NO18G00570.1, NO18G00570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00570.1
Unique NameNO18G00570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1937
Alignment locationchr18:235345..238630 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:235345..238630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G00570.1 vs.
Match: CBN79907.1 (Hypothetical leucine rich repeat protein [Ectocarpus siliculosus])

HSP 1 Score: 246.9 bits (629), Expect = 1.500e-61
Identity = 162/356 (45.51%), Postives = 218/356 (61.24%), Query Frame = 0 
Query:   59 SSSSGGAGLQPLLKAGRATGTLNLSCRQLKGVPTEVY----APSLAEDEKFWECRGLTKLDLSHNEIEALPPDLALLGATLRVLLLRQNLLSSLPPSLPSLENLLTLDLSGNRIKELDPSSF-AFPLLKDLSLSNNRISSLPPSLGPSLPSLQTLHLSNNLLRSFPPSLGTLQKLTTLTATGNALEVVSPSLLALPSLRLLDLRKNKITETPPGRPLDLSLLPSLVLLDLRENKLKFTPVLHRHSQLSQLYLGNSRLASLPPALAPALAPSLTELDVQGNLLEGLPLEIGMCIHLKILDARNNSLRETPFVLGYMESLTRVALEGNVLRTLRRALLSGPTSELKAFLRTRGDKPEW 410
            +++   A LQ LLK  R++G+LNL+ + L+ VP +V+        A+ EKFWE   L +LDLS N+I  LP  ++ L + L  L LR+N LSS+PP L SLE+L  LDL+GN I+EL      A   LK L LS NR+S LP S+G SL  L+TL LS+N +RS P S+  L++L TLT + N L  +  S+  L S++LLD  +N I   P      L+ L +L  LDLRENKL   P L    +L+Q++LG + L SL  A    ++  LTEL VQ N +  LP E+G    LK LD  NN L E P  LGY+  L R+A++GN LRT+RR+LLSG  S LK +LRTRG  P++
Sbjct:   60 AAAPSAASLQQLLKQARSSGSLNLTSKGLEEVPGQVFNLLDGVDAADGEKFWEACELQRLDLSFNQITELPAAVSNL-SVLVSLKLRKNRLSSVPPELFSLESLSLLDLTGNAIRELPEEGLGAAVALKGLLLSGNRLSRLPSSVG-SLHGLETLELSDNTIRSLPESIDGLKRLATLTVSNNGLASLPESVGGLRSVKLLDFSRNGIETVPKN---GLARLGALTSLDLRENKLTEVPPLPEGGRLAQVFLGFNLLTSLDGAALLGVSAGLTELHVQSNRIGQLPEEVGSLARLKTLDVSNNDLGELPAALGYLPHLHRLAVDGNPLRTIRRSLLSGGASSLKKYLRTRGPCPDY 410
The following BLAST results are available for this feature:
BLAST of NO18G00570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN79907.11.500e-6145.51Hypothetical leucine rich repeat protein [Ectocarp... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00570NO18G00570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00570.1NO18G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00570.1.cds1NO18G00570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00570.1.cds2NO18G00570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00570.1.cds3NO18G00570.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00570.1.cds4NO18G00570.