NO18G00270.1, NO18G00270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00270.1
Unique NameNO18G00270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1029
Alignment locationchr18:96903..98507 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:96903..98507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO18G00270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00270NO18G00270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00270.1NO18G00270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00270.1.cds1NO18G00270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00270.1.cds2NO18G00270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00270.1.cds3NO18G00270.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00270.1.cds4NO18G00270.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00270.1 ID=NO18G00270.1|Name=NO18G00270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1029bp
ATGTTTCGCCAATCTGCCCTCCTCTTTGTGGCCCTCCTCTGTATGGCAGA
TGCCCAGTTCGAGGCCCTGACCGCGAACAAGAACAAGACGGGCAACAAAC
ACCCGAAAGGCGCTCACAACGATAAGACGAATCTGCGCAAGGTGACTGGC
TTCAATCTCTGCACCCAGGAGTACGATGCCTACATTGGCGGGACAGGTGT
CGCTGGTACGGGCGCATTTTCGTACCCCGTCTACCCTGGGGATTGTGCTG
AGGTAGACGACATGACCGAGGAAATCGGCTCCTTGAGCGCCACATGCTCA
AACAACCCGTACGAGGGCGTGACCTTCACCCTCACTCGCCAAGCAGTGGG
ACGTGCTGCACTTCTGGATGACATTAGATCGCCTGGCATCAACTACAACC
CAACTCCGCCTAATCAAGGAAATTTCGTCCAAGACTGGACTCCCCTTGAC
ATTGGTGAAACTACCACTACTGCACAGGTGCAGGCATCTGTGGATCAATT
CTGCGTGGATCAACAAGGAACCAAGTTTGCGCCTTTCAGTTCCAAGTGCT
CCGCCGAGCTCCGCCTTAGCGGCGATAACCGCAAGAATAAGCATCCAGGG
AGCATCTTATCTTTCGACTTCACGACCAACACGACTTTAGTCCCCGCTGG
CGGCACCTACACATCCATCACTCAATATGGAATGGGTGGTGTTTGGACGA
CTAAATCTGCAAGCAGTGGAGGATTTTCAGTATCTTTCTCATTTGTTGAC
GTTGTAGAGCTCTTCGCTTACCAGGTGATCGACACTGTCACGTGCGTTGC
CCGGTCTAACACGATTGACACGACGTTCAGTAAGATCTATGGTGGAAGCG
GCCGCTTTGAGAAGTACCCCGCCTCCAAGGTGGCGTCGGTGGAGCTGGAT
ACGATTCTGATTTTTTCTCCCGATGACGCAGCTAATCCTGAGAACACGTT
CGAGACTGAAAGCCAGGTATGGAACACCCAGCTGGAAGTTAATTACGCGA
AGAAGTACCTCGATTCCAGCATGCTTTAA
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protein sequence of NO18G00270.1

>NO18G00270.1-protein ID=NO18G00270.1-protein|Name=NO18G00270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MFRQSALLFVALLCMADAQFEALTANKNKTGNKHPKGAHNDKTNLRKVTG
FNLCTQEYDAYIGGTGVAGTGAFSYPVYPGDCAEVDDMTEEIGSLSATCS
NNPYEGVTFTLTRQAVGRAALLDDIRSPGINYNPTPPNQGNFVQDWTPLD
IGETTTTAQVQASVDQFCVDQQGTKFAPFSSKCSAELRLSGDNRKNKHPG
SILSFDFTTNTTLVPAGGTYTSITQYGMGGVWTTKSASSGGFSVSFSFVD
VVELFAYQVIDTVTCVARSNTIDTTFSKIYGGSGRFEKYPASKVASVELD
TILIFSPDDAANPENTFETESQVWNTQLEVNYAKKYLDSSML*
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mRNA from alignment at chr18:96903..98507+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00270.1 ID=NO18G00270.1|Name=NO18G00270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp|location=Sequence derived from alignment at chr18:96903..98507+ (Nannochloropsis oceanica)
ATGTTTCGCCAATCTGCCCTCCTCTTTGTGGCCCTCCTCTGTATGGCAGG
TAAGTAAGAGATGGATGACACTTTAAGGGAGTTGTTTGGAAAGACACGGG
