NO18G00540.2, NO18G00540.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00540.2
Unique NameNO18G00540.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1238
Alignment locationchr18:225423..227677 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:225423..227677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G00540.2 vs.
Match: XP_005852470.1 (hypothetical protein NGA_0727000 [Nannochloropsis gaditana CCMP526]; EKU23362.1 hypothetical protein NGA_0727000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 143.7 bits (361), Expect = 6.400e-31
Identity = 104/216 (48.15%), Postives = 120/216 (55.56%), Query Frame = 0 
Query:   30 LERRQVVERGATFKKRNFTLGGFALQTKKVYVNVK------------QDEGKLVLAYRQADDM-----------RDRGTE----------------------------IHAGDMKSIGANGAKSITIISKTGDVLLEIEAAEEEQRDLWLTALNEALLHNFKVASEEGVVLGQPRNFKERAEKEVRRKG----RK--EGGRAEWEGEGGKGGLLYT 189
            L R QVVE GATFKKRNFTLGGFALQTKKV+V VK             D+ +      QA D+           R+ G E                            + A  +     +GAKS+T++SKTGDVLLEIEAAEE QRDLWLTALNE LLHNFKV  E+GVV GQPRN KERAEKE R+K     RK  E  +A++  E   GGL YT
Sbjct:    8 LARIQVVESGATFKKRNFTLGGFALQTKKVFVRVKQEEGNCTLVYRQADDMRTAGTEIQAGDIKSIDANGQEGEREGGREGGREGGRGAKGAGEQAHVLAWPFQWLDCVRAPSLLVCAYSGAKSMTVLSKTGDVLLEIEAAEEAQRDLWLTALNEVLLHNFKVMGEDGVVRGQPRNMKERAEKERRQKDIELKRKSTEAKKAKFMKEA--GGLKYT 221
The following BLAST results are available for this feature:
BLAST of NO18G00540.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
100200300400500600700800900100011001200SequenceXP_005852470.1
Match NameE-valueIdentityDescription
XP_005852470.16.400e-3148.15hypothetical protein NGA_0727000 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00540NO18G00540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00540.2NO18G00540.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00540.2.cds1NO18G00540.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00540.2.cds2NO18G00540.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00540.2.cds3NO18G00540.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00540.2.cds4NO18G00540.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00540.2.cds5NO18G00540.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00540.2.cds6NO18G00540.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00540.2 ID=NO18G00540.2|Name=NO18G00540.2|organism=Nannochloropsis oceanica|type=mRNA|length=1238bp
ATCACAGGGCCACTCGAGGGGTAGGAAAAGCGTGCCAACAGACAAAGCCT
ATCCAATTCACAGGAGAAACCAAAGGCAAGCGCGCATAAGACATATAGCA
TACAGCCAGGAGGCCTCGACAAAACAGCGAGTGTGGGCCATGGCCGGGGC
GTCCTAAGCACCCTTCTATTCCTGCCTTCCTCCCCCTCCAGCATTCTCCG
