NO18G00370.1, NO18G00370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00370.1
Unique NameNO18G00370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1968
Alignment locationchr18:154181..157384 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:154181..157384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G00370.1 vs.
Match: EWM23239.1 (inorganic diphosphatase [Nannochloropsis gaditana])

HSP 1 Score: 228.8 bits (582), Expect = 2.500e-56
Identity = 138/219 (63.01%), Postives = 153/219 (69.86%), Query Frame = 0 
Query:   44 MLLLRRFVAS----PSCRRLKCG----------RSPSSFNVQAGKPRNFSSSSSSSSSSSSSSSSPRALGMAAAASTSAALLFIATQHDRQPAAAAAAASSGQPSSSKPA-HAQYRPVYDIEIEGKNFPTELPVFIEVSKGSRMKYEWDSAVGLLRLDRVLHSAVFYPFDYGFIPQTLCEDGDPLDVLVMGDSSLEPGCIVDVRVLGYMVMEDEKGKDE 248
            +LL RR VA+    P  RR              RS SS  + +    N     S SSSSSS+++ PR +   AA    AA  F+  Q + +P A AAA S   P +  P+ HAQY PVYDI IEGK FP E+PVFIEVSKGSRMKYEWDS VGLLRLDRVLHSAVFYPFDYGFIPQTLC+DGDPLDVLVMGDSSLEPGCIVDVRVLGYMVMEDEKGKDE
Sbjct:    2 LLLFRRGVAAASFFPPTRRTLLAPHTKAVGGLVRSASSSPLSSASRVNRLGRISLSSSSSSAAAQPRGVTATAALPGLAAFFFLLAQTEHEPTATAAAGSGSPPGNVSPSTHAQYAPVYDIPIEGKAFPGEVPVFIEVSKGSRMKYEWDSNVGLLRLDRVLHSAVFYPFDYGFIPQTLCDDGDPLDVLVMGDSSLEPGCIVDVRVLGYMVMEDEKGKDE 220
The following BLAST results are available for this feature:
BLAST of NO18G00370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
20040060080010001200140016001800SequenceEWM23239.1
Match NameE-valueIdentityDescription
EWM23239.12.500e-5663.01inorganic diphosphatase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00370NO18G00370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00370.1NO18G00370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00370.1.cds1NO18G00370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00370.1.cds2NO18G00370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00370.1.cds3NO18G00370.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00370.1.cds4NO18G00370.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00370.1.cds5NO18G00370.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00370.1.cds6NO18G00370.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00370.1.cds7NO18G00370.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00370.1 ID=NO18G00370.1|Name=NO18G00370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1968bp
GCTACAGTTCTTCAGCCTCTGTCTGACTCTCTCAAACACCATTTGCTTCG
ACTCGGAGCTCAGCGGCATCATGTTGTAAAACATGTTCGCTTTGTCAGGG
TTTGAGAGGGAGGGCTAGATGGAGACGCAATGCAATATTTATTGGAAGAC
