NO18G00370.1, NO18G00370.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G00370.1
Unique Name	NO18G00370.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1968
Alignment location	chr18:154181..157384 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:154181..157384 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO18G00370.1 vs.
Match: EWM23239.1 (inorganic diphosphatase [Nannochloropsis gaditana])

HSP 1 Score: 228.8 bits (582), Expect = 2.500e-56
Identity = 138/219 (63.01%), Postives = 153/219 (69.86%), Query Frame = 0

Query:   44 MLLLRRFVAS----PSCRRLKCG----------RSPSSFNVQAGKPRNFSSSSSSSSSSSSSSSSPRALGMAAAASTSAALLFIATQHDRQPAAAAAAASSGQPSSSKPA-HAQYRPVYDIEIEGKNFPTELPVFIEVSKGSRMKYEWDSAVGLLRLDRVLHSAVFYPFDYGFIPQTLCEDGDPLDVLVMGDSSLEPGCIVDVRVLGYMVMEDEKGKDE 248
            +LL RR VA+    P  RR              RS SS  + +    N     S SSSSSS+++ PR +   AA    AA  F+  Q + +P A AAA S   P +  P+ HAQY PVYDI IEGK FP E+PVFIEVSKGSRMKYEWDS VGLLRLDRVLHSAVFYPFDYGFIPQTLC+DGDPLDVLVMGDSSLEPGCIVDVRVLGYMVMEDEKGKDE
Sbjct:    2 LLLFRRGVAAASFFPPTRRTLLAPHTKAVGGLVRSASSSPLSSASRVNRLGRISLSSSSSSAAAQPRGVTATAALPGLAAFFFLLAQTEHEPTATAAAGSGSPPGNVSPSTHAQYAPVYDIPIEGKAFPGEVPVFIEVSKGSRMKYEWDSNVGLLRLDRVLHSAVFYPFDYGFIPQTLCDDGDPLDVLVMGDSSLEPGCIVDVRVLGYMVMEDEKGKDE 220

The following BLAST results are available for this feature:

BLAST of NO18G00370.1 vs.

BLAST of NO18G00370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23239.1	2.500e-56	63.01	inorganic diphosphatase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G00370	NO18G00370	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G00370.1	NO18G00370.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G00370.1.cds1	NO18G00370.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00370.1.cds2	NO18G00370.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00370.1.cds3	NO18G00370.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00370.1.cds4	NO18G00370.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00370.1.cds5	NO18G00370.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00370.1.cds6	NO18G00370.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00370.1.cds7	NO18G00370.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:154181..157384-
coding sequence from alignment at chr18:154181..157384-