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00570.1.cds5NO18G00570.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00570.1.cds6NO18G00570.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00570.1.cds7NO18G00570.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00570.1.cds8NO18G00570.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00570.1.cds9NO18G00570.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00570.1.cds10NO18G00570.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00570.1 ID=NO18G00570.1|Name=NO18G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1937bp
ATGCCAGGAAGGCCGCCACCTTCTATTCGAGGACAAACTCTGAATACCTC
CTTCCAAAAGCAGCAACTGCAGCATCAGAATGGGGTGACCATCGAGGTTT
TGACTGGCCCTCCTCCCCTACGTCGAGGGGGCTTCCTTAAAGACGATAGC
GATACCAGCAGCAGCAGCAGTTGCAGCAGCAGCAGCGGTGGGGCAGGTCT
GCAGCCTCTTCTTAAAGCTGGGCGTGCGACAGGCACATTGAACTTGTCGT
GCCGTCAGCTCAAGGGCGTGCCGACTGAGGTTTACGCCCCCTCCCTCGCC
GAAGACGAGAAGTTCTGGGAGTGTCGTGGGCTCACGAAGTTGGATCTGAG
CCACAATGAGATTGAGGCCCTCCCTCCCGACCTGGCTCTCCTCGGGGCCA
CCCTCCGCGTCCTCCTCCTCCGCCAGAACCTCCTGTCCTCCCTCCCTCCC
TCCCTCCCCTCCCTGGAAAACCTCCTCACTCTCGACCTGTCAGGCAACAG
GATCAAGGAGCTCGACCCGAGCTCGTTCGCCTTCCCCCTCCTCAAGGACC
TCAGCCTCTCCAACAACAGAATTTCCTCCCTCCCTCCCTCCCTCGGCCCC
TCCCTCCCTTCCTTGCAGACCCTCCACCTCTCCAACAACCTCCTTCGCTC
CTTCCCTCCCTCCCTCGGTACCCTGCAAAAGCTCACCACTCTCACAGCCA
CGGGAAATGCCTTGGAAGTCGTCTCTCCTTCCCTCCTCGCCCTCCCTTCC
TTGCGACTGCTCGACCTGAGGAAAAACAAAATCACCGAAACCCCACCCGG
AAGGCCCCTCGACCTCTCCCTCCTTCCCTCCCTCGTCCTCCTGGACTTGC
GGGAGAACAAATTGAAATTCACTCCTGTCCTACACCGCCACAGCCAGCTC
TCTCAGCTCTACCTCGGCAACAGCCGCCTAGCCTCCCTCCCTCCCGCCCT
CGCTCCCGCCCTCGCTCCCTCCCTCACCGAATTGGACGTGCAGGGAAACT
TGCTGGAGGGGCTACCGCTGGAGATCGGCATGTGCATTCACCTTAAGATT
CTTGACGCCCGCAATAATTCCCTCCGAGAAACACCCTTTGTGTTGGGGTA
CATGGAAAGCTTGACACGAGTTGCCTTGGAAGGTAATGTGCTCCGCACCC
TCCGGCGAGCCCTCCTCTCAGGCCCTACCTCCGAGCTCAAAGCCTTTCTG
AGGACGCGGGGGGATAAACCCGAATGGATGGATGAGGAGGGAGGGAGGGA
CGGAAGGAGGAGGAGAGGGATGAGCGAGAATAGGAGTGTTAATGGTTGTA
ATGAGGGAGGAGCAGGATCAGGTAGAGGAGGAGGAGGAGGAGGAGGAGGG
ACAGGAGGAGGAGGAACGAGGCGTAGTCAGGGCGTCAAACCTCACCCCAC
TACTATAACTGCTACTACTGCTACTGCTACTACTAATACTACTTACACTA
ATGCTGTAGCTACAGCTGCTGGAGCTGCTCTTGCTCCCCTTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCCCAACA
AAGCCCCCGCCTGACCCCAACCCCTCTTTCCGCCCCTCCCTCCCTCCCGC
CCTCCCTCCATCCCTCCTCCCTCCTCGAGGAAATCTGTGCCCTGGAAACA
GCCCTGGACGAACCCTCTCTCACCACCTCCAAGAGAATGCTCTTGAAAAG
