NO18G00070.1, NO18G00070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00070.1
Unique NameNO18G00070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length474
Alignment locationchr18:41551..42133 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:41551..42133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO18G00070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00070NO18G00070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00070.1NO18G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00070.1.cds1NO18G00070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00070.1.cds2NO18G00070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00070.1 ID=NO18G00070.1|Name=NO18G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=474bp
ATGTGTGACACGCCCACACAAGCATCTCATGTGAAGGAGCTGATTAAAAA
TTTTGTGATTAGCAAATTCCAGGAGCTTTGGTGGGATCCCGCGTCACGGA
AAGACGATGCGACGGGGGAAGGGCAGTCATCGCGGCAGAAGACGTTGGCA
CAATTTCGACCCAAAAAACCTCGTTATGCTACGCTCTTTGGTGAAGATGA
AGAGGATGATTGTGAACGAGGAACGAGAGGGGGAAGTGTTCTACGCTCGG
TTGATTGGGCGGAGCACCAACTGAATGAGTACTTGGCGTGTTTTCAAAGT
CTTCTGGCGATGCCGGGGGGGGCAGCCGCGCTGGAACGAGATTTCAGCAT
TGCCAACAATCTCCTGACCGTGCATCGCGCGAGACTGGATCCGGTCTACG
TGGAGATGAACATGATTCTTCACATGAATATTGACAAGATTCCACCTGTT
TCGCAATCCCCCATCTCTGGATAA
back to top

protein sequence of NO18G00070.1

>NO18G00070.1-protein ID=NO18G00070.1-protein|Name=NO18G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MCDTPTQASHVKELIKNFVISKFQELWWDPASRKDDATGEGQSSRQKTLA
QFRPKKPRYATLFGEDEEDDCERGTRGGSVLRSVDWAEHQLNEYLACFQS
LLAMPGGAAALERDFSIANNLLTVHRARLDPVYVEMNMILHMNIDKIPPV
SQSPISG*
back to top

mRNA from alignment at chr18:41551..42133-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00070.1 ID=NO18G00070.1|Name=NO18G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=583bp|location=Sequence derived from alignment at chr18:41551..42133- (Nannochloropsis oceanica)
ATGTGTGACACGCCCACACAAGCATCTCATGTGAAGGAGCTGATTAAAAA
TTTTGTGATTAGCAAATTCCAGGAGCTTTGGTGGGATCCCGCGTCACGGA
AAGACGATGCGACGGGGGAAGGGCAGTCATCGCGGCAGAAGACGTTGGCA
CAATTTCGACCCAAAAAACCTCGTTATGCTACGCTCTTTGGTGAAGATGA
AGAGGATGATTGTGAACGAGGAACGAGAGGGGGAAGTGTTCTACGCTCGG
TTGATTGGGCGGAGCACCAACTGAATGAGTACTTGGCGTGGTGCGCTGGG
AAGTGCGATAAAATAGGTGCAGCTAAAAGGATGGATTGGGATGAAGTGCC
TCACGGTGGTTGAAGACTGGATGCGGAATGTTCCCGGCGCTCGGTAAAGT
TTTCAAAGTCTTCTGGCGATGCCGGGGGGGGCAGCCGCGCTGGAACGAGA
TTTCAGCATTGCCAACAATCTCCTGACCGTGCATCGCGCGAGACTGGATC
CGGTCTACGTGGAGATGAACATGATTCTTCACATGAATATTGACAAGATT
CCACCTGTTTCGCAATCCCCCATCTCTGGATAA
back to top

Coding sequence (CDS) from alignment at chr18:41551..42133-

>NO18G00070.1 ID=NO18G00070.1|Name=NO18G00070.1|organism=Nannochloropsis oceanica|type=CDS|length=474bp|location=Sequence derived from alignment at chr18:41551..42133- (Nannochloropsis oceanica)
ATGTGTGACACGCCCACACAAGCATCTCATGTGAAGGAGCTGATTAAAAA
TTTTGTGATTAGCAAATTCCAGGAGCTTTGGTGGGATCCCGCGTCACGGA
AAGACGATGCGACGGGGGAAGGGCAGTCATCGCGGCAGAAGACGTTGGCA
CAATTTCGACCCAAAAAACCTCGTTATGCTACGCTCTTTGGTGAAGATGA
AGAGGATGATTGTGAACGAGGAACGAGAGGGGGAAGTGTTCTACGCTCGG
TTGATTGGGCGGAGCACCAACTGAATGAGTACTTGGCGTGTTTTCAAAGT
CTTCTGGCGATGCCGGGGGGGGCAGCCGCGCTGGAACGAGATTTCAGCAT
TGCCAACAATCTCCTGACCGTGCATCGCGCGAGACTGGATCCGGTCTACG
TGGAGATGAACATGATTCTTCACATGAATATTGACAAGATTCCACCTGTT
TCGCAATCCCCCATCTCTGGATAA
back to top
Synonyms
Publications