NO17G02930.1, NO17G02930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02930.1
Unique NameNO17G02930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4946
Alignment locationchr17:857303..862389 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:857303..862389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO17G02930.1 vs.
Match: XP_005853964.1 (hypothetical protein NGA_0462000 [Nannochloropsis gaditana CCMP526]; EKU22398.1 hypothetical protein NGA_0462000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1376.3 bits (3561), Expect = 0.000e+0
Identity = 723/1051 (68.79%), Postives = 840/1051 (79.92%), Query Frame = 0
Query:    9 RTRRYVYGGLLAAVGVAVALALVFTVGGAGQKKDKAAVA-ESTVAPLDTDVNIKDALDGFKPVQNAKPATPITTPKVTVPVTGSSTDGNEKTFNQADADYVKKGILGDPFQAIATSGADLSLKDFVGENSCWPQDGDELTDAVENQGCELVVLANGEAGAYEIDEDIKVNRYVRVMGNPAVLPQIDAEEAIRGFTVGPGGFLELQFVRLRGGGGETRDRYGLEGLGLDSQVGEVRGGGVAVEPGALGSSFVGVTFIAVANDLDSVTGAIEDTFNLVGGRLYGGHVFVAAGTVTFFGCNFWDTTLLLPFTDQVTIGGDVLVVAGNAFFTGCTFTATLLFGSFGGMGFNVAVLGGNAVFTFCVIQAQGVAQSANGAGQVLFVGGGTMIVTGMDFRFASAILFFSGIGDFFVGGGVMIFTGVTIENTYPILAAYGAGFYLAVGAGVMVETGVTYVQWNCPAHLGLTGASIFLGTGVSIHVGVPASFYGTTVLVTGNGGFSYNGAGYSLWLGCPIAVFVATFAFFGIGGLVSQPAGFMVYLGCPAYTPAALAYFSGLGVIMFLGAGSAVIGGSPVAAPAFKFASRPDGTPNYWIMGNGDY-TKGIGYYAKNFTNEVTPPPKV-----RALST-DDLHSAVSELRAERRLSVSSISSLLGSFKETSGN-RFLGADMRVAPTF---NKEIIKTLSSWVPSNMIEGTKEI---LKLGDGVESRGPLLGTAPDSELDSCSFCGDGEDV---SGFCTKFDSCSAMQEKHPE-AEAAFHPDEIKFDPTHVVIATFNPTSKEGQKVDAEDFRDAFRSFFLAEGTTGVSVAAYSDEPDELFLEMMPKRKLSGLTNGEFPISTPLKAAFIVSDLELANSIKAMMEGHTTDEYKKMQGFVIQYMSEDGVDIGALDGGIEKVISIPAYNSPDFSTAFEKEASAAAGTNSIRLIDGDHTGLPLSHAAAGSTYTVLLANFPKNIPLTLQLLGSQEVGGVSKQTATSLASVKTDKDGGAKVTWNVPKDQALGDYYLKASDATGLIFGMTPTLEVTAAPKRKLWGPHMTL 1041
            R RRYVYGGLLAAVGVAVALALVFTVGGAGQK DKAAVA E  VA LDTDV+                    T PK + P   +ST    +TF  A+A+ +   I GDP QAIAT GAD++LKDFVG+NSCWP DG EL DAVENQGCELVVL++G+  AY +DEDIKVNRYVRVMGNPAVLPQIDAE+A R FTVGPGG LELQFVR+R GGG  RDRYGLEG G  S VGEVRGG V+VEPGALG++FVGVTFIAVAND DSV GAIED  + VGGR+YGGHV+VAAGTV FFGCNFWDTTLLLPFTDQV+IGGDVLVVAGNAFFTGCTFTATLLFG+FGG GFNVAVLGGNAVFTFCVIQAQGVAQSANGAGQ+LFVGGGTMI+TG+DFRFA+ ILFFSGIGDFFVGGGVMIFTGVTIENTYPILAAYGAGFYLAVG GVMVETGVTYVQ+NCPAH GLTGASIF G GVSIHVGVPASFYGTTVL TG GGFSYNGAGYSLWLG PIA+F+ATFAFFG+GGL SQPAGFMVYLGCPA+ PAAL YF+GLG +M+LGAG AVIGGSPV APAFKF S P+G  NY++ GNGD    GIGYY KN +   TP PK+     R L+T +D H+ V +LRAERRLSVS++S LL +F +  G   FLGAD++V P     N E++K LSSWVP+ +++G K+I    K G  V  RGPLL    DS +  C FCG+G+ V    G CTKFDSC+A++EK P  +EAAF  +E+++D  HVV+ATFNPT+  G+ V  EDFRDAFRS+FLA  TTGVSV+A+ D+PDELF E +P R LS L + +FP STPL+A F+ +D   A ++ + ++  T+  Y+ M+ +V  ++S DGV IGA+DG +EKV+ +PAYN+P++S AF KEA AAAGTNSIRLIDG+H GLP+SH AAG TYTVLL+ FPKN+ +T+QL+GSQE+ G +KQT + ++S+KTDKDG A +TW VP DQ LGDYYLKA+D TGLIFGMTP+LEVTAAPKR+LWGPHM L
