NO17G02520.1, NO17G02520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02520.1
Unique NameNO17G02520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1068
Alignment locationchr17:741058..742591 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:741058..742591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G02520.1 vs.
Match: XP_005854797.1 (lipase family protein [Nannochloropsis gaditana CCMP526]; EKU21565.1 lipase family protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 423.3 bits (1087), Expect = 7.400e-115
Identity = 191/303 (63.04%), Postives = 230/303 (75.91%), Query Frame = 0 
Query:   14 LLLFFLLSLFSFSVALPLQPYSDTLARKAALFSSLAYGEPACIAANSIYNSTCQLPEFTILHTYLSPPRARDAFAYIGMDVKEKLIVVAFKGSNDTEDYIIDIAGPVRYRFPCSIGGVELGQTHHGFCAYYRSLAVLGLAWEVTRMWEEKKGEYTVLVTGHSLGGAAATLCAADLGKRFGLSTLLYTFGEPRVGDADFASSLASHSLGSYRVVHASDCVPHLPPCCGGLRKEQCHPKPDCPFHHGQEVWYDNRMGEGAPFVMCPGDEDEDACTNGSVTSVSDHKYYFGERLGTWCCFPPLPPD 317
            LLL  ++ L     +  ++PYS+ LAR+AA+FSS+AYG+P  ++ N  YNS+CQLP FT+LHTY S P   DAF YIG+D +EKL+VVAFKGSNDTEDYI D+ G + Y F C I GV+LG THHGFCA+Y SL  LGLA EV  +      EYTVLVTGHSLGG  A+LCA DLGKR  +S+LLYTFGEPR GD  FA+++A ++ GSYR+VHASDCVPHLPPCCGG+    C    DCPFHHGQE+WYD+ M  GA +V CPGDEDED C+NGS++SV DH YYFGERLGTWCCFPP P +
Sbjct:   15 LLLMSMVCLCRLPYSFAVEPYSEDLARQAAVFSSIAYGDPFLVSQNKFYNSSCQLPGFTVLHTYQSQPLDHDAFGYIGVDKEEKLVVVAFKGSNDTEDYITDLIGSLHYHFSCVIEGVDLGHTHHGFCAFYTSLVTLGLAEEVAALAARMGEEYTVLVTGHSLGGGVASLCAVDLGKRLNVSSLLYTFGEPRAGDVGFATAVAEYTRGSYRLVHASDCVPHLPPCCGGVDGGHCAEVADCPFHHGQEIWYDDDMSVGAQYVACPGDEDEDVCSNGSISSVEDHHYYFGERLGTWCCFPPPPSE 317
The following BLAST results are available for this feature:
BLAST of NO17G02520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854797.17.400e-11563.04lipase family protein [Nannochloropsis gaditana CC... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02520NO17G02520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02520.1NO17G02520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02520.1.cds1NO17G02520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02520.1.cds2NO17G02520.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02520.1.cds3NO17G02520.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02520.1.cds4NO17G02520.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02520.1 ID=NO17G02520.1|Name=NO17G02520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1068bp
ATGCATCAACTTCTACCGATACGTAGCCAGCACCGTCACCTCCTCCTCTT
CTTCCTCCTTTCCCTCTTCTCCTTCTCAGTTGCCCTCCCCCTTCAGCCCT