GGAGCTCTCGAGGAAGAGAGTGGAAGCGCGGGGTGGGGAGAAGTAAATAA
TCTGGCTAATGCCTTTCCTCCCTTCTTCCCTCCCTCCCTCCTTCCTTCCC
TTCTTCCCTCACCTGGCCCTGGGGCAGGGCCTGGTATTGTGGTGCAGGAT
AGGGCGATGCGCGTGTCCTGCACTGGCGCAGCTGTTATATAAAGTTTATG
TGTGTATATAGGATATATATGTGTATTTAAATATATA
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protein sequence of NO18G00570.1

>NO18G00570.1-protein ID=NO18G00570.1-protein|Name=NO18G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=582bp
MPGRPPPSIRGQTLNTSFQKQQLQHQNGVTIEVLTGPPPLRRGGFLKDDS
DTSSSSSCSSSSGGAGLQPLLKAGRATGTLNLSCRQLKGVPTEVYAPSLA
EDEKFWECRGLTKLDLSHNEIEALPPDLALLGATLRVLLLRQNLLSSLPP
SLPSLENLLTLDLSGNRIKELDPSSFAFPLLKDLSLSNNRISSLPPSLGP
SLPSLQTLHLSNNLLRSFPPSLGTLQKLTTLTATGNALEVVSPSLLALPS
LRLLDLRKNKITETPPGRPLDLSLLPSLVLLDLRENKLKFTPVLHRHSQL
SQLYLGNSRLASLPPALAPALAPSLTELDVQGNLLEGLPLEIGMCIHLKI
LDARNNSLRETPFVLGYMESLTRVALEGNVLRTLRRALLSGPTSELKAFL
RTRGDKPEWMDEEGGRDGRRRRGMSENRSVNGCNEGGAGSGRGGGGGGGG
TGGGGTRRSQGVKPHPTTITATTATATTNTTYTNAVATAAGAALAPLPPP
PPPPPPPPPPPPPPSQQSPRLTPTPLSAPPSLPPSLHPSSLLEEICALET
ALDEPSLTTSKRMLLKRELSRKRVEARGGEK*
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mRNA from alignment at chr18:235345..238630+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00570.1 ID=NO18G00570.1|Name=NO18G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=3286bp|location=Sequence derived from alignment at chr18:235345..238630+ (Nannochloropsis oceanica)
ATGCCAGGAAGGCCGCCACCTTCTATTCGAGGACAAACTCTGAATACCTC
CTTCCAAAAGCAGCAACTGCAGCATCAGAATGGGGTGACCATCGAGGTAT
GTACGTCCCCTCCCACCCTCCCTCCCACCCTCCCTCCTATCCTACCTATC
TTCCCACCGACAACCCTGGAAGCCTGCCTTAATTTGAGCCCCTGGGGAAA
GAGGGAACGATACACGTTCTTCCTCCATCCCGCTTAATTTTCGGCCCTTC
CCTTCCCCTCCTCCCTTTTCCGATCTCTTCCCTAGGTTTTGACTGGCCCT
CCTCCCCTACGTCGAGGGGGCTTCCTTAAAGACGATAGCGATACCAGCAG
CAGCAGCAGTTGCAGCAGCAGCAGCGGTGGGGCAGGTCTGCAGCCTCTTC
TTAAAGCTGGGCGTGCGACAGGCACATTGAACTTGTCGTGCCGTCAGCTC
AAGGGCGTGCCGACTGAGGTGGGGCATGGAGGGGACGAGGGAGGGAGGGA
GGGAGGGAGGGAGGACAAGTTCGGTGTTGAAAGGCAAGGAAGTAAACGAA
ATGGCGCAGAGGTGAGTCTGTGCATTGTCGCCGAGCACAATGGTGAATAT
ATACCATACTCCTCATCCCTCCTCCCTCGCTCCCTCCTCCCCTCCCTCCC
TAGGTTTACGCCCCCTCCCTCGCCGAAGACGAGAAGTTCTGGGAGTGTCG
TGGGCTCACGAAGTTGGATCTGAGCCACAATGAGATTGAGGTGGGCTGAA
GAAGGAGGGAGGGAGGGGGGAGGATGGATTCTGCGCGTATGATAGACACG
GGCCAAGAGGACGTCGAGCTGGGGAGAGAGGGAGGGAGGGAGGGAGGGAG
GAGGAGAAAGAGGATCTCTATGCACGCTTTACTTCCTCCTCAACACTGCC