Sbjct:    7 RARRYVYGGLLAAVGVAVALALVFTVGGAGQK-DKAAVASEPNVASLDTDVDTW------------------TPPKASEPEESASTG---QTFTNANANALTGAIKGDPLQAIATMGADVNLKDFVGQNSCWPADGAELLDAVENQGCELVVLSSGDPDAYALDEDIKVNRYVRVMGNPAVLPQIDAEDAERAFTVGPGGLLELQFVRVRQGGGTVRDRYGLEGSGSSSVVGEVRGGCVSVEPGALGANFVGVTFIAVANDWDSVQGAIEDQIDFVGGRIYGGHVYVAAGTVNFFGCNFWDTTLLLPFTDQVSIGGDVLVVAGNAFFTGCTFTATLLFGNFGGAGFNVAVLGGNAVFTFCVIQAQGVAQSANGAGQILFVGGGTMILTGLDFRFAAPILFFSGIGDFFVGGGVMIFTGVTIENTYPILAAYGAGFYLAVGGGVMVETGVTYVQFNCPAHQGLTGASIFTGAGVSIHVGVPASFYGTTVLFTGQGGFSYNGAGYSLWLGSPIAIFLATFAFFGLGGLTSQPAGFMVYLGCPAFLPAALVYFAGLGAVMYLGAGGAVIGGSPVFAPAFKFYSSPEGVANYYVQGNGDAPNNGIGYYDKNTSIIATPVPKIKPNKTRILATEEDFHNEVRKLRAERRLSVSAVSDLLFNFMDADGGVSFLGADLKVQPYIDLGNNEVVKELSSWVPAGILQGAKDIGLLNKFGSEV-GRGPLLEMQADS-VTECQFCGEGDVVGSNKGACTKFDSCNALKEKAPAGSEAAFDSNEVEYDAWHVVMATFNPTTPAGESVAPEDFRDAFRSYFLANKTTGVSVSAFLDQPDELFKESIPARALSALADDKFPASTPLRAVFLFNDDGKAEAVASALQDTTSSWYEDMELYVQDFLSLDGVQIGAMDGELEKVLYVPAYNTPEWSKAFAKEADAAAGTNSIRLIDGEHAGLPMSHVAAGQTYTVLLSKFPKNLDMTVQLIGSQELKGKNKQTMSPISSIKTDKDGSASITWKVPADQPLGDYYLKANDKTGLIFGMTPSLEVTAAPKRRLWGPHMEL 1033          
The following BLAST results are available for this feature:
BLAST of NO17G02930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853964.10.000e+068.79hypothetical protein NGA_0462000 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02930NO17G02930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02930.1NO17G02930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02930.1.cds1NO17G02930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02930.1.cds2NO17G02930.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02930.1 ID=NO17G02930.1|Name=NO17G02930.1|organism=Nannochloropsis oceanica|type=mRNA|length=4946bp
ATTACCGCTTCTCTGGTTTCTCCCCGCCAAGAAAATGGTGTCGCTTCTCC
CCTTCTCTATTTCTCCTCCATTTTGGGGATTGCCTTGTATTCCTTTTCCT
TATCGAGTCAAAACATGGGACTCTGTAGCCGCAGTTGCTCATGCGCGTCC
TTCGTTCTGTATGGGCCATTGCGCATGCCACCTGCGGACAGCCCCCCTCA
TTCTCTTTGTCGTGGTCTACGCAGCTTGAGTATACTTAAGGAGCGATCGA
TCGTTTGACTCACTCCTGGAAGCCCGCCGCTCCACATACAAGTATTTGCC
TCACAAACATGATCTTGGTCATACACCACGCTTCCCACGAAGAGCCTGAG
ACGAGGTACCGCGCATGTGTGGGCGCTTCCCTGCCGCGTACAAGGAGCTG
TCAGTTGGTATAGCTCATGGATCCAGCCATGCACTGGTTTGACACGCGCA
