NO18G00410.1, NO18G00410.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G00410.1
Unique Name	NO18G00410.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1594
Alignment location	chr18:173907..177287 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:173907..177287 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO18G00410.1 vs.
Match: CBJ48355.1 (Destroys superoxide radical to produce hydrogen peroxide [Ectocarpus siliculosus])

HSP 1 Score: 297.4 bits (760), Expect = 4.200e-77
Identity = 150/237 (63.29%), Postives = 172/237 (72.57%), Query Frame = 0

Query:    9 AKAVSTLARRIASTGLHEAQGQQAKTFMAAAAAAPKALTLPDLAYGYGELEPVISGEIMEIHHKKHHQAYITNFNVAMGKLVEAEAKGDVSAMIALQPALRFNGGGHLNHSIFWKNLAPPKAGGGVPPIGALAQAIESQFGSLAGLQDTMSAQSVAVQGSGWGWLGVDKKMKRLAIVALPNQDPLEATTGLVPLVGIDVWEHAYYLQYKNVRPDYVKAIWKVVNWKDAEARFAAAMS 246
            ++     ARR+ S G            ++++AAA     LPDL Y YGELEP ISGEIM+IHH KHHQAYI N N AM KL +AEAKGDV+A++ LQ A++FNGGGHLNHSIFWKNLAP   GGG    G LA  IE+Q+ S+  L + MSA SV VQGSGWGWLG DK  KRLAI    NQDPLEATTGLVPL+GIDVWEHAYYLQYKNVRPDYVK+I+KVVNW D + R  AA S
Sbjct:    4 SRVACNAARRVPSAG----------RMISSSAAARAPAVLPDLTYDYGELEPAISGEIMKIHHTKHHQAYINNLNAAMEKLADAEAKGDVTAILQLQAAIKFNGGGHLNHSIFWKNLAPVGKGGGEMVTGTLADMIEAQYHSMGELTEKMSAASVGVQGSGWGWLGYDKVNKRLAIATCANQDPLEATTGLVPLLGIDVWEHAYYLQYKNVRPDYVKSIFKVVNWADVQERLTAATS 230

The following BLAST results are available for this feature:

BLAST of NO18G00410.1 vs.

BLAST of NO18G00410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBJ48355.1	4.200e-77	63.29	Destroys superoxide radical to produce hydrogen pe...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G00410	NO18G00410	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G00410.1	NO18G00410.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G00410.1.cds1	NO18G00410.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00410.1.cds2	NO18G00410.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00410.1.cds3	NO18G00410.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00410.1.cds4	NO18G00410.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00410.1.cds5	NO18G00410.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00410.1.cds6	NO18G00410.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00410.1.cds7	NO18G00410.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00410.1.cds8	NO18G00410.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00410.1.cds9	NO18G00410.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:173907..177287-
coding sequence from alignment at chr18:173907..177287-