GTGTAGAGGGGAGGGAGGAAGCACCCTTCTTGCCCGACCCACGAACTTCG
CGATTCTGAACCAGCGGAGCCGCTTCAGAGAGAATCCCTTGTACTTCCGA
CCCGTGAGATGGCTGAAATGCCCACGGCGTCCATATTTTACGATCCGACT
TGGTACTAATTCAGCGAGGCTGCCATCTCCCAGCACGGAGGCACGCCGCA
GGATTGCCACCGAGCCCTCCCCTATTTTTAGCACCAGCATCTATGCGTCT
ATACGCTCCAGTCACAAACCATGTCGCTCCTGTACTTACACAAACCACAG
GCAAAGAAGCAGACGGCAGTGACGTGGCCCTTACTAGACGCACTCGCACG
CATTATTTTTCAAAGAACAGAATGCTCCTCCTTCGTCGCTTCGTTGCCTC
TCCCTCCTGCCGCCGCCTGAAATGTGGTCGGTCCCCTTCTTCATTCAACG
TCCAGGCTGGAAAGCCCCGGAACTTCTCTTCCTCCTCGTCCTCCTCGTCC
TCCTCGTCCTCCTCGTCCTCCTCGCCTCGGGCCCTAGGCATGGCCGCAGC
CGCCTCGACTTCCGCGGCTCTACTGTTCATTGCCACGCAGCATGACAGAC
AACCTGCCGCCGCCGCCGCCGCCGCCAGTTCAGGACAGCCATCGTCGAGC
AAGCCCGCACACGCCCAGTATAGGCCTGTCTATGACATTGAAATCGAAGG
CAAGAATTTCCCCACAGAATTGCCCGTATTCATCGAAGTTTCGAAGGGAA
GTAGAATGAAGTACGAGTGGGACTCGGCAGTAGGCTTGCTTCGGCTCGAC
CGTGTGCTCCATTCAGCCGTCTTCTACCCTTTCGACTACGGCTTCATCCC
GCAGACGCTGTGTGAGGATGGAGATCCCCTTGACGTCCTGGTCATGGGCG
ACAGCTCCCTCGAGCCAGGCTGCATCGTGGACGTGCGAGTGCTGGGCTAC
ATGGTCATGGAGGACGAGAAGGGCAAAGACGAGAAGGTCTTGGCTGTGCT
CAAGAAGGATCCGCGGATGCAGGAGGTGAAGACACTTCGAGACGTCCCCG
AGCACATTCTCCGGGAGATCACCTGCTTCTTCGAGCAGTACAAAGTGCTG
GAGAAGGAAAAATGGGTCAAAGTCGGAGGCTGGCGAGGCACCCAAGACAC
GTACAGCTTAGTGGAGAAGACGCACGTGGCCTACAGAGAAGCCAAAAAGC
AGGAGACAGTCAAGGAGGGCGCCCCTTCGCTTTGAAGAGGGAGGGAGGGA
GGGAGAGAGGGAAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTGCC
AAGGCTGGGAAGCTCCTCTATTGCAAAGGAAGGAGGGGTGAGCAGACGGG
GAGGGAGAGAGAGAAAGAGGAGGGAAAGGAAGGAGGAATGGAGAGAAGGA
CAGAATGAAGGAGGAAGGGAGGGAGGGAGAGAGGTTCATGAAGTCCCGGC
AAGAAGGTGTAGTCTGACGTGGAAGCTTCCTCTCCACAAGAAAAATAATC
GAATCGAAGGAAGGAGGGAGGGAGGGAGGGGCCGAGGGAGAGTCATTTGT
GACGGATGTCTGTGTTTCATTTATTGTTTGGGGATCCAGCGACGGGATAG
TTGGGTGGTGAAGGAGTAGAAGGAGTGATATGGGGAGGGAGGGAGGGAGG
CAGGGAGGGAGGGAGGGAGGGTGGAAGGAAGGGAGGGAGGATCTCCACAT
TCACATGCTCTCGATCGGAGATGTTTCCCCCTATCCCTTTAAAGAACATC
ATTAAAATTAGTCATTTACTTATTTGCCTGCATTGGACAACCAAGAGAAA
TACTAGATGAGAAGGGCA
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protein sequence of NO18G00370.1

>NO18G00370.1-protein ID=NO18G00370.1-protein|Name=NO18G00370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MRLYAPVTNHVAPVLTQTTGKEADGSDVALTRRTRTHYFSKNRMLLLRRF
VASPSCRRLKCGRSPSSFNVQAGKPRNFSSSSSSSSSSSSSSSSPRALGM
AAAASTSAALLFIATQHDRQPAAAAAAASSGQPSSSKPAHAQYRPVYDIE
IEGKNFPTELPVFIEVSKGSRMKYEWDSAVGLLRLDRVLHSAVFYPFDYG
FIPQTLCEDGDPLDVLVMGDSSLEPGCIVDVRVLGYMVMEDEKGKDEKVL
AVLKKDPRMQEVKTLRDVPEHILREITCFFEQYKVLEKEKWVKVGGWRGT
QDTYSLVEKTHVAYREAKKQETVKEGAPSL*