CTTCCGTCCTTCCCTCCCTCCGTCAGGCCCTCCCTCCCGACCTGGCTCTC
CTCGGGGCCACCCTCCGCGTCCTCCTCCTCCGCCAGAACCTCCTGTCCTC
CCTCCCTCCCTCCCTCCCCTCCCTGGAAAACCTCCTCACTCTCGACCTGT
CAGGCAACAGGATCAAGGAGCTCGGTACGTGCTTCCCTCCCTCCCTTTCC
CGCGTCCCTCCCTTCCTCCCTCCCTCTTCCCCTTCCTCTGTCCAATGCCT
ATCGCCTCACTTTCATCCCTCCCTCCCTCCCTCCCTCTCTCCCTCTAGAC
CCGAGCTCGTTCGCCTTCCCCCTCCTCAAGGACCTCAGCCTCTCCAACAA
CAGAATTTCCTCCCTCCCTCCCTCCCTCGGCCCCTCCCTCCCTTCCTTGC
AGACCCTCCACCTCTCCAACAACCTCCTTCGCTCCTTCCCTCCCTCCCTC
GGTACCCTGCAAAAGCTCACCACTCTCACAGCCACGGGAAATGCCTTGGA
AGTCGTAAGCCTCTCCCTCCCTCCCTTCCTCCCTCCCTTCCTCCGTCCCT
TCCTCCCACCCCCCCGTCCATCAACCTCCACTCGAACCAACCCCTCTTCC
CCCCCTCCCTCCCCCCTTTCCTCCCCCTCGCAGGTCTCTCCTTCCCTCCT
CGCCCTCCCTTCCTTGCGACTGCTCGACCTGAGGAAAAACAAAATCACCG
AAACCCCACCCGGAAGGTATAGTACTCCTTCCCCACCTCTCTCCCTTCCT
CCCTCCCTTCCTCCCTCCCTCTCCCCTTGCCGTGGCTGATGAACCCGTTG
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCTTCCCTT
CCCCTAGGCCCCTCGACCTCTCCCTCCTTCCCTCCCTCGTCCTCCTGGAC
TTGCGGGAGAACAAATTGAAATTCACTCCTGTCCTACACCGCCACAGCCA
GCTCTCTCAGGTGCCCTCCCTCCCTCCCTTCCTCCCCCCCCTCTTGCTTT
GTGTTCCTCTTTAACCGAGTGGACTGCCAAATGGTTCGCTTCTCTCACTT
TCCCTCCCTCCCTCCCTCCCTCAGCTCTACCTCGGCAACAGCCGCCTAGC
CTCCCTCCCTCCCGCCCTCGCTCCCGCCCTCGCTCCCTCCCTCACCGAAT
TGGACGTGCAGGGAAACTTGCTGGAGGGGCTACCGCTGGAGGTGAGGGAG
GGAGGGAGGGCGGGAGGGAGGGCGGGGAGATCACATCCACGGAGAGACCT
GGGAATCATCCAATCGCCTTAGTCTTCCTCCCCTCCCTTCCATTCCTCCC
TCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCCCCCCTCCAGATCGGCATGTGCATTCACCTT
AAGATTCTTGACGCCCGCAATAATTCCCTCCGAGAAACACCCTTTGTGTT
GGGGTACATGGAAAGCTTGACACGAGGTCTGCCCTCCCTCCCTCCCTCCC
TCCCATCTTCCTTCCCATCGTTGACCACCGTCCCGCTCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCCAGTTGCCTTGGAAGGTAATGTGCTCCGCACCCT
CCGGCGAGCCCTCCTCTCAGGCCCTACCTCCGAGCTCAAAGCCTTTCTGA
GGACGCGGGGGGATAAACCCGAATGGATGGATGAGGAGGGAGGGAGGGAC
GGAAGGAGGAGGAGAGGGATGAGCGAGAATAGGAGTGTTAATGGTTGTAA
TGAGGGAGGAGCAGGATCAGGTAGAGGAGGAGGAGGAGGAGGAGGAGGGA
CAGGAGGAGGAGGAACGAGGCGTAGTCAGGGCGTCAAACCTCACCCCACT
ACTATAACTGCTACTACTGCTACTGCTACTACTAATACTACTTACACTAA
TGCTGTAGCTACAGCTGCTGGAGCTGCTCTTGCTCCCCTTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCCCAACAA
AGCCCCCGCCTGACCCCAACCCCTCTTTCCGCCCCTCCCTCCCTCCCGCC
CTCCCTCCATCCCTCCTCCCTCCTCGAGGAAATCTGTGCCCTGGAAACAG
CCCTGGACGAACCCTCTCTCACCACCTCCAAGAGAATGCTCTTGAAAAGG
GAGCTCTCGAGGAAGAGAGTGGAAGCGCGGGGTGGGGAGAAGTAAATAAT
CTGGCTAATGCCTTTCCTCCCTTCTTCCCTCCCTCCCTCCTTCCTTCCCT