GAAGTGCGCTCGTACACAAGCTCGCGCTTAGGTCTTCACCGCCCTCACTA
ACCCACAGAGAGCGGCCTGCGCCCGGGACTCAAGACCATGTCCAACAGGG
GCTGATGGGGCATTCCTCGTGCATTGACAGGGATATGGCCGCCTGTGCTG
ACATGACAAATTCCCCTCCAAAACTATCTGACTCCACTCACGTCTTCCCA
CCTGTCCCCGTCTTTACCACAGGGTAGCTCCAAGCGGTGGCCGCTCTACT
TCATCTTCCCGTAAGGAAAAAAAAGAGAGAGAGCGCCTCGTCCTCTTTTC
TTCCGAACTTCCCTCCCCCATATTAGCAACATGACTGCTGACTCGCGCCC
CTCGCGCACTCGGCGTTACGTTTACGGTGGGCTACTGGCCGCTGTAGGCG
TGGCCGTGGCTCTCGCCCTCGTGTTCACTGTGGGCGGAGCCGGCCAGAAA
AAAGACAAGGCCGCGGTTGCCGAGAGCACCGTCGCCCCTCTGGACACGGA
TGTGAACATCAAGGACGCGCTCGACGGTTTTAAGCCGGTGCAGAATGCCA
AGCCCGCCACCCCCATCACAACACCTAAGGTCACGGTCCCGGTCACTGGG
TCCTCCACCGATGGAAACGAGAAAACTTTCAATCAGGCGGACGCTGATTA
CGTTAAGAAGGGCATTTTGGGAGACCCGTTCCAGGCTATCGCTACCTCGG
GCGCCGACCTGAGCTTGAAGGACTTTGTGGGCGAGAACTCTTGCTGGCCT
CAGGACGGTGACGAGCTCACTGACGCCGTAGAGAACCAGGGCTGCGAGCT
GGTGGTGCTCGCCAATGGAGAAGCGGGCGCCTACGAGATCGACGAGGATA
TCAAGGTGAACCGTTATGTCCGCGTGATGGGCAACCCCGCCGTGCTGCCC
CAGATCGATGCCGAGGAGGCCATTCGTGGCTTCACGGTCGGTCCTGGCGG
CTTCCTGGAGCTGCAGTTCGTCCGCCTTCGTGGCGGTGGGGGCGAGACCC
GCGACCGATATGGCTTGGAGGGGCTTGGCCTCGACTCGCAAGTCGGAGAG
GTCCGGGGTGGTGGTGTTGCCGTGGAGCCCGGTGCCCTGGGCTCTAGCTT
TGTCGGTGTGACCTTCATCGCTGTCGCGAACGACCTGGACTCGGTGACGG
GCGCCATCGAAGACACTTTCAACTTGGTCGGCGGGCGCCTCTACGGCGGG
CACGTCTTCGTGGCGGCCGGCACGGTCACCTTCTTCGGCTGCAATTTCTG
GGACACCACCCTCCTGCTGCCCTTCACGGACCAGGTCACTATTGGCGGGG
ATGTGCTCGTGGTGGCTGGTAATGCCTTCTTCACCGGTTGCACCTTCACG
GCTACCCTTCTCTTCGGCAGCTTTGGCGGCATGGGTTTCAATGTGGCTGT
GCTGGGCGGTAACGCTGTCTTCACTTTCTGTGTCATCCAGGCGCAGGGCG
TGGCTCAGTCCGCGAACGGTGCTGGCCAGGTCTTGTTCGTCGGTGGCGGT
ACCATGATCGTCACTGGCATGGACTTCCGATTCGCTTCTGCCATCCTCTT
TTTCTCGGGCATTGGCGATTTCTTCGTCGGCGGGGGTGTCATGATCTTCA
CGGGCGTCACCATCGAGAACACCTACCCCATCCTTGCTGCCTACGGCGCT
GGTTTCTACTTGGCTGTCGGTGCCGGCGTCATGGTCGAGACTGGTGTGAC
CTACGTCCAGTGGAACTGCCCCGCTCACTTGGGCCTGACGGGCGCGTCCA
TCTTCCTGGGAACGGGTGTCTCCATTCACGTGGGTGTTCCCGCGTCCTTC
TATGGAACCACGGTCCTGGTCACGGGCAACGGTGGTTTCTCTTACAACGG
TGCGGGTTACTCCCTCTGGTTGGGCTGCCCCATCGCCGTGTTCGTGGCGA
CTTTCGCTTTCTTCGGCATTGGTGGGCTTGTCTCCCAGCCGGCAGGCTTC
ATGGTCTACCTCGGCTGCCCCGCATACACCCCTGCGGCGCTCGCCTACTT
CTCTGGCCTCGGTGTTATCATGTTCCTCGGCGCCGGCAGCGCTGTCATCG
GTGGTTCTCCCGTGGCCGCGCCCGCATTCAAGTTCGCGTCCAGGCCCGAT
GGTACTCCCAACTACTGGATCATGGGCAACGGCGATTACACCAAGGGCAT
TGGCTACTACGCCAAGAACTTCACGAATGAGGTCACTCCCCCTCCTAAGG
TTCGCGCCCTCTCCACCGATGACCTCCACAGCGCGGTCAGTGAGCTCCGT
GCCGAGCGCCGTCTCTCCGTCTCGTCCATCAGCTCCCTTCTTGGCAGCTT
CAAGGAGACATCCGGCAACCGATTCTTAGGTGCGGACATGCGTGTGGCGC
CGACGTTTAACAAGGAGATTATTAAGACGCTCTCGAGCTGGGTACCTAGC