mRNA sequence

>NO18G00370.1 ID=NO18G00370.1|Name=NO18G00370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1968bp
GCTACAGTTCTTCAGCCTCTGTCTGACTCTCTCAAACACCATTTGCTTCG
ACTCGGAGCTCAGCGGCATCATGTTGTAAAACATGTTCGCTTTGTCAGGG
TTTGAGAGGGAGGGCTAGATGGAGACGCAATGCAATATTTATTGGAAGAC
GTGTAGAGGGGAGGGAGGAAGCACCCTTCTTGCCCGACCCACGAACTTCG
CGATTCTGAACCAGCGGAGCCGCTTCAGAGAGAATCCCTTGTACTTCCGA
CCCGTGAGATGGCTGAAATGCCCACGGCGTCCATATTTTACGATCCGACT
TGGTACTAATTCAGCGAGGCTGCCATCTCCCAGCACGGAGGCACGCCGCA
GGATTGCCACCGAGCCCTCCCCTATTTTTAGCACCAGCATCTATGCGTCT
ATACGCTCCAGTCACAAACCATGTCGCTCCTGTACTTACACAAACCACAG
GCAAAGAAGCAGACGGCAGTGACGTGGCCCTTACTAGACGCACTCGCACG
CATTATTTTTCAAAGAACAGAATGCTCCTCCTTCGTCGCTTCGTTGCCTC
TCCCTCCTGCCGCCGCCTGAAATGTGGTCGGTCCCCTTCTTCATTCAACG
TCCAGGCTGGAAAGCCCCGGAACTTCTCTTCCTCCTCGTCCTCCTCGTCC
TCCTCGTCCTCCTCGTCCTCCTCGCCTCGGGCCCTAGGCATGGCCGCAGC
CGCCTCGACTTCCGCGGCTCTACTGTTCATTGCCACGCAGCATGACAGAC
AACCTGCCGCCGCCGCCGCCGCCGCCAGTTCAGGACAGCCATCGTCGAGC
AAGCCCGCACACGCCCAGTATAGGCCTGTCTATGACATTGAAATCGAAGG
CAAGAATTTCCCCACAGAATTGCCCGTATTCATCGAAGTTTCGAAGGGAA
GTAGAATGAAGTACGAGTGGGACTCGGCAGTAGGCTTGCTTCGGCTCGAC
CGTGTGCTCCATTCAGCCGTCTTCTACCCTTTCGACTACGGCTTCATCCC
GCAGACGCTGTGTGAGGATGGAGATCCCCTTGACGTCCTGGTCATGGGCG
ACAGCTCCCTCGAGCCAGGCTGCATCGTGGACGTGCGAGTGCTGGGCTAC
ATGGTCATGGAGGACGAGAAGGGCAAAGACGAGAAGGTCTTGGCTGTGCT
CAAGAAGGATCCGCGGATGCAGGAGGTGAAGACACTTCGAGACGTCCCCG
AGCACATTCTCCGGGAGATCACCTGCTTCTTCGAGCAGTACAAAGTGCTG
GAGAAGGAAAAATGGGTCAAAGTCGGAGGCTGGCGAGGCACCCAAGACAC
GTACAGCTTAGTGGAGAAGACGCACGTGGCCTACAGAGAAGCCAAAAAGC
AGGAGACAGTCAAGGAGGGCGCCCCTTCGCTTTGAAGAGGGAGGGAGGGA
GGGAGAGAGGGAAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTGCC
AAGGCTGGGAAGCTCCTCTATTGCAAAGGAAGGAGGGGTGAGCAGACGGG
GAGGGAGAGAGAGAAAGAGGAGGGAAAGGAAGGAGGAATGGAGAGAAGGA
CAGAATGAAGGAGGAAGGGAGGGAGGGAGAGAGGTTCATGAAGTCCCGGC
AAGAAGGTGTAGTCTGACGTGGAAGCTTCCTCTCCACAAGAAAAATAATC
GAATCGAAGGAAGGAGGGAGGGAGGGAGGGGCCGAGGGAGAGTCATTTGT
GACGGATGTCTGTGTTTCATTTATTGTTTGGGGATCCAGCGACGGGATAG
TTGGGTGGTGAAGGAGTAGAAGGAGTGATATGGGGAGGGAGGGAGGGAGG
CAGGGAGGGAGGGAGGGAGGGTGGAAGGAAGGGAGGGAGGATCTCCACAT
TCACATGCTCTCGATCGGAGATGTTTCCCCCTATCCCTTTAAAGAACATC
ATTAAAATTAGTCATTTACTTATTTGCCTGCATTGGACAACCAAGAGAAA
TACTAGATGAGAAGGGCA

protein sequence of NO18G00370.1

>NO18G00370.1-protein ID=NO18G00370.1-protein|Name=NO18G00370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MRLYAPVTNHVAPVLTQTTGKEADGSDVALTRRTRTHYFSKNRMLLLRRF
VASPSCRRLKCGRSPSSFNVQAGKPRNFSSSSSSSSSSSSSSSSPRALGM
AAAASTSAALLFIATQHDRQPAAAAAAASSGQPSSSKPAHAQYRPVYDIE
IEGKNFPTELPVFIEVSKGSRMKYEWDSAVGLLRLDRVLHSAVFYPFDYG
FIPQTLCEDGDPLDVLVMGDSSLEPGCIVDVRVLGYMVMEDEKGKDEKVL
AVLKKDPRMQEVKTLRDVPEHILREITCFFEQYKVLEKEKWVKVGGWRGT
QDTYSLVEKTHVAYREAKKQETVKEGAPSL*