CGTACAAGCCAATGGATTTCCTCGTCTATATCCTTGCCCGCCTCCAGGCC
TGTATGGAGTGCTTGAAGCCCTTCTTGCCTCAAGAAACCCAAGAGCGTCT
CGAACGTCGACAGGTCGTTGAACGCGGCGCCACCTTTAAGAAGCGAAATT
TTACCCTCGGAGGCTTTGCCCTACAGACCAAGAAAGTATATGTCAATGTA
AAACAAGACGAGGGAAAATTGGTTTTGGCGTACAGACAAGCCGACGACAT
GCGCGACCGAGGCACGGAGATTCACGCGGGTGACATGAAAAGCATCGGGG
CCAATGGCGCCAAAAGCATCACTATCATCTCTAAGACGGGAGATGTTCTG
CTGGAGATAGAGGCAGCAGAAGAAGAGCAGAGGGACTTGTGGCTCACAGC
GCTTAATGAGGCCCTCCTCCATAACTTCAAGGTGGCCAGTGAGGAGGGTG
TTGTCCTGGGACAGCCGCGCAACTTCAAGGAAAGAGCCGAGAAGGAGGTA
AGGAGGAAAGGAAGGAAGGAAGGGGGGAGGGCGGAATGGGAAGGTGAGGG
GGGTAAAGGAGGTTTACTCTACACAGAGAATGAGAGAGGGAGAAAGGAAA
AAAAGAAGACACATTCGAAGTAGGGTTTAAGTTGTGCCTCCCTTGTCGTC
TTTCCCTTCATTTCAAGCGAGAGAGGGGCAAAAATACGGCCAACAGCAGA
AGCCGAGCTCCATGAATCCCTCCCTCCCTTTATCCCTCATTCATTCCCAT
TTTGCCGGCGCGACAGCTCTACTTCCAAAGGCGGCATCAGGAGATTGAGC
TCAAGAAGAAAAGCACCGAGGCCAAGAAAGCCAAATTTATGCGGGAAGCG
GGAGGGTTGAAATACACCGCCCTACACATGGCCAATCGCGCGACGGAAGG
AGGAGGAGGGGGAGGTGCTGGGGGAGGAGGGGAGGTGGAAGAAGCAGTAT
GAGAGATGCAAGAGGGGGAAGAAGAGGAGGGACAAAGAAATAGACAGCGA
TGGTTTTAGGGTGGGATTGAGGAAACAAAGAATGTTGA
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protein sequence of NO18G00540.2

>NO18G00540.2-protein ID=NO18G00540.2-protein|Name=NO18G00540.2|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MDFLVYILARLQACMECLKPFLPQETQERLERRQVVERGATFKKRNFTLG
GFALQTKKVYVNVKQDEGKLVLAYRQADDMRDRGTEIHAGDMKSIGANGA
KSITIISKTGDVLLEIEAAEEEQRDLWLTALNEALLHNFKVASEEGVVLG
QPRNFKERAEKEVRRKGRKEGGRAEWEGEGGKGGLLYTENERGRKEKKKT
HSK*
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mRNA from alignment at chr18:225423..227677+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00540.2 ID=NO18G00540.2|Name=NO18G00540.2|organism=Nannochloropsis oceanica|type=mRNA|length=2255bp|location=Sequence derived from alignment at chr18:225423..227677+ (Nannochloropsis oceanica)
ATCACAGGGCCACTCGAGGGGTAGGAAAAGCGTGCCAACAGACAAAGCCT
ATCCAATTCACAGGAGAAACCAAAGGCAAGCGCGCATAAGACATATAGCA
TACAGCCAGGAGGCCTCGACAAAACAGCGAGTGTGGGCCATGGCCGGGGC
GTCCTAAGCACCCTTCTATTCCTGCCTTCCTCCCCCTCCAGCATTCTCCG
CGTACAAGCCAATGGATTTCCTCGTCTATATCCTTGCCCGCCTCCAGGTT
CGTCCTCCCCTCCTCCTCCTCCCTCCCACCCCTTTCTCTCCCTACCCTTT
GCACTCCCGCAGACCACCAAACCCATCCTGCAAAACATGGTTAAGCTTTC
TCTCCCCCACTTTTCGAAACCTTCCTCTCTAACAATTGTTTTTCGCCATC
TCTCCCCTCCTCCCGCTCCTTTCCATGCCCTCAAAGGCCTGTATGGAGTG
CTTGAAGCCCTTCTTGCCTCAAGAAACCCAAGAGCGTCTCGAACGTCGAC
AGGTGCGCAAGTGCCGTTGGAAATTGAACATAATTAACAAGACGCCGAAT
TGCCCTTCTCCAGCTTTCCCTTCTTCTCTCGTCCTCTCCCCCCACCTCTC
CATATCGGGACATTCCAGTTCACTTTCTTCTCCCTGTTTGCCCTCGCTCC
CTCCCTTCCTCCCTGCCTGCCATCCGTCCTCCCCTCTCAGGTCGTTGAAC