AATATGATCGAAGGTACCAAGGAAATCTTGAAGTTGGGGGATGGAGTCGA
GTCCCGTGGGCCTCTCCTGGGCACAGCCCCCGACTCGGAGCTGGACTCTT
GCAGCTTCTGCGGAGACGGCGAGGACGTCAGCGGGTTCTGCACGAAGTTC
GACTCCTGCAGTGCCATGCAGGAGAAGCACCCGGAGGCCGAGGCGGCGTT
CCACCCGGACGAGATTAAGTTCGACCCTACCCACGTCGTCATCGCCACGT
TCAACCCCACCTCTAAGGAGGGCCAGAAGGTGGACGCCGAGGACTTCCGT
GATGCCTTCCGCTCCTTCTTCCTCGCCGAGGGGACCACCGGCGTCTCCGT
CGCTGCTTACTCGGACGAGCCCGACGAGCTGTTCCTGGAGATGATGCCCA
AGCGCAAGCTCTCAGGCTTGACCAACGGGGAGTTCCCCATCTCCACACCC
CTCAAGGCTGCTTTTATCGTCAGCGACCTCGAGCTGGCGAATTCCATCAA
GGCTATGATGGAGGGTCATACCACAGATGAGTACAAGAAGATGCAGGGCT
TCGTGATTCAGTACATGAGCGAGGATGGTGTGGACATTGGTGCCTTGGAC
GGGGGGATCGAGAAGGTCATCAGCATTCCCGCCTACAACTCGCCCGACTT
CTCCACTGCCTTCGAGAAGGAGGCGAGTGCCGCTGCGGGCACCAACTCCA
TCCGTCTTATCGACGGGGACCACACTGGCCTGCCCCTTTCCCACGCCGCC
GCGGGCAGCACCTACACGGTTCTCCTGGCGAACTTCCCCAAAAACATTCC
TCTGACGCTGCAGTTGCTCGGCTCCCAGGAGGTGGGCGGCGTAAGCAAGC
AGACTGCCACGTCCCTGGCCTCGGTCAAGACCGACAAGGATGGCGGCGCT
AAGGTCACTTGGAATGTGCCGAAGGACCAGGCTCTGGGTGATTACTACCT
CAAGGCCTCGGACGCCACGGGCCTCATCTTCGGCATGACCCCCACGCTGG
AGGTGACCGCCGCCCCCAAGCGTAAGCTCTGGGGACCGCACATGACTCTC
TAAGGAGTTTATTGTTCTTGCTTTGAAATAAGGGAAGGAGGAAGGGTGGA
GAGGATGAAGGGTGAGAAGGAGAGAGAGAGCAAGGAGAGGATCACAGGTA
TGCAGTGTGGGAAAGGCCTTGGCCGGTCCCGGCATGTGTATGTGTAAGTC
TTGTCTTTCGACTCAGTTCGTCTTTGCCGAATGTTCTCTAGGAAAGTTGT
TATTTTGTCAGCTGATTTATAGCACGCTAGAAGTGCAACGTTAGCACCCT
CATTCACGGTAGCATGGGAAGGGAGGAAAGGGAGGAGTGATGGTTGAAGG
AATGGAGGCAGTATCCTAGCGCTGCCTGACTTTCCTTTTGTAAGTCTTTC
CCTTCTTGCTTGTGCCACACCCATGGCTACACAGATGGTTACGAGGCCAC
ACGCATTTGAGATAGCCTGCTATTCTCTTGGTGCGTGTGTGTCAGTGAGT
GCCTTTTGAATTAATGAGTACGTGCGTCTGTCTTTCTTCCTGGTTCGATG
GTCCCTGTGCACGGGGGTGGGTGAATGAATGGAGGAAGAGGGCTCTCAAG
GTGTCTCCTTGTGAGAAGCCGAGACGGTCATCCACGGAAGAAAGGGGGTA
TATAAAAATATAAATATATATAGAGGGAGAGAAAGCAGTGAGAGGATGAG
GAACAAGAAGGGGAGGAAGCAGCCAGCCCGATCACATGAGCGCGATTTAA
ATAATCATGGATAAGCCCAAATCAGTCAAACAAATTCATGTGTGTGGGGG
GGGGCGCGAGAGAGAGTGAACGGAGAAAGGGAAGTGACATCTAAATTCTA
TGTAATCTATGTGATAAGTATGGAGCAGAAGCAACGACAAAGTACTCTAC
TGATCAAGGAAGGGCATATTACATGCAAGGAGAGGGAGGGAAGGAGGGCG
GGCGGGCTGGTCTACCAGAGGGGAGGATCGGAGAGGGGATAAGTCTACCT
ACATGCTCTCTTTGTCGATTTTGATCCATGGGAAGGCAGGCGCAGGGAGT
AAACAAACAACAGGAAGGAAAAGAACTAAGAAGAGACCATATACGG
back to top

protein sequence of NO17G02930.1

>NO17G02930.1-protein ID=NO17G02930.1-protein|Name=NO17G02930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1041bp
MTADSRPSRTRRYVYGGLLAAVGVAVALALVFTVGGAGQKKDKAAVAEST
VAPLDTDVNIKDALDGFKPVQNAKPATPITTPKVTVPVTGSSTDGNEKTF
NQADADYVKKGILGDPFQAIATSGADLSLKDFVGENSCWPQDGDELTDAV
