NO17G02870.1, NO17G02870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02870.1
Unique NameNO17G02870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2172
Alignment locationchr17:839329..841500 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:839329..841500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G02870.1 vs.
Match: EWM23162.1 (cytochrome p450 [Nannochloropsis gaditana])

HSP 1 Score: 310.8 bits (795), Expect = 8.900e-81
Identity = 182/498 (36.55%), Postives = 282/498 (56.63%), Query Frame = 0 
Query:   66 TALPGFVVASATLLLVLALAYDSFSGRAPGHVPSPPSPIPLIGQSKELHGYRNRALEWLTMYSRRFGGK----TWTFKVMFRPRVYVILSPENVEYILKTNFTNYGKGPMFRSRMKELLGEGIFNVDGSRWYEQRKISSHLFTHRNFKQRMLNTINKDVHALVNIVGQAADKAKGNTSGAAEVNFSRLFARYTLDAIGEIAFGENIGALKGESVDFVTSFDYIQSFLNDLVLKPPGYAFYCRHFTPEGKRYTECLATLNTY----VRRMVATAKDETTSEE-----------LVARGDLLALFMTRTDSDGKP---FTEEYLRDIVVNMTIAGRDTTAYALAWALYLLATHREVQIKACAEAQAAYAIAEDEGKDLGYEAIDRLTYLDAVFTEVLRLYPSVPKNPKCVYQDDVLPDGTPVRAGSYVMYVPYVMARLPELWGPEPEKFDPERHLQGRHRPSPYLWPAFQAGPRTCLGQKLAYMEAKAVLCALLANFEFS 542
            T+  G +V +  + + + L   S  G    ++P+PP+    +  S E+     R L+W    S ++GG+    TWTF+V  +PR+ V   PENV +IL TN   YGKGP++R     +LG+GIF+ D   W+ QRK ++++F   NFK+ ML+ +       ++++     +A  +    A VN    F + TLD IGEIAFG+++G+L G++V+F+ +FD+ Q + +DL    PG A++  + TP G R+      L T+    V+ M+  A DE   ++           +  +  +L+ F+ +   +       T  YL D+++N  IAGRDT A A +WA++LL+ H ++Q KA  EA           +   ++ I+RL Y+ AV TEVLRLYPSVPK  K V++DD LPDG+ V  GS+V++ PYVM RL  LW  +  KF PERHL  + +PS +++ AFQ GPR C+G  LAYM+ +  L  LL + +F+
Sbjct:   15 TSFSGLLVLAGFVAVAICLG-TSIGGSKRQNLPTPPNH-GFLANSLEVMANLPRLLDWFLEQSLKYGGEGGLGTWTFQVFMQPRMIVTHDPENVRHIL-TNVNTYGKGPVWRQNFYPILGDGIFSADFKNWFLQRKRAANMFKISNFKRSMLDAVRSKCLKCLDLISAQVRRASSSHPETAIVNLEEYFFKMTLDTIGEIAFGQDLGSLSGKNVEFMRAFDFCQMYASDLFFL-PGPAWFWNYCTPLGWRFRRQTQVLETHATCVVKEMITRALDEGALQDDPEGENREDVGVGRKETILSYFLQKESQESLKNDLRTVRYLSDVIMNFQIAGRDTVAQAFSWAVHLLSLHPDIQEKAHQEALLVLGSLR-AAEAATFDQINRLEYMRAVVTEVLRLYPSVPKEGKWVFKDDALPDGSRVSKGSWVVFSPYVMGRLESLWA-DAAKFKPERHLD-KPKPSNFVFTAFQGGPRICMGMNLAYMQLQYGLALLLLSCQFA 505