ATTCTGACACCCTTGCCCGGAAGGCCGCCCTTTTCTCTTCTCTCGCCTAT
GGAGAACCTGCCTGTATCGCCGCCAACAGCATATACAACAGCACGTGTCA
ACTCCCTGAGTTCACCATTCTCCACACCTATCTCTCCCCGCCCCGTGCCC
GCGACGCCTTCGCGTACATAGGGATGGACGTAAAAGAGAAGCTCATCGTA
GTGGCGTTCAAGGGGAGCAACGACACGGAGGACTACATCATTGACATTGC
TGGGCCGGTCCGATATCGTTTCCCTTGCTCGATTGGGGGCGTGGAGCTGG
GACAGACCCACCACGGATTTTGTGCGTACTATCGCTCCTTGGCCGTTTTG
GGCTTAGCGTGGGAGGTGACAAGGATGTGGGAGGAGAAGAAAGGAGAGTA
TACCGTGTTGGTGACCGGCCATTCCTTGGGAGGCGCAGCTGCCACCCTGT
GTGCAGCTGACCTGGGGAAACGTTTCGGGCTTTCGACCCTCCTTTATACA
TTTGGTGAGCCCCGGGTGGGCGATGCTGATTTTGCGTCTTCATTGGCCTC
ACATTCGTTGGGGAGTTACCGGGTCGTCCACGCGTCGGATTGTGTCCCGC
ATTTGCCGCCTTGCTGTGGTGGGCTTCGGAAAGAGCAATGTCACCCTAAG
CCAGATTGTCCTTTTCACCACGGGCAGGAAGTGTGGTATGACAACCGTAT
GGGGGAAGGGGCTCCTTTCGTGATGTGTCCGGGGGATGAGGATGAAGACG
CCTGCACCAATGGCTCCGTGACAAGCGTGTCAGACCACAAGTACTATTTC
GGCGAGCGCCTGGGGACGTGGTGTTGCTTTCCCCCGCTTCCGCCAGATTT
CTATAGCACCAGCAGTACTAGCAGTGGCAGTGACAGCAGCAGTAGAAGCG
TCTCTTTAAACGGGTTGGAGATGGAGGAGAAGGCGGCGGTGTCGATGCGC
GTGGCAATGAAGCAATAG
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protein sequence of NO17G02520.1

>NO17G02520.1-protein ID=NO17G02520.1-protein|Name=NO17G02520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MHQLLPIRSQHRHLLLFFLLSLFSFSVALPLQPYSDTLARKAALFSSLAY
GEPACIAANSIYNSTCQLPEFTILHTYLSPPRARDAFAYIGMDVKEKLIV
VAFKGSNDTEDYIIDIAGPVRYRFPCSIGGVELGQTHHGFCAYYRSLAVL
GLAWEVTRMWEEKKGEYTVLVTGHSLGGAAATLCAADLGKRFGLSTLLYT
FGEPRVGDADFASSLASHSLGSYRVVHASDCVPHLPPCCGGLRKEQCHPK
PDCPFHHGQEVWYDNRMGEGAPFVMCPGDEDEDACTNGSVTSVSDHKYYF
GERLGTWCCFPPLPPDFYSTSSTSSGSDSSSRSVSLNGLEMEEKAAVSMR
VAMKQ*
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mRNA from alignment at chr17:741058..742591-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02520.1 ID=NO17G02520.1|Name=NO17G02520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1534bp|location=Sequence derived from alignment at chr17:741058..742591- (Nannochloropsis oceanica)
ATGCATCAACTTCTACCGATACGTAGCCAGCACCGTCACCTCCTCCTCTT
CTTCCTCCTTTCCCTCTTCTCCTTCTCAGTTGCCCTCCCCCTTCAGCCCT
ATTCTGACACCCTTGCCCGGAAGGCCGCCCTTTTCTCTTCTCTCGCCTAT
GGAGAACCTGCCTGTATCGCCGCCAACAGCATATACAACAGCACGTGTCA
ACTCCCTGAGTTCACCATTCTCCACACCTATCTCTCCCCGCCCCGTGCCC
GCGACGCCTTCGCGTACATAGGGATGGACGTAAAAGAGAAGCTCATCGTA
GTGGCGTTCAAGGGGAGCAACGACACGGAGGACTACATCATTGACATTGC
TGGGCCGGTCCGATATCGTTTCCCTTGCTCGATTGGGGGCGTGGAGCTGG
GACAGACCCACCACGGATTTTGTGCGTACTATCGCTCCTTGGCCGTTTTG
GGCTTAGCGTGGGAGGTGACAAGGATGTGGGAGGAGAAGAAAGGAGAGTA
TACCGTGTTGGTGACCGGCCATTCCTTGGGTGAGTGCAAGGAAGGGAGGG