mRNA from alignment at chr18:154181..157384-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G00370.1 ID=NO18G00370.1|Name=NO18G00370.1|organism=Nannochloropsis oceanica|type=mRNA|length=3204bp|location=Sequence derived from alignment at chr18:154181..157384- (Nannochloropsis oceanica)
GCTACAGTTCTTCAGCCTCTGTCTGACTCTCTCAAACACCATTTGCTTCG
ACTCGGAGCTCAGCGGCATCATGTTGTAAAACATGTTCGCTTTGTCAGGG
TTTGAGAGGGAGGGCTAGATGGAGACGCAATGCAATATTTATTGGAAGAC
GTGTAGAGGGGAGGGAGGAAGCACCCTTCTTGCCCGACCCACGAACTTCG
CGATTCTGAACCAGCGGAGCCGCTTCAGAGAGAATCCCTTGTACTTCCGA
CCCGTGAGATGGCTGAAATGCCCACGGCGTCCATATTTTACGATCCGACT
TGGTACTAATTCAGCGAGGCTGCCATCTCCCAGCACGGAGGCACGCCGCA
GGATTGCCACCGAGCCCTCCCCTATTTTTAGCACCAGCATCTATGCGTCT
ATACGCTCCAGTCACAAACCATGTCGCTCCTGTACTTACACAAACCACAG
GCAAAGAAGCAGACGGCAGTGACGTGGCCCTTACTAGACGCACTCGCACG
CATTATTTTTCAAAGAACAGAATGCTCCTCCTTCGTCGCTTCGTTGCCTC
TCCCTCCTGCCGCCGCCTGAAATGTGGTCGGTCCCCTTCTTCATTCAACG
TCCAGGCTGGAAAGCCCCGGAACTTCTCTTCCTCCTCGTCCTCCTCGTCC
TCCTCGTCCTCCTCGTCCTCCTCGCCTCGGGCCCTAGGCATGGCCGCAGC
CGCCTCGACTTCCGCGGCTCTACTGTTCATTGCCACGCAGCATGACAGAC
AACCTGCCGCCGCCGCCGCCGCCGCCAGTTCAGGACAGCCATCGTCGAGC
AAGCCCGCACACGCCCAGTATAGGCCTGTCTATGACATTGAAATCGAAGG
CAAGAATTTCCCCACAGAATTGCCCGTATTCATCGAAGTTTCGAAGGTAA
ATTAATGTCCCTCCCTTGGCTCTCTTCCCTCCTTCCCTTCTTCCCTGCCT
GCCTCCCGGCCTCTCTGATGATCCTGGGAGGTCACTCTACTAGTCTTTGA
CACGCTGGTATAAATGGGATGAGTGGGTCCATCCGAAACTCTGAAGTCGC
GCTTTTTACCCTCAAACCGAACAACTACCAACACTACTCCTCCCTTCCCG
CCTCCCTCCCTCCCTCCCTCCCTCCACTCCTCTATGTTAGGGAAGTAGAA
TGAAGTACGAGTGGGACTCGGCAGTAGGCTTGCTTCGGCTCGACCGTGTG
CTCCATTCAGCCGTCTTCTACCCTTTCGACTACGGTACGCGTCCCATCAC
TCTTCCCTCTCTTTTCTTCTACTCATGTTGACTTACCTCTCTCTGTCTGC
GCCTCCCTCCTACCCTCCCTCCCTCCCTCTCAGGCTTCATCCCGCAGACG
CTGTGTGAGGATGGAGATCCCCTTGACGTCCTGGTCATGGGCGACAGCTC
CCTCGAGCCAGGTACTGGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCC
TCCCTCCCCCCCTTTCTTCCTACTTTTACGCCCATTCCCTCCCTCCACTC
CTCCTTCAGGCTGCATCGTGGACGTGCGAGTGCTGGGCTACATGGTCATG
GAGGACGAGAAGGGCAAAGACGAGAAGGTAACTAGCTCCCTCCCTCCTTC
CCCCCCTCTCTCCTTCCTCCCGTCCCTCCTTGCTTCCCTCTCTTCACCTC
GTCATCACTCTCGCCGCGCCCGTCAAGCAGACGCCCATACGTCTCACCTC
ACCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCAGGTCTTGGCTGTGCTCAAGAAGGATCCGCGGATGCAGGAGGTGAAGA
CACTTCGAGACGTCCCCGAGCACATTCTCCGGGAGATCACCTGCTTCTTC
GAGCAGGTGCCGTGTTTTCCCCTCCTCCCTCCCTCCCTCCCTCCCTCCCT
CTCTTTCGCTCCCCTGTCCCCTTCGCCCTCCTTGTGCCCGTCCCTCCCTT
CCTCCCTCCCTCTCCTCCTCCCTCGCCCTCCCTCCTGCTTATTATGAACT
AATCGACCGCCCGCTGTCTCCTTTTCCCCTTCCTCCCTCCCTTTCCAGTA
CAAAGTGCTGGAGAAGGAAAAATGGGTCAAAGTCGGAGGCTGGCGAGGTA
GGCTCAAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAG
GGGAGTTAACTCACGCATGGATGCTTGAGTCCCTACCTGTCACCCGCCGA
GGCCCTTCCCATACTCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCACCCAAGACACGTACAG
CTTAGTGGAGAAGACGCACGTGGCCTACAGAGAAGCCAAAAAGCAGGAGA
CAGTCAAGGAGGGCGCCCCTTCGCTTTGAAGAGGGAGGGAGGGAGGGAGA
GAGGGAAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTGCCAAGGCT
GGGAAGCTCCTCTATTGCAAAGGAAGGAGGGGTGAGCAGACGGGGAGGGA
GAGAGAGAAAGAGGAGGGAAAGGAAGGAGGAATGGAGAGAAGGACAGAAT
GAAGGAGGAAGGGAGGGAGGGAGAGAGGTTCATGAAGTCCCGGCAAGAAG
GTGTAGTCTGACGTGGAAGCTTCCTCTCCACAAGAAAAATAATCGAATCG
AAGGAAGGAGGGAGGGAGGGAGGGGCCGAGGGAGAGTCATTTGTGACGGA
TGTCTGTGTTTCATTTATTGTTTGGGGATCCAGCGACGGGATAGTTGGGT
GGTGAAGGAGTAGAAGGAGTGATATGGGGAGGGAGGGAGGGAGGCAGGGA
GGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGATACGGGAATCAAAGAATCGTCGAATTGACT
GGCGGCACGGACGGGATGCAGAGGGAGGGAAAGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGAAACGAGAGAGGGAGGGAGGGAGGTGTG
TGAGATGACCCTTTCCGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGTGGAAGGAAGGGAGGGAGGATCTCCACATTCACATGCTCTCGA
TCGGAGATGTTTCCCCCTATCCCTTTAAAGAACATCATTAAAATTAGTCA
TTTACTTATTTGCCTGCATTGGACAACCAAGAGAAATACTAGATGAGAAG
GGCA