The following BLAST results are available for this feature:
BLAST of NO17G02870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23162.18.900e-8136.55cytochrome p450 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02870NO17G02870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02870.1NO17G02870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02870.1.cds1NO17G02870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02870.1 ID=NO17G02870.1|Name=NO17G02870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2172bp
CCACCAACACTCTCTCCGAAAAGCCACCGACATTTTCGAAGCGTTGCACC
GTCTCTATCGATACGATGGCAACTTCAGCCACCACTGCTGGCCTCCAGCC
GCCTAAAAAGTCCACCGAGTATATGTTGCCGCCGTCGAGCAAGAACAACG
ACAATTACAACATGACTATATCGCTCATTCTCAACCTGCTCTTTCTCGCA
CTGGTCCCTTTGCTTCCTGTCTACATCTGGATCTTGATGCACGTGCCTAC
TCGCGTTGTGACCGCGCTCCCGGGTTTCGTCGTCGCCTCGGCTACTCTTT
TACTCGTGTTGGCCCTTGCTTATGACTCGTTCTCCGGTCGCGCTCCTGGC
CACGTCCCGTCCCCACCGTCACCAATACCTCTAATTGGCCAGTCAAAAGA
GCTTCACGGCTACCGCAACCGGGCGCTGGAGTGGCTTACCATGTACTCTC
GGCGCTTTGGGGGCAAGACGTGGACGTTCAAGGTCATGTTTCGTCCTCGC
GTTTATGTCATTTTGAGCCCGGAAAATGTGGAGTACATCCTCAAAACCAA
TTTTACAAACTACGGCAAGGGTCCTATGTTCCGGTCACGCATGAAGGAGC
TTCTTGGGGAAGGGATCTTCAACGTGGATGGATCACGGTGGTACGAGCAA
CGCAAGATATCGTCGCATCTCTTTACGCACCGTAATTTCAAGCAGCGCAT
GCTCAACACCATCAACAAAGACGTGCATGCGCTTGTGAATATTGTCGGAC
AAGCTGCAGATAAGGCCAAGGGCAACACCAGTGGGGCGGCCGAGGTCAAT
TTCTCGCGTCTCTTTGCGCGCTACACTCTCGACGCCATTGGCGAGATAGC
GTTTGGGGAAAATATTGGGGCATTGAAGGGCGAGAGTGTGGACTTTGTGA
CTTCATTTGACTACATCCAAAGCTTCCTAAACGATCTAGTGCTCAAGCCT
CCCGGGTACGCATTTTATTGCCGGCACTTCACTCCTGAAGGCAAGCGCTA
CACCGAATGCCTGGCCACGCTCAACACGTACGTCCGACGCATGGTGGCGA
CAGCTAAGGACGAGACGACGTCCGAGGAGCTTGTAGCCCGCGGCGATTTG
CTGGCACTCTTTATGACGCGTACTGACTCGGACGGCAAGCCTTTCACTGA
AGAATATCTACGAGACATTGTCGTGAACATGACCATTGCTGGGCGCGACA
CGACAGCATACGCACTGGCTTGGGCGCTGTACCTCCTGGCGACCCACCGG
GAGGTGCAAATCAAGGCCTGCGCTGAGGCTCAAGCTGCCTATGCTATTGC
TGAGGACGAGGGCAAGGACCTGGGCTATGAGGCTATTGATCGTTTGACAT
ATCTTGACGCGGTTTTTACGGAGGTTTTGCGGCTTTACCCCTCCGTGCCT
AAGAACCCCAAATGCGTCTATCAGGACGATGTTCTGCCCGACGGTACTCC
TGTCCGAGCAGGCTCTTACGTCATGTATGTCCCGTATGTCATGGCGCGGT
TACCGGAGCTCTGGGGACCGGAGCCCGAGAAGTTTGATCCCGAGCGGCAT
