from alignment at chr18:337163..339454-

>NO18G00920.1 ID=NO18G00920.1|Name=NO18G00920.1|organism=Nannochloropsis oceanica|type=CDS|length=582bp|location=Sequence derived from alignment at chr18:337163..339454- (Nannochloropsis oceanica)
ATGGCGACCCGAAAGATTGTCAAGCCCAAGGGCCAGGAGGCAGATGACAC
GGACCTCAAGGTGGCTTCTGAGTTGTTCCAACTCGAGAGCAACAACCCTG
AGTGGAAGGCAGACTTGAAGGATCTTTACATTACGGCGGCCAAGGAGGTG
GACGTGGGCAAGACCCAAGCCATTGTCGTCTTCGTCCCCTTTAAGCTCCT
TAAAGTGTACCACAAGATCCAACAACGCCTCGTCCGAGAGTTGGAGAAGA
AGTTCAGTGGTTCCCATGTGGTGCTGGTCGCGCAACGCACCATCCTGGGG
AAGAGCTACGGCCGCTCCACCAAGACCCAAGGCGTCCGCCCCCGCTCCCG
TACCCTGAGCGCGGTCCAAGACGCCATTTTGGAAGACATCGTATACCCTA
CCGAAATCGTGGGCAAGCGTACACGGTGCAAGGTGGACGGCACCAAGACT
CTGAAGGTGTTTTTGGATAACAAGGACCAGATGAACGTTGACTACAAGCT
AGAGACGTTCAAGGAGGTGTACAAGAAGTTGACCAACAAGGAGGTAGAGT
TCACGTTTTTCGTCAAGCAAACAGATGTCTAA
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Synonyms
Publications