mRNA sequence

>NO18G00410.1 ID=NO18G00410.1|Name=NO18G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1594bp
AAATGACCTAGCCTCAGAACCTGTCCAATTTTGGGAAGAAAGAAGTAGAA
ATGGAGGGAGGGAGGGAGAGAGGGAGGAAGGGGTTGGGGAGGGTTGGTCG
GGTGAATTAGAATGGGCGAGGTGTAAGCAGAGCGCTATTTCTCGTGGAAA
GCAAAGACCTCCATGAGCTACCAGCAGCCTCCATGGAATAAGCTCAACAT
CTTGCACACATCTAGCACGAGGTGGTGGTGGTGCACGCGATAAGCTATGC
TGCATCACATGGACGGGAGGGGGGTGGAGAAGGAGGACAGTGAATCTCAT
GTGTCGCGTCGACCGCCTCGAAATGGCTGGGCTGGTCGATGGAGGATGAG
GAAATAAAGGGAAGCGATATTTGGAAACAAAGGCGAACGTAGTTTGCAAA
TGTCCAAGCTTCTATTTTCTTGAGCGTGTGGCATTGAAAGGGTCGGACAC
ACGCGCAGTTCGCGCTCGCATGCACTACGCCTCGTACTTGTTCCTCTTCC
TCGGCGACTGCTTGCTGGAACCGAAACAGAGAAGCGCCTTGCAAAGACAT
CAAGTCCTCAACTGTCAGCTCAAATACGACAGAGTACAGGAAAGAGTAGT
AGTACATATGGTATGGTGTGCGTGCGATGGGGGCAATAAAACACGAGAGG
ACGGTGAGGGCAGGCCAGTCAATGTCAACGGGTCGTGTCTCTCATCTCCT
ACTGGCTCTTTCCGAGGAGTCCTGCGTCGGCCTTGCCCTGAAGAACACTT
CTCTCGTCCTCCTTTGCTCTAATTCCCTGCTCCAACCCTTTTGCACACAA
CCGATACAGACACCATGGCTTCTTCTACCACCGCCGCTGCAAAGGCGGTC
TCCACCCTTGCACGGCGCATCGCGAGCACCGGCCTCCACGAGGCCCAGGG
ACAGCAGGCCAAAACCTTCATGGCTGCGGCGGCTGCGGCGCCCAAGGCGC
TGACCCTGCCCGACCTGGCTTACGGCTACGGGGAGCTCGAGCCCGTCATT
TCCGGAGAAATCATGGAGATTCACCACAAGAAGCACCACCAGGCCTATAT
TACCAACTTTAATGTGGCCATGGGCAAGTTGGTCGAGGCCGAAGCCAAGG
GTGACGTCTCGGCGATGATCGCCCTGCAGCCGGCCCTCCGCTTCAACGGC
GGTGGCCATCTCAACCACTCCATCTTTTGGAAGAATTTGGCGCCGCCCAA
GGCAGGAGGCGGCGTCCCCCCTATCGGCGCCTTGGCACAGGCCATTGAGA
GTCAGTTCGGCTCCCTGGCCGGCCTGCAAGATACAATGTCCGCACAGAGT
GTGGCAGTCCAGGGCTCTGGATGGGGCTGGCTCGGGGTGGACAAGAAGAT
GAAGCGATTGGCCATCGTCGCTCTTCCCAACCAGGACCCTCTCGAAGCCA
CCACCGGCCTCGTCCCTCTCGTCGGGATTGACGTCTGGGAACACGCCTAC
TATTTGCAGTACAAGAACGTCCGCCCCGACTACGTGAAGGCCATCTGGAA
GGTGGTCAACTGGAAAGATGCCGAGGCCCGCTTTGCCGCTGCAATGTCGT
CTTAAGGAGAAGGATGAAGGGAGAGGACGAAGGGAGGTAGGCAT

protein sequence of NO18G00410.1

>NO18G00410.1-protein ID=NO18G00410.1-protein|Name=NO18G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MASSTTAAAKAVSTLARRIASTGLHEAQGQQAKTFMAAAAAAPKALTLPD
LAYGYGELEPVISGEIMEIHHKKHHQAYITNFNVAMGKLVEAEAKGDVSA
MIALQPALRFNGGGHLNHSIFWKNLAPPKAGGGVPPIGALAQAIESQFGS
LAGLQDTMSAQSVAVQGSGWGWLGVDKKMKRLAIVALPNQDPLEATTGLV
PLVGIDVWEHAYYLQYKNVRPDYVKAIWKVVNWKDAEARFAAAMSS*