TTGCAGGGACGCCACCGACCTTCTCCCTACCTGTGGCCGGCTTTCCAGGC
GGGACCTCGCACCTGCTTGGGGCAAAAGCTGGCCTACATGGAAGCAAAAG
CGGTGCTGTGTGCTTTGCTGGCGAACTTTGAGTTTTCCCGTTCGGCTTCG
GTGGCTACGCCGCGGCTAGTCCAGAACGCACTCACCACATCAATGGAAGG
TGAGGGGTTAGTGTTGGCCGTGAAGCGAATCAACTCCAGGGGAGGAGATG
AGCTGATGCTGAATCGAGCCATGAATGAGAAAGAAGTGCCGCAATAGGGT
TGAAAGAATAGGAAACATGCGTAAGATGACAAAGAGGGAAATTGGAGAAA
AAGTGATGGATACAGAGAAGAAAAGAGCCAGATGAGATGACGCTCTGCAC
AGGATCGATAAATATTAGCCTGGCCATAGTGACCTTAGATGTGGCTGGTT
GAAGAAGACAAGATCAGGAATCCAGAAGGCAAAAACGAAACAATCGAAAT
AATGTGACACAGTTTTCCTTAAACACGAAATAGTATATGAAGGAGAAAGG
GGGTGTGATACGTAAGCAACCATAGAATAAAAGACTATAGGCACGTCAAC
ACATTTCATCTTTTTTTAGACG
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protein sequence of NO17G02870.1

>NO17G02870.1-protein ID=NO17G02870.1-protein|Name=NO17G02870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=594bp
MATSATTAGLQPPKKSTEYMLPPSSKNNDNYNMTISLILNLLFLALVPLL
PVYIWILMHVPTRVVTALPGFVVASATLLLVLALAYDSFSGRAPGHVPSP
PSPIPLIGQSKELHGYRNRALEWLTMYSRRFGGKTWTFKVMFRPRVYVIL
SPENVEYILKTNFTNYGKGPMFRSRMKELLGEGIFNVDGSRWYEQRKISS
HLFTHRNFKQRMLNTINKDVHALVNIVGQAADKAKGNTSGAAEVNFSRLF
ARYTLDAIGEIAFGENIGALKGESVDFVTSFDYIQSFLNDLVLKPPGYAF
YCRHFTPEGKRYTECLATLNTYVRRMVATAKDETTSEELVARGDLLALFM
TRTDSDGKPFTEEYLRDIVVNMTIAGRDTTAYALAWALYLLATHREVQIK
ACAEAQAAYAIAEDEGKDLGYEAIDRLTYLDAVFTEVLRLYPSVPKNPKC
VYQDDVLPDGTPVRAGSYVMYVPYVMARLPELWGPEPEKFDPERHLQGRH
RPSPYLWPAFQAGPRTCLGQKLAYMEAKAVLCALLANFEFSRSASVATPR
LVQNALTTSMEGEGLVLAVKRINSRGGDELMLNRAMNEKEVPQ*
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mRNA from alignment at chr17:839329..841500+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02870.1 ID=NO17G02870.1|Name=NO17G02870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2172bp|location=Sequence derived from alignment at chr17:839329..841500+ (Nannochloropsis oceanica)
CCACCAACACTCTCTCCGAAAAGCCACCGACATTTTCGAAGCGTTGCACC
GTCTCTATCGATACGATGGCAACTTCAGCCACCACTGCTGGCCTCCAGCC
GCCTAAAAAGTCCACCGAGTATATGTTGCCGCCGTCGAGCAAGAACAACG
ACAATTACAACATGACTATATCGCTCATTCTCAACCTGCTCTTTCTCGCA
CTGGTCCCTTTGCTTCCTGTCTACATCTGGATCTTGATGCACGTGCCTAC