Coding sequence (CDS) from alignment at chr18:154181..157384-

>NO18G00370.1 ID=NO18G00370.1|Name=NO18G00370.1|organism=Nannochloropsis oceanica|type=CDS|length=993bp|location=Sequence derived from alignment at chr18:154181..157384- (Nannochloropsis oceanica)
ATGCGTCTATACGCTCCAGTCACAAACCATGTCGCTCCTGTACTTACACA
AACCACAGGCAAAGAAGCAGACGGCAGTGACGTGGCCCTTACTAGACGCA
CTCGCACGCATTATTTTTCAAAGAACAGAATGCTCCTCCTTCGTCGCTTC
GTTGCCTCTCCCTCCTGCCGCCGCCTGAAATGTGGTCGGTCCCCTTCTTC
ATTCAACGTCCAGGCTGGAAAGCCCCGGAACTTCTCTTCCTCCTCGTCCT
CCTCGTCCTCCTCGTCCTCCTCGTCCTCCTCGCCTCGGGCCCTAGGCATG
GCCGCAGCCGCCTCGACTTCCGCGGCTCTACTGTTCATTGCCACGCAGCA
TGACAGACAACCTGCCGCCGCCGCCGCCGCCGCCAGTTCAGGACAGCCAT
CGTCGAGCAAGCCCGCACACGCCCAGTATAGGCCTGTCTATGACATTGAA
ATCGAAGGCAAGAATTTCCCCACAGAATTGCCCGTATTCATCGAAGTTTC
GAAGGGAAGTAGAATGAAGTACGAGTGGGACTCGGCAGTAGGCTTGCTTC
GGCTCGACCGTGTGCTCCATTCAGCCGTCTTCTACCCTTTCGACTACGGC
TTCATCCCGCAGACGCTGTGTGAGGATGGAGATCCCCTTGACGTCCTGGT
CATGGGCGACAGCTCCCTCGAGCCAGGCTGCATCGTGGACGTGCGAGTGC
TGGGCTACATGGTCATGGAGGACGAGAAGGGCAAAGACGAGAAGGTCTTG
GCTGTGCTCAAGAAGGATCCGCGGATGCAGGAGGTGAAGACACTTCGAGA
CGTCCCCGAGCACATTCTCCGGGAGATCACCTGCTTCTTCGAGCAGTACA
AAGTGCTGGAGAAGGAAAAATGGGTCAAAGTCGGAGGCTGGCGAGGCACC
CAAGACACGTACAGCTTAGTGGAGAAGACGCACGTGGCCTACAGAGAAGC
CAAAAAGCAGGAGACAGTCAAGGAGGGCGCCCCTTCGCTTTGA

Synonyms

Publications