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mRNA from alignment at chr18:154181..157384-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00370.1 ID=NO18G00370.1|Name=NO18G00370.1|organism=Nannochloropsis oceanica|type=mRNA|length=3204bp|location=Sequence derived from alignment at chr18:154181..157384- (Nannochloropsis oceanica)
GCTACAGTTCTTCAGCCTCTGTCTGACTCTCTCAAACACCATTTGCTTCG
ACTCGGAGCTCAGCGGCATCATGTTGTAAAACATGTTCGCTTTGTCAGGG
TTTGAGAGGGAGGGCTAGATGGAGACGCAATGCAATATTTATTGGAAGAC
GTGTAGAGGGGAGGGAGGAAGCACCCTTCTTGCCCGACCCACGAACTTCG
CGATTCTGAACCAGCGGAGCCGCTTCAGAGAGAATCCCTTGTACTTCCGA
CCCGTGAGATGGCTGAAATGCCCACGGCGTCCATATTTTACGATCCGACT
TGGTACTAATTCAGCGAGGCTGCCATCTCCCAGCACGGAGGCACGCCGCA
GGATTGCCACCGAGCCCTCCCCTATTTTTAGCACCAGCATCTATGCGTCT
ATACGCTCCAGTCACAAACCATGTCGCTCCTGTACTTACACAAACCACAG
GCAAAGAAGCAGACGGCAGTGACGTGGCCCTTACTAGACGCACTCGCACG
CATTATTTTTCAAAGAACAGAATGCTCCTCCTTCGTCGCTTCGTTGCCTC
TCCCTCCTGCCGCCGCCTGAAATGTGGTCGGTCCCCTTCTTCATTCAACG
TCCAGGCTGGAAAGCCCCGGAACTTCTCTTCCTCCTCGTCCTCCTCGTCC
TCCTCGTCCTCCTCGTCCTCCTCGCCTCGGGCCCTAGGCATGGCCGCAGC
CGCCTCGACTTCCGCGGCTCTACTGTTCATTGCCACGCAGCATGACAGAC
AACCTGCCGCCGCCGCCGCCGCCGCCAGTTCAGGACAGCCATCGTCGAGC
AAGCCCGCACACGCCCAGTATAGGCCTGTCTATGACATTGAAATCGAAGG
CAAGAATTTCCCCACAGAATTGCCCGTATTCATCGAAGTTTCGAAGGTAA
ATTAATGTCCCTCCCTTGGCTCTCTTCCCTCCTTCCCTTCTTCCCTGCCT
GCCTCCCGGCCTCTCTGATGATCCTGGGAGGTCACTCTACTAGTCTTTGA
CACGCTGGTATAAATGGGATGAGTGGGTCCATCCGAAACTCTGAAGTCGC
GCTTTTTACCCTCAAACCGAACAACTACCAACACTACTCCTCCCTTCCCG
CCTCCCTCCCTCCCTCCCTCCCTCCACTCCTCTATGTTAGGGAAGTAGAA
TGAAGTACGAGTGGGACTCGGCAGTAGGCTTGCTTCGGCTCGACCGTGTG
CTCCATTCAGCCGTCTTCTACCCTTTCGACTACGGTACGCGTCCCATCAC
TCTTCCCTCTCTTTTCTTCTACTCATGTTGACTTACCTCTCTCTGTCTGC
GCCTCCCTCCTACCCTCCCTCCCTCCCTCTCAGGCTTCATCCCGCAGACG
CTGTGTGAGGATGGAGATCCCCTTGACGTCCTGGTCATGGGCGACAGCTC
CCTCGAGCCAGGTACTGGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCC
TCCCTCCCCCCCTTTCTTCCTACTTTTACGCCCATTCCCTCCCTCCACTC
CTCCTTCAGGCTGCATCGTGGACGTGCGAGTGCTGGGCTACATGGTCATG
GAGGACGAGAAGGGCAAAGACGAGAAGGTAACTAGCTCCCTCCCTCCTTC
CCCCCCTCTCTCCTTCCTCCCGTCCCTCCTTGCTTCCCTCTCTTCACCTC
GTCATCACTCTCGCCGCGCCCGTCAAGCAGACGCCCATACGTCTCACCTC
ACCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCAGGTCTTGGCTGTGCTCAAGAAGGATCCGCGGATGCAGGAGGTGAAGA
CACTTCGAGACGTCCCCGAGCACATTCTCCGGGAGATCACCTGCTTCTTC
GAGCAGGTGCCGTGTTTTCCCCTCCTCCCTCCCTCCCTCCCTCCCTCCCT
CTCTTTCGCTCCCCTGTCCCCTTCGCCCTCCTTGTGCCCGTCCCTCCCTT
CCTCCCTCCCTCTCCTCCTCCCTCGCCCTCCCTCCTGCTTATTATGAACT
AATCGACCGCCCGCTGTCTCCTTTTCCCCTTCCTCCCTCCCTTTCCAGTA
CAAAGTGCTGGAGAAGGAAAAATGGGTCAAAGTCGGAGGCTGGCGAGGTA
GGCTCAAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAG
GGGAGTTAACTCACGCATGGATGCTTGAGTCCCTACCTGTCACCCGCCGA
GGCCCTTCCCATACTCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCACCCAAGACACGTACAG
CTTAGTGGAGAAGACGCACGTGGCCTACAGAGAAGCCAAAAAGCAGGAGA
CAGTCAAGGAGGGCGCCCCTTCGCTTTGAAGAGGGAGGGAGGGAGGGAGA
GAGGGAAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTGCCAAGGCT
GGGAAGCTCCTCTATTGCAAAGGAAGGAGGGGTGAGCAGACGGGGAGGGA
GAGAGAGAAAGAGGAGGGAAAGGAAGGAGGAATGGAGAGAAGGACAGAAT
GAAGGAGGAAGGGAGGGAGGGAGAGAGGTTCATGAAGTCCCGGCAAGAAG
GTGTAGTCTGACGTGGAAGCTTCCTCTCCACAAGAAAAATAATCGAATCG
AAGGAAGGAGGGAGGGAGGGAGGGGCCGAGGGAGAGTCATTTGTGACGGA
TGTCTGTGTTTCATTTATTGTTTGGGGATCCAGCGACGGGATAGTTGGGT
GGTGAAGGAGTAGAAGGAGTGATATGGGGAGGGAGGGAGGGAGGCAGGGA
GGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGATACGGGAATCAAAGAATCGTCGAATTGACT
GGCGGCACGGACGGGATGCAGAGGGAGGGAAAGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGAAACGAGAGAGGGAGGGAGGGAGGTGTG
TGAGATGACCCTTTCCGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGTGGAAGGAAGGGAGGGAGGATCTCCACATTCACATGCTCTCGA
TCGGAGATGTTTCCCCCTATCCCTTTAAAGAACATCATTAAAATTAGTCA
TTTACTTATTTGCCTGCATTGGACAACCAAGAGAAATACTAGATGAGAAG
GGCA
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Coding sequence (CDS) from alignment at chr18:154181..157384-

>NO18G00370.1 ID=NO18G00370.1|Name=NO18G00370.1|organism=Nannochloropsis oceanica|type=CDS|length=993bp|location=Sequence derived from alignment at chr18:154181..157384- (Nannochloropsis oceanica)
ATGCGTCTATACGCTCCAGTCACAAACCATGTCGCTCCTGTACTTACACA
AACCACAGGCAAAGAAGCAGACGGCAGTGACGTGGCCCTTACTAGACGCA
CTCGCACGCATTATTTTTCAAAGAACAGAATGCTCCTCCTTCGTCGCTTC
GTTGCCTCTCCCTCCTGCCGCCGCCTGAAATGTGGTCGGTCCCCTTCTTC
ATTCAACGTCCAGGCTGGAAAGCCCCGGAACTTCTCTTCCTCCTCGTCCT
CCTCGTCCTCCTCGTCCTCCTCGTCCTCCTCGCCTCGGGCCCTAGGCATG
GCCGCAGCCGCCTCGACTTCCGCGGCTCTACTGTTCATTGCCACGCAGCA
TGACAGACAACCTGCCGCCGCCGCCGCCGCCGCCAGTTCAGGACAGCCAT
CGTCGAGCAAGCCCGCACACGCCCAGTATAGGCCTGTCTATGACATTGAA
ATCGAAGGCAAGAATTTCCCCACAGAATTGCCCGTATTCATCGAAGTTTC
GAAGGGAAGTAGAATGAAGTACGAGTGGGACTCGGCAGTAGGCTTGCTTC
GGCTCGACCGTGTGCTCCATTCAGCCGTCTTCTACCCTTTCGACTACGGC
TTCATCCCGCAGACGCTGTGTGAGGATGGAGATCCCCTTGACGTCCTGGT
CATGGGCGACAGCTCCCTCGAGCCAGGCTGCATCGTGGACGTGCGAGTGC
TGGGCTACATGGTCATGGAGGACGAGAAGGGCAAAGACGAGAAGGTCTTG
GCTGTGCTCAAGAAGGATCCGCGGATGCAGGAGGTGAAGACACTTCGAGA
CGTCCCCGAGCACATTCTCCGGGAGATCACCTGCTTCTTCGAGCAGTACA
AAGTGCTGGAGAAGGAAAAATGGGTCAAAGTCGGAGGCTGGCGAGGCACC
CAAGACACGTACAGCTTAGTGGAGAAGACGCACGTGGCCTACAGAGAAGC
CAAAAAGCAGGAGACAGTCAAGGAGGGCGCCCCTTCGCTTTGA
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Synonyms
Publications