ENQGCELVVLANGEAGAYEIDEDIKVNRYVRVMGNPAVLPQIDAEEAIRG
FTVGPGGFLELQFVRLRGGGGETRDRYGLEGLGLDSQVGEVRGGGVAVEP
GALGSSFVGVTFIAVANDLDSVTGAIEDTFNLVGGRLYGGHVFVAAGTVT
FFGCNFWDTTLLLPFTDQVTIGGDVLVVAGNAFFTGCTFTATLLFGSFGG
MGFNVAVLGGNAVFTFCVIQAQGVAQSANGAGQVLFVGGGTMIVTGMDFR
FASAILFFSGIGDFFVGGGVMIFTGVTIENTYPILAAYGAGFYLAVGAGV
MVETGVTYVQWNCPAHLGLTGASIFLGTGVSIHVGVPASFYGTTVLVTGN
GGFSYNGAGYSLWLGCPIAVFVATFAFFGIGGLVSQPAGFMVYLGCPAYT
PAALAYFSGLGVIMFLGAGSAVIGGSPVAAPAFKFASRPDGTPNYWIMGN
GDYTKGIGYYAKNFTNEVTPPPKVRALSTDDLHSAVSELRAERRLSVSSI
SSLLGSFKETSGNRFLGADMRVAPTFNKEIIKTLSSWVPSNMIEGTKEIL
KLGDGVESRGPLLGTAPDSELDSCSFCGDGEDVSGFCTKFDSCSAMQEKH
PEAEAAFHPDEIKFDPTHVVIATFNPTSKEGQKVDAEDFRDAFRSFFLAE
GTTGVSVAAYSDEPDELFLEMMPKRKLSGLTNGEFPISTPLKAAFIVSDL
ELANSIKAMMEGHTTDEYKKMQGFVIQYMSEDGVDIGALDGGIEKVISIP
AYNSPDFSTAFEKEASAAAGTNSIRLIDGDHTGLPLSHAAAGSTYTVLLA
NFPKNIPLTLQLLGSQEVGGVSKQTATSLASVKTDKDGGAKVTWNVPKDQ
ALGDYYLKASDATGLIFGMTPTLEVTAAPKRKLWGPHMTL*
back to top

mRNA from alignment at chr17:857303..862389-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02930.1 ID=NO17G02930.1|Name=NO17G02930.1|organism=Nannochloropsis oceanica|type=mRNA|length=5087bp|location=Sequence derived from alignment at chr17:857303..862389- (Nannochloropsis oceanica)
ATTACCGCTTCTCTGGTTTCTCCCCGCCAAGAAAATGGTGTCGCTTCTCC CCTTCTCTATTTCTCCTCCATTTTGGGGATTGCCTTGTATTCCTTTTCCT TATCGAGTCAAAACATGGGACTCTGTAGCCGCAGTTGCTCATGCGCGTCC TTCGTTCTGTATGGGCCATTGCGCATGCCACCTGCGGACAGCCCCCCTCA TTCTCTTTGTCGTGGTCTACGCAGCTTGAGTATACTTAAGGAGCGATCGA TCGTTTGACTCACTCCTGGAAGCCCGCCGCTCCACATACAAGTATTTGCC TCACAAACATGATCTTGGTCATACACCACGCTTCCCACGAAGAGCCTGAG ACGAGGTACCGCGCATGTGTGGGCGCTTCCCTGCCGCGTACAAGGAGCTG TCAGTTGGTATAGCTCATGGATCCAGCCATGCACTGGTTTGACACGCGCA GAAGTGCGCTCGTACACAAGCTCGCGCTTAGGTCTTCACCGCCCTCACTA ACCCACAGAGAGCGGCCTGCGCCCGGGACTCAAGACCATGTCCAACAGGG GCTGATGGGGCATTCCTCGTGCATTGACAGGGATATGGCCGCCTGTGCTG ACATGACAAATTCCCCTCCAAAACTATCTGACTCCACTCACGTCTTCCCA CCTGTCCCCGTCTTTACCACAGGGTAGCTCCAAGCGGTGGCCGCTCTACT TCATCTTCCCGTAAGGAAAAAAAAGAGAGAGAGCGCCTCGTCCTCTTTTC TTCCGAACTTCCCTCCCCCATATTAGCAACATGACTGCTGACTCGCGCCC CTCGCGCACTCGGCGTTACGTTTACGGTGGGCTACTGGCCGCTGTAGGCG TGGCCGTGGCTCTCGCCCTCGTGTTCACTGTGGGCGGAGCCGGCCAGAAA AAAGACAAGGCCGCGGTTGCCGAGAGCACCGTCGCCCCTCTGGACACGGA TGTGAACATCAAGGACGCGCTCGACGGTTTTAAGCCGGTGCAGAATGCCA AGCCCGCCACCCCCATCACAACACCTAAGGTCACGGTCCCGGTCACTGGG TCCTCCACCGATGGAAACGAGAAAACTTTCAATCAGGTAAGATTTGAGAA AATGAGGCAGGAAATACACAGTGGGTGTGTCGTTGATGAGTGGGTGCTTA TCTTATCGTATCTGCGATGACAGACACTGAAAGAACACCATCCAAATATT TCTTTTTTCACTTCTCCTCCAACGCAGGCGGACGCTGATTACGTTAAGAA