AGGCCACATTGTGTCGTCCAGAGCTGCTGATTATTTCCTGTTTCTTTCGC
TTTATATTTATGGGACAGGCAGAAGCAGGTCGACAGACACTAAACTTGGC
CGGAATCATCCCCCACCCTATGAACTAGGACAATCCATCACAACCTCACC
AACCATGCATGCATTCATCCCAACAGATGCCCAGTTCGAGGCCCTGACCG
CGAACAAGAACAAGACGGGCAACAAACACCCGAAAGGCGCTCACAACGAT
AAGACGAATCTGCGCAAGGTGACTGGCTTCAATCTCTGCACCCAGGAGTA
CGATGCCTACATTGGCGGGACAGGTGTCGCTGGTACGGGCGCATTTTCGT
ACCCCGTCTACCCTGGGGATTGTGCTGAGGTAGGCAAGGGTAATCGAAGC
ATTTTTTCCTGTGAATTATTGTTATTCGGCCGGATAGAAAGGTGCCTGGC
CCTCAATGCTCACCTCAGTACATACCGTACAACTAACACTCACAACTCAC
AATCATCACTGGACAATACGCAATTATCAGGTAGACGACATGACCGAGGA
AATCGGCTCCTTGAGCGCCACATGCTCAAACAACCCGTACGAGGGCGTGA
CCTTCACCCTCACTCGCCAAGCAGTGGGACGTGCTGCACTTCTGGATGAC
ATTAGATCGCCTGGCATCAACTACAACCCAACTCCGCCTAATCAAGGAAA
TTTCGTCCAAGACTGGACTCCCCTTGACATTGGTGAAACTACCACTACTG
CACAGGTGCAGGCATCTGTGGATCAATTCTGCGTGGATCAACAAGGAACC
AAGTTTGCGCCTTTCAGTTCCAAGTGCTCCGCCGAGCTCCGCCTTAGCGG
CGATAACCGCAAGAATAAGCATCCAGGGAGCATCTTATCTTTCGACTTCA
CGACCAACACGACTTTAGTCCCCGGTACGTTGTTGTGGCGATTGATATGA
ATGCATGCATGTTGCGTGTTGGGGGAAGGGTACAGATTCGATGCATTTGA
TGTATGTGGAAAGGGTGTTACCTTAATTTTAATCCATTAACCCTACGTCT
TGCACCATAATCGGGATTCTCTTTAACCTCTCCTCCCTTCCTCCCTTATT
TTCCAACATTCTTTCCCTGAAGCTGGCGGCACCTACACATCCATCACTCA
ATATGGAATGGGTGGTGTTTGGACGACTAAATCTGCAAGCAGTGGAGGAT
TTTCAGTATCTTTCTCATTTGTTGACGTTGTAGAGCTCTTCGCTTACCAG
GTGATCGACACTGTCACGTGCGTTGCCCGGTCTAACACGATTGACACGAC
GTTCAGTAAGATCTATGGTGGAAGCGGCCGCTTTGAGAAGTACCCCGCCT
CCAAGGTGGCGTCGGTGGAGCTGGATACGATTCTGATTTTTTCTCCCGAT
GACGCAGCTAATCCTGAGAACACGTTCGAGACTGAAAGCCAGGTATGGAA
CACCCAGCTGGAAGTTAATTACGCGAAGAAGTACCTCGATTCCAGCATGC
TTTAA
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Coding sequence (CDS) from alignment at chr18:96903..98507+

>NO18G00270.1 ID=NO18G00270.1|Name=NO18G00270.1|organism=Nannochloropsis oceanica|type=CDS|length=1029bp|location=Sequence derived from alignment at chr18:96903..98507+ (Nannochloropsis oceanica)
ATGTTTCGCCAATCTGCCCTCCTCTTTGTGGCCCTCCTCTGTATGGCAGA
TGCCCAGTTCGAGGCCCTGACCGCGAACAAGAACAAGACGGGCAACAAAC
ACCCGAAAGGCGCTCACAACGATAAGACGAATCTGCGCAAGGTGACTGGC
TTCAATCTCTGCACCCAGGAGTACGATGCCTACATTGGCGGGACAGGTGT
CGCTGGTACGGGCGCATTTTCGTACCCCGTCTACCCTGGGGATTGTGCTG
AGGTAGACGACATGACCGAGGAAATCGGCTCCTTGAGCGCCACATGCTCA
AACAACCCGTACGAGGGCGTGACCTTCACCCTCACTCGCCAAGCAGTGGG
ACGTGCTGCACTTCTGGATGACATTAGATCGCCTGGCATCAACTACAACC
CAACTCCGCCTAATCAAGGAAATTTCGTCCAAGACTGGACTCCCCTTGAC
ATTGGTGAAACTACCACTACTGCACAGGTGCAGGCATCTGTGGATCAATT
CTGCGTGGATCAACAAGGAACCAAGTTTGCGCCTTTCAGTTCCAAGTGCT
CCGCCGAGCTCCGCCTTAGCGGCGATAACCGCAAGAATAAGCATCCAGGG
AGCATCTTATCTTTCGACTTCACGACCAACACGACTTTAGTCCCCGCTGG
CGGCACCTACACATCCATCACTCAATATGGAATGGGTGGTGTTTGGACGA
CTAAATCTGCAAGCAGTGGAGGATTTTCAGTATCTTTCTCATTTGTTGAC
GTTGTAGAGCTCTTCGCTTACCAGGTGATCGACACTGTCACGTGCGTTGC
CCGGTCTAACACGATTGACACGACGTTCAGTAAGATCTATGGTGGAAGCG
GCCGCTTTGAGAAGTACCCCGCCTCCAAGGTGGCGTCGGTGGAGCTGGAT
ACGATTCTGATTTTTTCTCCCGATGACGCAGCTAATCCTGAGAACACGTT
CGAGACTGAAAGCCAGGTATGGAACACCCAGCTGGAAGTTAATTACGCGA
AGAAGTACCTCGATTCCAGCATGCTTTAA
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Synonyms
Publications