TCTTCCCTCACCTGGCCCTGGGGCAGGGCCTGGTATTGTGGTGCAGGATA
GGGCGATGCGCGTGTCCTGCACTGGCGCAGCTGTTATATAAAGTTTATGT
GTGTATATAGGATATATATGTGTATTTAAATATATA
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Coding sequence (CDS) from alignment at chr18:235345..238630+

>NO18G00570.1 ID=NO18G00570.1|Name=NO18G00570.1|organism=Nannochloropsis oceanica|type=CDS|length=1746bp|location=Sequence derived from alignment at chr18:235345..238630+ (Nannochloropsis oceanica)
ATGCCAGGAAGGCCGCCACCTTCTATTCGAGGACAAACTCTGAATACCTC
CTTCCAAAAGCAGCAACTGCAGCATCAGAATGGGGTGACCATCGAGGTTT
TGACTGGCCCTCCTCCCCTACGTCGAGGGGGCTTCCTTAAAGACGATAGC
GATACCAGCAGCAGCAGCAGTTGCAGCAGCAGCAGCGGTGGGGCAGGTCT
GCAGCCTCTTCTTAAAGCTGGGCGTGCGACAGGCACATTGAACTTGTCGT
GCCGTCAGCTCAAGGGCGTGCCGACTGAGGTTTACGCCCCCTCCCTCGCC
GAAGACGAGAAGTTCTGGGAGTGTCGTGGGCTCACGAAGTTGGATCTGAG
CCACAATGAGATTGAGGCCCTCCCTCCCGACCTGGCTCTCCTCGGGGCCA
CCCTCCGCGTCCTCCTCCTCCGCCAGAACCTCCTGTCCTCCCTCCCTCCC
TCCCTCCCCTCCCTGGAAAACCTCCTCACTCTCGACCTGTCAGGCAACAG
GATCAAGGAGCTCGACCCGAGCTCGTTCGCCTTCCCCCTCCTCAAGGACC
TCAGCCTCTCCAACAACAGAATTTCCTCCCTCCCTCCCTCCCTCGGCCCC
TCCCTCCCTTCCTTGCAGACCCTCCACCTCTCCAACAACCTCCTTCGCTC
CTTCCCTCCCTCCCTCGGTACCCTGCAAAAGCTCACCACTCTCACAGCCA
CGGGAAATGCCTTGGAAGTCGTCTCTCCTTCCCTCCTCGCCCTCCCTTCC
TTGCGACTGCTCGACCTGAGGAAAAACAAAATCACCGAAACCCCACCCGG
AAGGCCCCTCGACCTCTCCCTCCTTCCCTCCCTCGTCCTCCTGGACTTGC
GGGAGAACAAATTGAAATTCACTCCTGTCCTACACCGCCACAGCCAGCTC
TCTCAGCTCTACCTCGGCAACAGCCGCCTAGCCTCCCTCCCTCCCGCCCT
CGCTCCCGCCCTCGCTCCCTCCCTCACCGAATTGGACGTGCAGGGAAACT
TGCTGGAGGGGCTACCGCTGGAGATCGGCATGTGCATTCACCTTAAGATT
CTTGACGCCCGCAATAATTCCCTCCGAGAAACACCCTTTGTGTTGGGGTA
CATGGAAAGCTTGACACGAGTTGCCTTGGAAGGTAATGTGCTCCGCACCC
TCCGGCGAGCCCTCCTCTCAGGCCCTACCTCCGAGCTCAAAGCCTTTCTG
AGGACGCGGGGGGATAAACCCGAATGGATGGATGAGGAGGGAGGGAGGGA
CGGAAGGAGGAGGAGAGGGATGAGCGAGAATAGGAGTGTTAATGGTTGTA
ATGAGGGAGGAGCAGGATCAGGTAGAGGAGGAGGAGGAGGAGGAGGAGGG
ACAGGAGGAGGAGGAACGAGGCGTAGTCAGGGCGTCAAACCTCACCCCAC
TACTATAACTGCTACTACTGCTACTGCTACTACTAATACTACTTACACTA
ATGCTGTAGCTACAGCTGCTGGAGCTGCTCTTGCTCCCCTTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCCCAACA
AAGCCCCCGCCTGACCCCAACCCCTCTTTCCGCCCCTCCCTCCCTCCCGC
CCTCCCTCCATCCCTCCTCCCTCCTCGAGGAAATCTGTGCCCTGGAAACA
GCCCTGGACGAACCCTCTCTCACCACCTCCAAGAGAATGCTCTTGAAAAG
GGAGCTCTCGAGGAAGAGAGTGGAAGCGCGGGGTGGGGAGAAGTAA
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Synonyms
Publications