NO18G00600.1, NO18G00600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00600.1
Unique NameNO18G00600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length816
Alignment locationchr18:253240..254443 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:253240..254443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G00600.1 vs.
Match: GAX97262.1 (Hypothetical protein PINS_005105 [Pythium insidiosum])

HSP 1 Score: 149.1 bits (375), Expect = 2.000e-32
Identity = 95/275 (34.55%), Postives = 139/275 (50.55%), Query Frame = 0 
Query:    2 PSPLSRFVFLGAPGVGKGTFASIIAPRLNLRIITAGDLLRKEAQHNPSISSLLTQ----GFLVPDTVILPLIAKELEKGREGGKEGGYILDGYPRRLTQAQALDGLLEGRGLPPMQRVIHIVLADWVAIAKMLGRVGCPRCHQSFNTTHIVTDTYDMPALLPPSLPSSSSSSSPSSSSSSPSSFPSAFCP--GGVTLHECPAVTAAAAGRKGGREGGWTRRSDDTEEIVRRRLEIYREDVQPLLEFYEKEGKLRVFEVFKGVKDAQALERMMLAE 271
            PS L + +FLGAPG GKGT+AS IAP L +  I+ GDL+R E +HN  +   + +    G LVPD +IL ++A+ L   +E   + G+ILDG+PR LTQA+    ++E         V++I L  W+ + K+ GR  C  C   +N  +I    Y+MP LLP                          C   GGVTL + P                      D E++VR+RLE+Y ++  PL++FY  +G LR FEV +G+ D   L  ++ +E
Sbjct:   27 PSSL-KIMFLGAPGAGKGTYASRIAPLLQIPTISTGDLVRHEIKHNTELGRKIKEYNDRGALVPDEIILDMVAQRL---KEDDAKAGFILDGFPRTLTQAEEFAKVVE------FDLVVNIDLPQWILVEKISGRRVCKSCGTGYNVAYINHGEYNMPPLLPK---------------------VEGVCDGCGGVTLVQRPD---------------------DNEDVVRKRLEVYNDETAPLIDFYADKGSLRTFEVKRGLADLDKLVHLIQSE 249
The following BLAST results are available for this feature:
BLAST of NO18G00600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
GAX97262.12.000e-3234.55Hypothetical protein PINS_005105 [Pythium insidios... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00600NO18G00600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00600.1NO18G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00600.1.cds1NO18G00600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00600.1.cds2NO18G00600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00600.1.cds3NO18G00600.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00600.1 ID=NO18G00600.1|Name=NO18G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=816bp
ATGCCGTCGCCCTTGTCCCGTTTCGTATTCCTTGGTGCACCAGGCGTAGG
AAAAGGCACGTTTGCCAGCATCATCGCCCCACGCTTGAACCTTCGCATCA
TCACTGCCGGCGACCTCTTACGGAAAGAGGCCCAGCATAACCCATCCATC
TCCTCCCTTCTCACCCAAGGCTTTCTAGTCCCTGACACCGTTATCCTTCC
TCTTATTGCCAAGGAGCTGGAAAAAGGGAGGGAGGGAGGGAAAGAGGGAG
GGTACATCCTTGATGGTTACCCTCGTCGTCTAACACAGGCCCAGGCGTTG
GATGGTTTATTGGAAGGAAGGGGGCTGCCGCCCATGCAGCGCGTGATTCA
CATCGTGCTGGCTGATTGGGTGGCCATTGCCAAGATGTTGGGCCGCGTCG
GATGTCCTCGTTGCCATCAGAGCTTTAATACAACCCACATTGTCACCGAC
ACCTACGACATGCCCGCCCTACTCCCACCCTCCCTCCCTTCCTCCTCCTC
CTCCTCGTCCCCCTCCTCCTCCTCCTCGTCCCCCTCCTCATTTCCCTCCG
CATTCTGCCCTGGCGGCGTCACCTTGCACGAATGCCCTGCCGTTACTGCG
GCTGCTGCAGGGAGGAAAGGAGGGAGGGAAGGAGGGTGGACGAGAAGGAG
CGATGATACAGAGGAGATCGTGAGAAGGAGACTTGAAATCTATAGAGAGG
ATGTACAGCCATTGCTTGAGTTTTATGAAAAGGAGGGTAAATTAAGGGTG
TTCGAAGTCTTCAAGGGCGTAAAGGACGCGCAGGCCTTGGAGAGGATGAT
GCTAGCGGAGGAATAA
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protein sequence of NO18G00600.1