CGTATAAATGGCATCTGTTGCTGGTCATGCTGGGCCGTTGCGAGAGCCAT
GTCTGCCGTGTAGTAGGACGTCGCTGTAACTTCACTCTCCCTCCTTCCCT
CCCTCCCTCTGTCCCTGCCTCCGTCCTTCCCTACCTACTACCTCAGGAGG
CGCAGCTGCCACCCTGTGTGCAGCTGACCTGGGGAAACGTTTCGGGCTTT
CGACCCTCCTTTATACATTTGGTGAGCCCCGGGTGGGCGATGCTGATTTT
GCGTCTTCATTGGCCTCACATTCGTTGGGGAGTTACCGGGTCGTCCACGC
GTCGGATTGTGTCCCGCATTTGCCGCCTTGCTGTGGTGGGCTTCGGAAAG
GTGAGAGAGGGAGGGAGGGAGGGGAAAAGGGGTTGCCGCGTGAGCACTCG
AGCAAGATGCCGACGTTGAGGGCTTCCGAATCTCATTCTCAACTTCCCTC
CCTACCCTACTCTCTTCCCTTAAGAGCAATGTCACCCTAAGCCAGATTGT
CCTTTTCACCACGGGCAGGAAGTGTGGTATGACAACCGTATGGGGGAAGG
GGCTCCTTTCGTGATGTGTCCGGGGGATGAGGTATGCAGGGAGGGAGAGA
GGGAGGGATGGAGGGGAGGGGAAGGGAAGCTACGGGTGCTTTCCTGAGCA
AGCGGTACGAGGAAAATGAGACGCCGCTTTTTTCAACATGGTAACAATCC
CCATCTTTCTTCCTCCCTTTCTCCTTTCTTACTTCCTCCTTCCACCATTT
ATATAGGATGAAGACGCCTGCACCAATGGCTCCGTGACAAGCGTGTCAGA
CCACAAGTACTATTTCGGCGAGCGCCTGGGGACGTGGTGTTGCTTTCCCC
CGCTTCCGCCAGATTTCTATAGCACCAGCAGTACTAGCAGTGGCAGTGAC
AGCAGCAGTAGAAGCGTCTCTTTAAACGGGTTGGAGATGGAGGAGAAGGC
GGCGGTGTCGATGCGCGTGGCAATGAAGCAATAG
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Coding sequence (CDS) from alignment at chr17:741058..742591-

>NO17G02520.1 ID=NO17G02520.1|Name=NO17G02520.1|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at chr17:741058..742591- (Nannochloropsis oceanica)
ATGCATCAACTTCTACCGATACGTAGCCAGCACCGTCACCTCCTCCTCTT
CTTCCTCCTTTCCCTCTTCTCCTTCTCAGTTGCCCTCCCCCTTCAGCCCT
ATTCTGACACCCTTGCCCGGAAGGCCGCCCTTTTCTCTTCTCTCGCCTAT
GGAGAACCTGCCTGTATCGCCGCCAACAGCATATACAACAGCACGTGTCA
ACTCCCTGAGTTCACCATTCTCCACACCTATCTCTCCCCGCCCCGTGCCC
GCGACGCCTTCGCGTACATAGGGATGGACGTAAAAGAGAAGCTCATCGTA
GTGGCGTTCAAGGGGAGCAACGACACGGAGGACTACATCATTGACATTGC
TGGGCCGGTCCGATATCGTTTCCCTTGCTCGATTGGGGGCGTGGAGCTGG
GACAGACCCACCACGGATTTTGTGCGTACTATCGCTCCTTGGCCGTTTTG
GGCTTAGCGTGGGAGGTGACAAGGATGTGGGAGGAGAAGAAAGGAGAGTA
TACCGTGTTGGTGACCGGCCATTCCTTGGGAGGCGCAGCTGCCACCCTGT
GTGCAGCTGACCTGGGGAAACGTTTCGGGCTTTCGACCCTCCTTTATACA
TTTGGTGAGCCCCGGGTGGGCGATGCTGATTTTGCGTCTTCATTGGCCTC
ACATTCGTTGGGGAGTTACCGGGTCGTCCACGCGTCGGATTGTGTCCCGC
ATTTGCCGCCTTGCTGTGGTGGGCTTCGGAAAGAGCAATGTCACCCTAAG
CCAGATTGTCCTTTTCACCACGGGCAGGAAGTGTGGTATGACAACCGTAT
GGGGGAAGGGGCTCCTTTCGTGATGTGTCCGGGGGATGAGGATGAAGACG
CCTGCACCAATGGCTCCGTGACAAGCGTGTCAGACCACAAGTACTATTTC
GGCGAGCGCCTGGGGACGTGGTGTTGCTTTCCCCCGCTTCCGCCAGATTT
CTATAGCACCAGCAGTACTAGCAGTGGCAGTGACAGCAGCAGTAGAAGCG
TCTCTTTAAACGGGTTGGAGATGGAGGAGAAGGCGGCGGTGTCGATGCGC
GTGGCAATGAAGCAATAG
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Synonyms
Publications