mRNA from alignment at chr18:173907..177287-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G00410.1 ID=NO18G00410.1|Name=NO18G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=3381bp|location=Sequence derived from alignment at chr18:173907..177287- (Nannochloropsis oceanica)
AAATGACCTAGCCTCAGAACCTGTCCAATTTTGGGAAGAAAGAAGTAGAA
ATGGAGGGAGGGAGGGAGAGAGGGAGGAAGGGGTTGGGGAGGGTTGGTCG
GGTGAATTAGAATGGGCGAGGTGTAAGCAGAGCGCTATTTCTCGTGGAAA
GCAAAGACCTCCATGAGCTACCAGCAGCCTCCATGGAATAAGCTCAACAT
CTTGCACACATCTAGCACGAGGTGGTGGTGGTGCACGCGATAAGCTATGC
TGCATCACATGGACGGGAGGGGGGTGGAGAAGGAGGACAGTGAATCTCAT
GTGTCGCGTCGACCGCCTCGAAATGGCTGGGCTGGTCGATGGAGGATGAG
GAAATAAAGGGAAGCGATATTTGGAAACAAAGGCGAACGTAGTTTGCAAA
TGTCCAAGCTTCTATTTTCTTGAGCGTGTGGCATTGAAAGGGTCGGACAC
ACGCGCAGTTCGCGCTCGCATGCACTACGCCTCGTACTTGTTCCTCTTCC
TCGGCGACTGCTTGCTGGAACCGAAACAGAGAAGCGCCTTGCAAAGACAT
CAAGTCCTCAACTGTCAGCTCAAATACGACAGAGTACAGGAAAGAGTAGT
AGTACATATGGTATGGTGTGCGTGCGATGGGGGCAATAAAACACGAGAGG
ACGGTGAGGGCAGGCCAGTCAATGTCAACGGGTCGTGTCTCTCATCTCCT
ACTGGCTCTTTCCGAGGAGTCCTGCGTCGGCCTTGCCCTGAAGAACACTT
CTCTCGTCCTCCTTTGCTCTAATTCCCTGCTCCAACCCTTTTGCACACAA
CCGATACAGACACCATGGCTTCTTCTACCACCGCCGCTGCAAAGGCGGTC
TCCACCCTTGCACGGCGCATCGCGAGGTAATAAATAAAATGTGGAAGATG
GGGCAAGATGGAGGGGGGAGGCTAAGTGCTCTAGACGGCCTTTCACGAGC
ATACATGTATGAAACCTGCACGAGCCCCGGTGGCTCAGGTGCACAAGACT
TGGGCGTACCCAGCGCATGGGGGGACGATGAGATGCACAATACATTGTCG
GCCAGCTTCGGCCACGCGTCATTAAAGCTCTCCTAAGGGGTACACTCATG
AAAAACGAGTCATATCAAGGCTTGTCATGTCATGCCGTCTTGCGCACTTA
GGCCTTCCCTTCCTCCCCCTCTTCAAACAGCACCGGCCTCCACGAGGCCC
AGGGACAGCAGGCCAAAACCTTCATGGCTGCGGCGGCTGCGGCGGTAAGA
GTAGAGTGTGTAAGGGGATGGGCCACAGCACTCGTAGTCTCCCTCCCTCT
CCATCGCTCTTAAGTTCCGCCATCGTTCCTTGACTATACGGGCTTCCATG
GTCAGATGCATAAAGAAATATTATTCTCTCTTCGACTCCCTTCTACTCAC
CTCTCATTTTCCTTCCTCCCCTTCCTCCCTCCCCTCCTCGCCTCTGCCCA
GCCCAAGGCGCTGACCCTGCCCGACCTGGCTTACGGCTACGGGGAGCTCG
AGCCCGTCATTTCCGGAGGTACGTGCATGCAGAGCAAAGCAAAGCAAGAG
GAATGGAAGGAGGGGTAGAAGGAGGAGTCGAAGGAAGTACAGACAGAGGG
GTGAAAGAAAGTATAGACAGAGGGATAGAAGGAAGTACAGACAGAGGGAT
AGAAGGAAGTATAGACAGAGGGATAGAAGGAAGTATAGACAGAGGGATAG
AAGGAAGTATAGACAGAGGGATAGAAGGAAGTATACAGAGAGGATTAGGG
GTGGAAGGAAGTGTAGACAGAGTGCGGCGTCATGGCTTGATTCATTCGTT
CGAAGGTAATTTTGGTTCATGCTCTCCTCCTCTTTCCCTCCCTCCCTCCC
TCCTTCGCGGACAGAAATCATGGAGATTCACCACAAGAAGCACCACCAGG
CCTATATTACCAACTTTAATGTGGCCATGGGCAAGTTGGTCGAGGCCGAA
GCCAAGGGTGACGTCTCGGCGATGATCGCCCTGCAGCCGGTGGGTATCCC
TCCCTCCCTCCCTCCCTCCCTCCCCCCCTTCCTTCTCACCCCTCTCTCGC
GACATGCCTCCTCCCCGGCCGTGATGGCACGATTGATGCCTCCTTTCTGG
ACAACTCCTGTTCCTCCCTTTCTCTCTTCCTTTCTCTTCCCTCCATTTGC
TGCACGTGCCTCACTTCATTCCACCCACCCCTCTTTCCTTCCCTCCCTCA
CTCCCTCCCTCCCTCCCTCAGGCCCTCCGCTTCAACGGCGGTGGCCATCT
CAACCACTCCATCTTTTGGAAGAATTTGGCGCCGCCCAAGGCAGGAGGCG
GCGTCCCCCCTATCGGTGCGTCCCGCCCTATCCTCCTTCCTCCCTTCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCTCTCCCTCCCTTTT
TCTCCTTCATCCCCTCCCTCCCTCCTTCCCTCCCTCCGTAGGCGCCTTGG
CACAGGCCATTGAGAGTCAGTTCGGCTCCCTGGCCGGCCTGCAAGATACA
ATGTCCGCACAGAGTGTGGCAGTCCAGGGCTCTGGATGGGGCTGGCTCGG
GTAGGGAGGGAGGGAGGGAGGGAGGGACGAAGGGACGGGGGAAGGGAGGA
AGGGAGGGAGGAAGGGAAGCATGAGTGGTTCGGGAGAACGGAATTAGCCA
GACGCCTCGTCTTATGGTTCAGTTCACGGAGGGGAACGAGGGAGGGAGGG
AGGGAGAGTAGGGGGAGAGAGAGAGGGAGAGAGGAGAGCACAGCACCACA
CTCCTTTGCCCTTCACTCTGCCATGCCTCCCTCCCTCCCTCTTTCCTTCC
CTTCCTCCCTCCGTTCTTCCAGGGTGGACAAGAAGATGAAGCGATTGGCC
ATCGTCGCTCTTCCCAACCAGGACCCTCTCGAAGCCACCACCGGCCTCGT
CCCTCTCGTCGGGATTGACGTCTGGGAACACGGTACGTGCCCTCCCTCCT
TCCCTCCCTCCTTCCCTCCCTCCATTCCAATTATGACAAGCTGGGCAAAA
GGGCCGTGAGTATCACCTGTACGTGTTCCCTGTCGCTCATCCTCCGTCTC
CCCCCCCCTTTCCCCCCCTCCCTCCCTCCCTCCCTCCAGCCTACTATTTG
CAGTACAAGAACGTCCGCCCCGACTACGTGAAGGCCATCTGGAAGGTATC
AAGGCCAGCTTTTCAGTCTCTTCTCCTTCCCTGCCTCCCCCCTCCCTCCC
TTTCTTTCATGTCGCCTTTTCGACCGAAACGCCTCAACCACGCCCGTATC
TGTTCTAATCCTCCCTCCTTCCTTCCCTCCCTCCCAAGGTGGTCAACTGG
AAAGATGCCGAGGCCCGCTTTGCCGCTGCAATGTCGTCTTAAGGAGAAGG
ATGAAGGGAGAGGACGAAGGGAGGTAGGCAT