>NO18G00600.1-protein ID=NO18G00600.1-protein|Name=NO18G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MPSPLSRFVFLGAPGVGKGTFASIIAPRLNLRIITAGDLLRKEAQHNPSI
SSLLTQGFLVPDTVILPLIAKELEKGREGGKEGGYILDGYPRRLTQAQAL
DGLLEGRGLPPMQRVIHIVLADWVAIAKMLGRVGCPRCHQSFNTTHIVTD
TYDMPALLPPSLPSSSSSSSPSSSSSSPSSFPSAFCPGGVTLHECPAVTA
AAAGRKGGREGGWTRRSDDTEEIVRRRLEIYREDVQPLLEFYEKEGKLRV
FEVFKGVKDAQALERMMLAEE*
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mRNA from alignment at chr18:253240..254443-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00600.1 ID=NO18G00600.1|Name=NO18G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1204bp|location=Sequence derived from alignment at chr18:253240..254443- (Nannochloropsis oceanica)
ATGCCGTCGCCCTTGTCCCGTTTCGTATTCCTTGGTGCACCAGGCGTAGG
AAAAGGCACGTTTGCCAGCATCATCGCCCCACGCTTGGTACGTTTTGAGC
ATCCTTTTTGGCAATCCTGTCTTGAAACTTAAAACTTCTTCCTCCCTCAT
ACACTACATTCTCGACTTCCCCCCTCACCCCCTTCCTCCCTCTCACCCCT
CCCTCCTTCCCTCCCCTCCCACGGCAGAACCTTCGCATCATCACTGCCGG
CGACCTCTTACGGAAAGAGGCCCAGCATAACCCATCCATCTCCTCCCTTC
TCACCCAAGGCTTTCTAGTCCCTGACACCGTTATCCTTCCTCTTATTGCC
AAGGAGCTGGAAAAAGGGAGGGAGGGAGGGAAAGAGGGAGGGTACATCCT
TGATGGTTACCCTCGTCGTCTAACACAGGCCCAGGCGTTGGATGGTTTAT
TGGAAGGAAGGGGGCTGCCGCCCATGCAGCGCGTGATTCACATCGTGCTG
GCTGATTGGGTCAGTACTTACCCTCCCTCCCTCTGTCCCTCCGTCCCTCC
GTCCCTCCCTCCTCATCTCCTTGCCCTCCTCTCCCTTCCCTAGAGCACTC
CCATCCACCTCTTTTGGCAATAATAACTCCTCATTCAACTAACTGTAGTG
TCACCAGGCTGATCACCTCATCCTCCCGCCCCTCCCCTCCCCTCCCCTTT
CCTCCCCTCCCATCCCATCCCTCCCCTCCTCCCTCCCTTCCTTCCTTCCT
CCCCCAGGTGGCCATTGCCAAGATGTTGGGCCGCGTCGGATGTCCTCGTT
GCCATCAGAGCTTTAATACAACCCACATTGTCACCGACACCTACGACATG
CCCGCCCTACTCCCACCCTCCCTCCCTTCCTCCTCCTCCTCCTCGTCCCC
CTCCTCCTCCTCCTCGTCCCCCTCCTCATTTCCCTCCGCATTCTGCCCTG
GCGGCGTCACCTTGCACGAATGCCCTGCCGTTACTGCGGCTGCTGCAGGG
AGGAAAGGAGGGAGGGAAGGAGGGTGGACGAGAAGGAGCGATGATACAGA
GGAGATCGTGAGAAGGAGACTTGAAATCTATAGAGAGGATGTACAGCCAT
TGCTTGAGTTTTATGAAAAGGAGGGTAAATTAAGGGTGTTCGAAGTCTTC
AAGGGCGTAAAGGACGCGCAGGCCTTGGAGAGGATGATGCTAGCGGAGGA
ATAA
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Coding sequence (CDS) from alignment at chr18:253240..254443-

>NO18G00600.1 ID=NO18G00600.1|Name=NO18G00600.1|organism=Nannochloropsis oceanica|type=CDS|length=816bp|location=Sequence derived from alignment at chr18:253240..254443- (Nannochloropsis oceanica)
ATGCCGTCGCCCTTGTCCCGTTTCGTATTCCTTGGTGCACCAGGCGTAGG
AAAAGGCACGTTTGCCAGCATCATCGCCCCACGCTTGAACCTTCGCATCA
TCACTGCCGGCGACCTCTTACGGAAAGAGGCCCAGCATAACCCATCCATC
TCCTCCCTTCTCACCCAAGGCTTTCTAGTCCCTGACACCGTTATCCTTCC
TCTTATTGCCAAGGAGCTGGAAAAAGGGAGGGAGGGAGGGAAAGAGGGAG
GGTACATCCTTGATGGTTACCCTCGTCGTCTAACACAGGCCCAGGCGTTG
GATGGTTTATTGGAAGGAAGGGGGCTGCCGCCCATGCAGCGCGTGATTCA
CATCGTGCTGGCTGATTGGGTGGCCATTGCCAAGATGTTGGGCCGCGTCG
GATGTCCTCGTTGCCATCAGAGCTTTAATACAACCCACATTGTCACCGAC
ACCTACGACATGCCCGCCCTACTCCCACCCTCCCTCCCTTCCTCCTCCTC
CTCCTCGTCCCCCTCCTCCTCCTCCTCGTCCCCCTCCTCATTTCCCTCCG
CATTCTGCCCTGGCGGCGTCACCTTGCACGAATGCCCTGCCGTTACTGCG
GCTGCTGCAGGGAGGAAAGGAGGGAGGGAAGGAGGGTGGACGAGAAGGAG
CGATGATACAGAGGAGATCGTGAGAAGGAGACTTGAAATCTATAGAGAGG
ATGTACAGCCATTGCTTGAGTTTTATGAAAAGGAGGGTAAATTAAGGGTG
TTCGAAGTCTTCAAGGGCGTAAAGGACGCGCAGGCCTTGGAGAGGATGAT
GCTAGCGGAGGAATAA
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Synonyms
Publications