GGGCATTTTGGGAGACCCGTTCCAGGCTATCGCTACCTCGGGCGCCGACC TGAGCTTGAAGGACTTTGTGGGCGAGAACTCTTGCTGGCCTCAGGACGGT GACGAGCTCACTGACGCCGTAGAGAACCAGGGCTGCGAGCTGGTGGTGCT CGCCAATGGAGAAGCGGGCGCCTACGAGATCGACGAGGATATCAAGGTGA ACCGTTATGTCCGCGTGATGGGCAACCCCGCCGTGCTGCCCCAGATCGAT GCCGAGGAGGCCATTCGTGGCTTCACGGTCGGTCCTGGCGGCTTCCTGGA GCTGCAGTTCGTCCGCCTTCGTGGCGGTGGGGGCGAGACCCGCGACCGAT ATGGCTTGGAGGGGCTTGGCCTCGACTCGCAAGTCGGAGAGGTCCGGGGT GGTGGTGTTGCCGTGGAGCCCGGTGCCCTGGGCTCTAGCTTTGTCGGTGT GACCTTCATCGCTGTCGCGAACGACCTGGACTCGGTGACGGGCGCCATCG AAGACACTTTCAACTTGGTCGGCGGGCGCCTCTACGGCGGGCACGTCTTC GTGGCGGCCGGCACGGTCACCTTCTTCGGCTGCAATTTCTGGGACACCAC CCTCCTGCTGCCCTTCACGGACCAGGTCACTATTGGCGGGGATGTGCTCG TGGTGGCTGGTAATGCCTTCTTCACCGGTTGCACCTTCACGGCTACCCTT CTCTTCGGCAGCTTTGGCGGCATGGGTTTCAATGTGGCTGTGCTGGGCGG TAACGCTGTCTTCACTTTCTGTGTCATCCAGGCGCAGGGCGTGGCTCAGT CCGCGAACGGTGCTGGCCAGGTCTTGTTCGTCGGTGGCGGTACCATGATC GTCACTGGCATGGACTTCCGATTCGCTTCTGCCATCCTCTTTTTCTCGGG CATTGGCGATTTCTTCGTCGGCGGGGGTGTCATGATCTTCACGGGCGTCA CCATCGAGAACACCTACCCCATCCTTGCTGCCTACGGCGCTGGTTTCTAC TTGGCTGTCGGTGCCGGCGTCATGGTCGAGACTGGTGTGACCTACGTCCA GTGGAACTGCCCCGCTCACTTGGGCCTGACGGGCGCGTCCATCTTCCTGG GAACGGGTGTCTCCATTCACGTGGGTGTTCCCGCGTCCTTCTATGGAACC ACGGTCCTGGTCACGGGCAACGGTGGTTTCTCTTACAACGGTGCGGGTTA CTCCCTCTGGTTGGGCTGCCCCATCGCCGTGTTCGTGGCGACTTTCGCTT TCTTCGGCATTGGTGGGCTTGTCTCCCAGCCGGCAGGCTTCATGGTCTAC CTCGGCTGCCCCGCATACACCCCTGCGGCGCTCGCCTACTTCTCTGGCCT CGGTGTTATCATGTTCCTCGGCGCCGGCAGCGCTGTCATCGGTGGTTCTC CCGTGGCCGCGCCCGCATTCAAGTTCGCGTCCAGGCCCGATGGTACTCCC AACTACTGGATCATGGGCAACGGCGATTACACCAAGGGCATTGGCTACTA CGCCAAGAACTTCACGAATGAGGTCACTCCCCCTCCTAAGGTTCGCGCCC TCTCCACCGATGACCTCCACAGCGCGGTCAGTGAGCTCCGTGCCGAGCGC CGTCTCTCCGTCTCGTCCATCAGCTCCCTTCTTGGCAGCTTCAAGGAGAC ATCCGGCAACCGATTCTTAGGTGCGGACATGCGTGTGGCGCCGACGTTTA ACAAGGAGATTATTAAGACGCTCTCGAGCTGGGTACCTAGCAATATGATC GAAGGTACCAAGGAAATCTTGAAGTTGGGGGATGGAGTCGAGTCCCGTGG GCCTCTCCTGGGCACAGCCCCCGACTCGGAGCTGGACTCTTGCAGCTTCT GCGGAGACGGCGAGGACGTCAGCGGGTTCTGCACGAAGTTCGACTCCTGC AGTGCCATGCAGGAGAAGCACCCGGAGGCCGAGGCGGCGTTCCACCCGGA CGAGATTAAGTTCGACCCTACCCACGTCGTCATCGCCACGTTCAACCCCA CCTCTAAGGAGGGCCAGAAGGTGGACGCCGAGGACTTCCGTGATGCCTTC CGCTCCTTCTTCCTCGCCGAGGGGACCACCGGCGTCTCCGTCGCTGCTTA CTCGGACGAGCCCGACGAGCTGTTCCTGGAGATGATGCCCAAGCGCAAGC TCTCAGGCTTGACCAACGGGGAGTTCCCCATCTCCACACCCCTCAAGGCT GCTTTTATCGTCAGCGACCTCGAGCTGGCGAATTCCATCAAGGCTATGAT GGAGGGTCATACCACAGATGAGTACAAGAAGATGCAGGGCTTCGTGATTC AGTACATGAGCGAGGATGGTGTGGACATTGGTGCCTTGGACGGGGGGATC GAGAAGGTCATCAGCATTCCCGCCTACAACTCGCCCGACTTCTCCACTGC