Coding sequence (CDS) from alignment at chr18:173907..177287-

>NO18G00410.1 ID=NO18G00410.1|Name=NO18G00410.1|organism=Nannochloropsis oceanica|type=CDS|length=741bp|location=Sequence derived from alignment at chr18:173907..177287- (Nannochloropsis oceanica)
ATGGCTTCTTCTACCACCGCCGCTGCAAAGGCGGTCTCCACCCTTGCACG
GCGCATCGCGAGCACCGGCCTCCACGAGGCCCAGGGACAGCAGGCCAAAA
CCTTCATGGCTGCGGCGGCTGCGGCGCCCAAGGCGCTGACCCTGCCCGAC
CTGGCTTACGGCTACGGGGAGCTCGAGCCCGTCATTTCCGGAGAAATCAT
GGAGATTCACCACAAGAAGCACCACCAGGCCTATATTACCAACTTTAATG
TGGCCATGGGCAAGTTGGTCGAGGCCGAAGCCAAGGGTGACGTCTCGGCG
ATGATCGCCCTGCAGCCGGCCCTCCGCTTCAACGGCGGTGGCCATCTCAA
CCACTCCATCTTTTGGAAGAATTTGGCGCCGCCCAAGGCAGGAGGCGGCG
TCCCCCCTATCGGCGCCTTGGCACAGGCCATTGAGAGTCAGTTCGGCTCC
CTGGCCGGCCTGCAAGATACAATGTCCGCACAGAGTGTGGCAGTCCAGGG
CTCTGGATGGGGCTGGCTCGGGGTGGACAAGAAGATGAAGCGATTGGCCA
TCGTCGCTCTTCCCAACCAGGACCCTCTCGAAGCCACCACCGGCCTCGTC
CCTCTCGTCGGGATTGACGTCTGGGAACACGCCTACTATTTGCAGTACAA
GAACGTCCGCCCCGACTACGTGAAGGCCATCTGGAAGGTGGTCAACTGGA
AAGATGCCGAGGCCCGCTTTGCCGCTGCAATGTCGTCTTAA

Synonyms

Publications