NO18G00170.1, NO18G00170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00170.1
Unique NameNO18G00170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length582
Alignment locationchr18:68072..68653 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:68072..68653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO18G00170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00170NO18G00170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00170.1NO18G00170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00170.1.cds1NO18G00170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00170.1 ID=NO18G00170.1|Name=NO18G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=582bp
ATGGCAACACAAGATGTCGCTGCTGCCTCCGTCGCTATAGCCAACGCCTT
ACCGTGCCAATATGACGAATCTGCCGTCCCTGACGACCAAAATGAACAAG
CTGACGGGATGCAGCAAGCTGACGGAATGGAGGAGGAGGACGGAATAGAG
GAGGAGGACTCTGATGTGGTGGTGATGGAGCAGGAGGACAACGCTAGTGT
CAACAGCACCATAAACAGTAGCATCACCGCCAGCTCCAATAGCAGCGCGA
AATCCCGTCGACGGTTGTCCCTTTCTACTATCAATGGGAAGCGGAAAGCT
TTTGGCGTGGAGAGGAGGATCGACCTGTCGATCAATTACCTCTATACGTT
CGTCAACACCCGCGCCATGCCAGTTGAGCTTGCTGAAGAAGGCGGCTGGA
CACGACAGAAAGCACCCACTGCGAACAAGCATGTCAGCTTCGCCTGGATG
TTTTGCGCATACTTCCAGGAGGACATCCAGCGACGGTGGTACTGTCAGAC
GACGGAGACCTGCCGCGACAACAACATATTTATCTCAACGACCTCCCACT
TTCACGGCCAACGTCACGAGCCACTTGCGTGA
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protein sequence of NO18G00170.1

>NO18G00170.1-protein ID=NO18G00170.1-protein|Name=NO18G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MATQDVAAASVAIANALPCQYDESAVPDDQNEQADGMQQADGMEEEDGIE
EEDSDVVVMEQEDNASVNSTINSSITASSNSSAKSRRRLSLSTINGKRKA
FGVERRIDLSINYLYTFVNTRAMPVELAEEGGWTRQKAPTANKHVSFAWM
FCAYFQEDIQRRWYCQTTETCRDNNIFISTTSHFHGQRHEPLA*
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mRNA from alignment at chr18:68072..68653-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00170.1 ID=NO18G00170.1|Name=NO18G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=582bp|location=Sequence derived from alignment at chr18:68072..68653- (Nannochloropsis oceanica)
ATGGCAACACAAGATGTCGCTGCTGCCTCCGTCGCTATAGCCAACGCCTT
ACCGTGCCAATATGACGAATCTGCCGTCCCTGACGACCAAAATGAACAAG
CTGACGGGATGCAGCAAGCTGACGGAATGGAGGAGGAGGACGGAATAGAG
GAGGAGGACTCTGATGTGGTGGTGATGGAGCAGGAGGACAACGCTAGTGT
CAACAGCACCATAAACAGTAGCATCACCGCCAGCTCCAATAGCAGCGCGA
AATCCCGTCGACGGTTGTCCCTTTCTACTATCAATGGGAAGCGGAAAGCT
TTTGGCGTGGAGAGGAGGATCGACCTGTCGATCAATTACCTCTATACGTT
CGTCAACACCCGCGCCATGCCAGTTGAGCTTGCTGAAGAAGGCGGCTGGA
CACGACAGAAAGCACCCACTGCGAACAAGCATGTCAGCTTCGCCTGGATG
TTTTGCGCATACTTCCAGGAGGACATCCAGCGACGGTGGTACTGTCAGAC
GACGGAGACCTGCCGCGACAACAACATATTTATCTCAACGACCTCCCACT
TTCACGGCCAACGTCACGAGCCACTTGCGTGA
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Coding sequence (CDS) from alignment at chr18:68072..68653-

>NO18G00170.1 ID=NO18G00170.1|Name=NO18G00170.1|organism=Nannochloropsis oceanica|type=CDS|length=582bp|location=Sequence derived from alignment at chr18:68072..68653- (Nannochloropsis oceanica)
ATGGCAACACAAGATGTCGCTGCTGCCTCCGTCGCTATAGCCAACGCCTT
ACCGTGCCAATATGACGAATCTGCCGTCCCTGACGACCAAAATGAACAAG
CTGACGGGATGCAGCAAGCTGACGGAATGGAGGAGGAGGACGGAATAGAG
GAGGAGGACTCTGATGTGGTGGTGATGGAGCAGGAGGACAACGCTAGTGT
CAACAGCACCATAAACAGTAGCATCACCGCCAGCTCCAATAGCAGCGCGA
AATCCCGTCGACGGTTGTCCCTTTCTACTATCAATGGGAAGCGGAAAGCT
TTTGGCGTGGAGAGGAGGATCGACCTGTCGATCAATTACCTCTATACGTT
CGTCAACACCCGCGCCATGCCAGTTGAGCTTGCTGAAGAAGGCGGCTGGA
CACGACAGAAAGCACCCACTGCGAACAAGCATGTCAGCTTCGCCTGGATG
TTTTGCGCATACTTCCAGGAGGACATCCAGCGACGGTGGTACTGTCAGAC
GACGGAGACCTGCCGCGACAACAACATATTTATCTCAACGACCTCCCACT
TTCACGGCCAACGTCACGAGCCACTTGCGTGA
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Synonyms
Publications