TCGCGTTGTGACCGCGCTCCCGGGTTTCGTCGTCGCCTCGGCTACTCTTT
TACTCGTGTTGGCCCTTGCTTATGACTCGTTCTCCGGTCGCGCTCCTGGC
CACGTCCCGTCCCCACCGTCACCAATACCTCTAATTGGCCAGTCAAAAGA
GCTTCACGGCTACCGCAACCGGGCGCTGGAGTGGCTTACCATGTACTCTC
GGCGCTTTGGGGGCAAGACGTGGACGTTCAAGGTCATGTTTCGTCCTCGC
GTTTATGTCATTTTGAGCCCGGAAAATGTGGAGTACATCCTCAAAACCAA
TTTTACAAACTACGGCAAGGGTCCTATGTTCCGGTCACGCATGAAGGAGC
TTCTTGGGGAAGGGATCTTCAACGTGGATGGATCACGGTGGTACGAGCAA
CGCAAGATATCGTCGCATCTCTTTACGCACCGTAATTTCAAGCAGCGCAT
GCTCAACACCATCAACAAAGACGTGCATGCGCTTGTGAATATTGTCGGAC
AAGCTGCAGATAAGGCCAAGGGCAACACCAGTGGGGCGGCCGAGGTCAAT
TTCTCGCGTCTCTTTGCGCGCTACACTCTCGACGCCATTGGCGAGATAGC
GTTTGGGGAAAATATTGGGGCATTGAAGGGCGAGAGTGTGGACTTTGTGA
CTTCATTTGACTACATCCAAAGCTTCCTAAACGATCTAGTGCTCAAGCCT
CCCGGGTACGCATTTTATTGCCGGCACTTCACTCCTGAAGGCAAGCGCTA
CACCGAATGCCTGGCCACGCTCAACACGTACGTCCGACGCATGGTGGCGA
CAGCTAAGGACGAGACGACGTCCGAGGAGCTTGTAGCCCGCGGCGATTTG
CTGGCACTCTTTATGACGCGTACTGACTCGGACGGCAAGCCTTTCACTGA
AGAATATCTACGAGACATTGTCGTGAACATGACCATTGCTGGGCGCGACA
CGACAGCATACGCACTGGCTTGGGCGCTGTACCTCCTGGCGACCCACCGG
GAGGTGCAAATCAAGGCCTGCGCTGAGGCTCAAGCTGCCTATGCTATTGC
TGAGGACGAGGGCAAGGACCTGGGCTATGAGGCTATTGATCGTTTGACAT
ATCTTGACGCGGTTTTTACGGAGGTTTTGCGGCTTTACCCCTCCGTGCCT
AAGAACCCCAAATGCGTCTATCAGGACGATGTTCTGCCCGACGGTACTCC
TGTCCGAGCAGGCTCTTACGTCATGTATGTCCCGTATGTCATGGCGCGGT
TACCGGAGCTCTGGGGACCGGAGCCCGAGAAGTTTGATCCCGAGCGGCAT
TTGCAGGGACGCCACCGACCTTCTCCCTACCTGTGGCCGGCTTTCCAGGC
GGGACCTCGCACCTGCTTGGGGCAAAAGCTGGCCTACATGGAAGCAAAAG
CGGTGCTGTGTGCTTTGCTGGCGAACTTTGAGTTTTCCCGTTCGGCTTCG
GTGGCTACGCCGCGGCTAGTCCAGAACGCACTCACCACATCAATGGAAGG
TGAGGGGTTAGTGTTGGCCGTGAAGCGAATCAACTCCAGGGGAGGAGATG
AGCTGATGCTGAATCGAGCCATGAATGAGAAAGAAGTGCCGCAATAGGGT
TGAAAGAATAGGAAACATGCGTAAGATGACAAAGAGGGAAATTGGAGAAA
AAGTGATGGATACAGAGAAGAAAAGAGCCAGATGAGATGACGCTCTGCAC
AGGATCGATAAATATTAGCCTGGCCATAGTGACCTTAGATGTGGCTGGTT
GAAGAAGACAAGATCAGGAATCCAGAAGGCAAAAACGAAACAATCGAAAT
AATGTGACACAGTTTTCCTTAAACACGAAATAGTATATGAAGGAGAAAGG
GGGTGTGATACGTAAGCAACCATAGAATAAAAGACTATAGGCACGTCAAC
ACATTTCATCTTTTTTTAGACG
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Coding sequence (CDS) from alignment at chr17:839329..841500+