CTTCGAGAAGGAGGCGAGTGCCGCTGCGGGCACCAACTCCATCCGTCTTA TCGACGGGGACCACACTGGCCTGCCCCTTTCCCACGCCGCCGCGGGCAGC ACCTACACGGTTCTCCTGGCGAACTTCCCCAAAAACATTCCTCTGACGCT GCAGTTGCTCGGCTCCCAGGAGGTGGGCGGCGTAAGCAAGCAGACTGCCA CGTCCCTGGCCTCGGTCAAGACCGACAAGGATGGCGGCGCTAAGGTCACT TGGAATGTGCCGAAGGACCAGGCTCTGGGTGATTACTACCTCAAGGCCTC GGACGCCACGGGCCTCATCTTCGGCATGACCCCCACGCTGGAGGTGACCG CCGCCCCCAAGCGTAAGCTCTGGGGACCGCACATGACTCTCTAAGGAGTT TATTGTTCTTGCTTTGAAATAAGGGAAGGAGGAAGGGTGGAGAGGATGAA GGGTGAGAAGGAGAGAGAGAGCAAGGAGAGGATCACAGGTATGCAGTGTG GGAAAGGCCTTGGCCGGTCCCGGCATGTGTATGTGTAAGTCTTGTCTTTC GACTCAGTTCGTCTTTGCCGAATGTTCTCTAGGAAAGTTGTTATTTTGTC AGCTGATTTATAGCACGCTAGAAGTGCAACGTTAGCACCCTCATTCACGG TAGCATGGGAAGGGAGGAAAGGGAGGAGTGATGGTTGAAGGAATGGAGGC AGTATCCTAGCGCTGCCTGACTTTCCTTTTGTAAGTCTTTCCCTTCTTGC TTGTGCCACACCCATGGCTACACAGATGGTTACGAGGCCACACGCATTTG AGATAGCCTGCTATTCTCTTGGTGCGTGTGTGTCAGTGAGTGCCTTTTGA ATTAATGAGTACGTGCGTCTGTCTTTCTTCCTGGTTCGATGGTCCCTGTG CACGGGGGTGGGTGAATGAATGGAGGAAGAGGGCTCTCAAGGTGTCTCCT TGTGAGAAGCCGAGACGGTCATCCACGGAAGAAAGGGGGTATATAAAAAT ATAAATATATATAGAGGGAGAGAAAGCAGTGAGAGGATGAGGAACAAGAA GGGGAGGAAGCAGCCAGCCCGATCACATGAGCGCGATTTAAATAATCATG GATAAGCCCAAATCAGTCAAACAAATTCATGTGTGTGGGGGGGGGCGCGA GAGAGAGTGAACGGAGAAAGGGAAGTGACATCTAAATTCTATGTAATCTA TGTGATAAGTATGGAGCAGAAGCAACGACAAAGTACTCTACTGATCAAGG AAGGGCATATTACATGCAAGGAGAGGGAGGGAAGGAGGGCGGGCGGGCTG GTCTACCAGAGGGGAGGATCGGAGAGGGGATAAGTCTACCTACATGCTCT CTTTGTCGATTTTGATCCATGGGAAGGCAGGCGCAGGGAGTAAACAAACA ACAGGAAGGAAAAGAACTAAGAAGAGACCATATACGG
back to top

Coding sequence (CDS) from alignment at chr17:857303..862389-

>NO17G02930.1 ID=NO17G02930.1|Name=NO17G02930.1|organism=Nannochloropsis oceanica|type=CDS|length=3123bp|location=Sequence derived from alignment at chr17:857303..862389- (Nannochloropsis oceanica)
ATGACTGCTGACTCGCGCCCCTCGCGCACTCGGCGTTACGTTTACGGTGG
GCTACTGGCCGCTGTAGGCGTGGCCGTGGCTCTCGCCCTCGTGTTCACTG
TGGGCGGAGCCGGCCAGAAAAAAGACAAGGCCGCGGTTGCCGAGAGCACC
GTCGCCCCTCTGGACACGGATGTGAACATCAAGGACGCGCTCGACGGTTT
TAAGCCGGTGCAGAATGCCAAGCCCGCCACCCCCATCACAACACCTAAGG
TCACGGTCCCGGTCACTGGGTCCTCCACCGATGGAAACGAGAAAACTTTC
AATCAGGCGGACGCTGATTACGTTAAGAAGGGCATTTTGGGAGACCCGTT
CCAGGCTATCGCTACCTCGGGCGCCGACCTGAGCTTGAAGGACTTTGTGG
GCGAGAACTCTTGCTGGCCTCAGGACGGTGACGAGCTCACTGACGCCGTA
GAGAACCAGGGCTGCGAGCTGGTGGTGCTCGCCAATGGAGAAGCGGGCGC
CTACGAGATCGACGAGGATATCAAGGTGAACCGTTATGTCCGCGTGATGG
GCAACCCCGCCGTGCTGCCCCAGATCGATGCCGAGGAGGCCATTCGTGGC
TTCACGGTCGGTCCTGGCGGCTTCCTGGAGCTGCAGTTCGTCCGCCTTCG
TGGCGGTGGGGGCGAGACCCGCGACCGATATGGCTTGGAGGGGCTTGGCC
TCGACTCGCAAGTCGGAGAGGTCCGGGGTGGTGGTGTTGCCGTGGAGCCC