GCGGCGCCACCTTTAAGAAGCGAAATTTTACCCTCGGAGGCTTTGCCCTA
CAGACCAAGAAAGTATATGTCAATGTAAAACAAGACGAGGGAAAATTGGT
TTTGGCGTACAGGTAAGGGGTAGCTCACCCTCCCCCGCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCGGTACCTAAATTATCGAATTCATTGTCTCTCTTC
TTTTCATTGATTTCTTTCATTCCTTTAAATTTCTCCTTCGTTCCGTCAGC
TCACCGCTGCATTTTACCCTTGGCCGCTCCCATCCCTCCCTCACCTGCTC
CTCCTTCCCTCCCTTTCTCCCTCCCTCCCTCCAGACAAGCCGACGACATG
CGCGACCGAGGCACGGAGATTCACGCGGGTGACATGAAAAGCATCGGGGC
CAATGGTGAGGGAGGGGGGGAGGGAGAGAAGGAAGGAGGGAGGGGAGGAG
GGAAGGAAGGAGGAAGGGGACGGAGGGAAGGATGGAAGGAGGGAAAATGT
AAATGTCATTCGTCTAGCTGACCAAAAGTAGAAAACTAATGCCCTCTTTC
CCTCCCTCCTTCCCTTCCTTCCTTCCTTCCTTCCTCCCTTCCTCCCTTCC
TCTCTCCCTTCCTCCCTTCCTCCTTTCTCCTCTTCCTTCCTCCCTCCCTC
ACCCGCACAGGCGCCAAAAGCATCACTATCATCTCTAAGACGGGAGATGT
TCTGCTGGAGATAGAGGCAGCAGAAGAAGAGCAGAGGGACTTGTGGGTAA
GGGGGAAAGCGAGCGAGGGAGAGAGGGAGGGAGGGAGGGAGGAGGGGGCG
AACTGTACACCCCCCCCCCCCCCATTTACTACGCCTGCACTAACCCCTCC
TTTTCTTCCTCCTTCCTTTCCTCCCTCCCTCCCTCCCCCCCGGCCTGCCT
GTGCCACAGCTCACAGCGCTTAATGAGGCCCTCCTCCATAACTTCAAGGT
GGCCAGTGAGGAGGGTGTTGTCCTGGGACAGCCGCGCAACTTCAAGGAAA
GAGCCGAGAAGGAGGTAAGGAGGAAAGGAAGGAAGGAAGGGGGGAGGGCG
GAATGGGAAGGTGAGGGGGGTAAAGGAGGTTTACTCTACACAGAGAATGA
GAGAGGGAGAAAGGAAAAAAAGAAGACACATTCGAAGTAGGGTTTAAGTT
GTGCCTCCCTTGTCGTCTTTCCCTTCATTTCAAGCGAGAGAGGGGCAAAA
ATACGGCCAACAGCAGAAGCCGAGCTCCATGAATCCCTCCCTCCCTTTAT
CCCTCATTCATTCCCATTTTGCCGGCGCGACAGCTCTACTTCCAAAGGCG
GCATCAGGAGATTGAGCTCAAGAAGAAAAGCACCGAGGCCAAGAAAGCCA
AATTTATGCGGGAAGCGGGAGGGTTGAAATACACCGCCCTACACATGGCC
AATCGCGCGACGGAAGGAGGAGGAGGGGGAGGTGCTGGGGGAGGAGGGGA
GGTGGAAGAAGCAGTATGAGAGATGCAAGAGGGGGAAGAAGAGGAGGGAC
AAAGAAATAGACAGCGATGGTTTTAGGGTGGGATTGAGGAAACAAAGAAT
GTTGA
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Coding sequence (CDS) from alignment at chr18:225423..227677+

>NO18G00540.2 ID=NO18G00540.2|Name=NO18G00540.2|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at chr18:225423..227677+ (Nannochloropsis oceanica)
ATGGATTTCCTCGTCTATATCCTTGCCCGCCTCCAGGCCTGTATGGAGTG
CTTGAAGCCCTTCTTGCCTCAAGAAACCCAAGAGCGTCTCGAACGTCGAC
AGGTCGTTGAACGCGGCGCCACCTTTAAGAAGCGAAATTTTACCCTCGGA
GGCTTTGCCCTACAGACCAAGAAAGTATATGTCAATGTAAAACAAGACGA
GGGAAAATTGGTTTTGGCGTACAGACAAGCCGACGACATGCGCGACCGAG
GCACGGAGATTCACGCGGGTGACATGAAAAGCATCGGGGCCAATGGCGCC
AAAAGCATCACTATCATCTCTAAGACGGGAGATGTTCTGCTGGAGATAGA
GGCAGCAGAAGAAGAGCAGAGGGACTTGTGGCTCACAGCGCTTAATGAGG
CCCTCCTCCATAACTTCAAGGTGGCCAGTGAGGAGGGTGTTGTCCTGGGA
CAGCCGCGCAACTTCAAGGAAAGAGCCGAGAAGGAGGTAAGGAGGAAAGG
AAGGAAGGAAGGGGGGAGGGCGGAATGGGAAGGTGAGGGGGGTAAAGGAG
GTTTACTCTACACAGAGAATGAGAGAGGGAGAAAGGAAAAAAAGAAGACA
CATTCGAAGTAG
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Synonyms
Publications