>NO17G02870.1 ID=NO17G02870.1|Name=NO17G02870.1|organism=Nannochloropsis oceanica|type=CDS|length=1782bp|location=Sequence derived from alignment at chr17:839329..841500+ (Nannochloropsis oceanica)
ATGGCAACTTCAGCCACCACTGCTGGCCTCCAGCCGCCTAAAAAGTCCAC
CGAGTATATGTTGCCGCCGTCGAGCAAGAACAACGACAATTACAACATGA
CTATATCGCTCATTCTCAACCTGCTCTTTCTCGCACTGGTCCCTTTGCTT
CCTGTCTACATCTGGATCTTGATGCACGTGCCTACTCGCGTTGTGACCGC
GCTCCCGGGTTTCGTCGTCGCCTCGGCTACTCTTTTACTCGTGTTGGCCC
TTGCTTATGACTCGTTCTCCGGTCGCGCTCCTGGCCACGTCCCGTCCCCA
CCGTCACCAATACCTCTAATTGGCCAGTCAAAAGAGCTTCACGGCTACCG
CAACCGGGCGCTGGAGTGGCTTACCATGTACTCTCGGCGCTTTGGGGGCA
AGACGTGGACGTTCAAGGTCATGTTTCGTCCTCGCGTTTATGTCATTTTG
AGCCCGGAAAATGTGGAGTACATCCTCAAAACCAATTTTACAAACTACGG
CAAGGGTCCTATGTTCCGGTCACGCATGAAGGAGCTTCTTGGGGAAGGGA
TCTTCAACGTGGATGGATCACGGTGGTACGAGCAACGCAAGATATCGTCG
CATCTCTTTACGCACCGTAATTTCAAGCAGCGCATGCTCAACACCATCAA
CAAAGACGTGCATGCGCTTGTGAATATTGTCGGACAAGCTGCAGATAAGG
CCAAGGGCAACACCAGTGGGGCGGCCGAGGTCAATTTCTCGCGTCTCTTT
GCGCGCTACACTCTCGACGCCATTGGCGAGATAGCGTTTGGGGAAAATAT
TGGGGCATTGAAGGGCGAGAGTGTGGACTTTGTGACTTCATTTGACTACA
TCCAAAGCTTCCTAAACGATCTAGTGCTCAAGCCTCCCGGGTACGCATTT
TATTGCCGGCACTTCACTCCTGAAGGCAAGCGCTACACCGAATGCCTGGC
CACGCTCAACACGTACGTCCGACGCATGGTGGCGACAGCTAAGGACGAGA
CGACGTCCGAGGAGCTTGTAGCCCGCGGCGATTTGCTGGCACTCTTTATG
ACGCGTACTGACTCGGACGGCAAGCCTTTCACTGAAGAATATCTACGAGA
CATTGTCGTGAACATGACCATTGCTGGGCGCGACACGACAGCATACGCAC
TGGCTTGGGCGCTGTACCTCCTGGCGACCCACCGGGAGGTGCAAATCAAG
GCCTGCGCTGAGGCTCAAGCTGCCTATGCTATTGCTGAGGACGAGGGCAA
GGACCTGGGCTATGAGGCTATTGATCGTTTGACATATCTTGACGCGGTTT
TTACGGAGGTTTTGCGGCTTTACCCCTCCGTGCCTAAGAACCCCAAATGC
GTCTATCAGGACGATGTTCTGCCCGACGGTACTCCTGTCCGAGCAGGCTC
TTACGTCATGTATGTCCCGTATGTCATGGCGCGGTTACCGGAGCTCTGGG
GACCGGAGCCCGAGAAGTTTGATCCCGAGCGGCATTTGCAGGGACGCCAC
CGACCTTCTCCCTACCTGTGGCCGGCTTTCCAGGCGGGACCTCGCACCTG
CTTGGGGCAAAAGCTGGCCTACATGGAAGCAAAAGCGGTGCTGTGTGCTT
TGCTGGCGAACTTTGAGTTTTCCCGTTCGGCTTCGGTGGCTACGCCGCGG
CTAGTCCAGAACGCACTCACCACATCAATGGAAGGTGAGGGGTTAGTGTT
GGCCGTGAAGCGAATCAACTCCAGGGGAGGAGATGAGCTGATGCTGAATC
GAGCCATGAATGAGAAAGAAGTGCCGCAATAG
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Synonyms
Publications