GGTGCCCTGGGCTCTAGCTTTGTCGGTGTGACCTTCATCGCTGTCGCGAA
CGACCTGGACTCGGTGACGGGCGCCATCGAAGACACTTTCAACTTGGTCG
GCGGGCGCCTCTACGGCGGGCACGTCTTCGTGGCGGCCGGCACGGTCACC
TTCTTCGGCTGCAATTTCTGGGACACCACCCTCCTGCTGCCCTTCACGGA
CCAGGTCACTATTGGCGGGGATGTGCTCGTGGTGGCTGGTAATGCCTTCT
TCACCGGTTGCACCTTCACGGCTACCCTTCTCTTCGGCAGCTTTGGCGGC
ATGGGTTTCAATGTGGCTGTGCTGGGCGGTAACGCTGTCTTCACTTTCTG
TGTCATCCAGGCGCAGGGCGTGGCTCAGTCCGCGAACGGTGCTGGCCAGG
TCTTGTTCGTCGGTGGCGGTACCATGATCGTCACTGGCATGGACTTCCGA
TTCGCTTCTGCCATCCTCTTTTTCTCGGGCATTGGCGATTTCTTCGTCGG
CGGGGGTGTCATGATCTTCACGGGCGTCACCATCGAGAACACCTACCCCA
TCCTTGCTGCCTACGGCGCTGGTTTCTACTTGGCTGTCGGTGCCGGCGTC
ATGGTCGAGACTGGTGTGACCTACGTCCAGTGGAACTGCCCCGCTCACTT
GGGCCTGACGGGCGCGTCCATCTTCCTGGGAACGGGTGTCTCCATTCACG
TGGGTGTTCCCGCGTCCTTCTATGGAACCACGGTCCTGGTCACGGGCAAC
GGTGGTTTCTCTTACAACGGTGCGGGTTACTCCCTCTGGTTGGGCTGCCC
CATCGCCGTGTTCGTGGCGACTTTCGCTTTCTTCGGCATTGGTGGGCTTG
TCTCCCAGCCGGCAGGCTTCATGGTCTACCTCGGCTGCCCCGCATACACC
CCTGCGGCGCTCGCCTACTTCTCTGGCCTCGGTGTTATCATGTTCCTCGG
CGCCGGCAGCGCTGTCATCGGTGGTTCTCCCGTGGCCGCGCCCGCATTCA
AGTTCGCGTCCAGGCCCGATGGTACTCCCAACTACTGGATCATGGGCAAC
GGCGATTACACCAAGGGCATTGGCTACTACGCCAAGAACTTCACGAATGA
GGTCACTCCCCCTCCTAAGGTTCGCGCCCTCTCCACCGATGACCTCCACA
GCGCGGTCAGTGAGCTCCGTGCCGAGCGCCGTCTCTCCGTCTCGTCCATC
AGCTCCCTTCTTGGCAGCTTCAAGGAGACATCCGGCAACCGATTCTTAGG
TGCGGACATGCGTGTGGCGCCGACGTTTAACAAGGAGATTATTAAGACGC
TCTCGAGCTGGGTACCTAGCAATATGATCGAAGGTACCAAGGAAATCTTG
AAGTTGGGGGATGGAGTCGAGTCCCGTGGGCCTCTCCTGGGCACAGCCCC
CGACTCGGAGCTGGACTCTTGCAGCTTCTGCGGAGACGGCGAGGACGTCA
GCGGGTTCTGCACGAAGTTCGACTCCTGCAGTGCCATGCAGGAGAAGCAC
CCGGAGGCCGAGGCGGCGTTCCACCCGGACGAGATTAAGTTCGACCCTAC
CCACGTCGTCATCGCCACGTTCAACCCCACCTCTAAGGAGGGCCAGAAGG
TGGACGCCGAGGACTTCCGTGATGCCTTCCGCTCCTTCTTCCTCGCCGAG
GGGACCACCGGCGTCTCCGTCGCTGCTTACTCGGACGAGCCCGACGAGCT
GTTCCTGGAGATGATGCCCAAGCGCAAGCTCTCAGGCTTGACCAACGGGG
AGTTCCCCATCTCCACACCCCTCAAGGCTGCTTTTATCGTCAGCGACCTC
GAGCTGGCGAATTCCATCAAGGCTATGATGGAGGGTCATACCACAGATGA
GTACAAGAAGATGCAGGGCTTCGTGATTCAGTACATGAGCGAGGATGGTG
TGGACATTGGTGCCTTGGACGGGGGGATCGAGAAGGTCATCAGCATTCCC
GCCTACAACTCGCCCGACTTCTCCACTGCCTTCGAGAAGGAGGCGAGTGC
CGCTGCGGGCACCAACTCCATCCGTCTTATCGACGGGGACCACACTGGCC
TGCCCCTTTCCCACGCCGCCGCGGGCAGCACCTACACGGTTCTCCTGGCG
AACTTCCCCAAAAACATTCCTCTGACGCTGCAGTTGCTCGGCTCCCAGGA
GGTGGGCGGCGTAAGCAAGCAGACTGCCACGTCCCTGGCCTCGGTCAAGA
CCGACAAGGATGGCGGCGCTAAGGTCACTTGGAATGTGCCGAAGGACCAG
GCTCTGGGTGATTACTACCTCAAGGCCTCGGACGCCACGGGCCTCATCTT
CGGCATGACCCCCACGCTGGAGGTGACCGCCGCCCCCAAGCGTAAGCTCT
GGGGACCGCACATGACTCTCTAA
back to top
Synonyms
Publications