Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr17 genome chr17:717651..722791 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G02440.2 vs.
Match: EWM24166.1 (kazal-type serine protease inhibitor domain protein [Nannochloropsis gaditana])
HSP 1 Score: 279.3 bits (713), Expect = 3.600e-71
Identity = 187/478 (39.12%), Postives = 237/478 (49.58%), Query Frame = 0
Query: 7 WLLILLLPL-LRGAQAQPSCRTKADCSKGQFCRFPDGECSAPGVCAEIPLFCTMEYQPVCGCDGQTYGNRCGAFGAGMSVRIDDECPPPPSSSSSTSSSSSSLPPPTEPTSGQKEEEEAGRQGGGH---RHRRDLLNVDDWVSGEDALMLKVRKSSRSSSSDNGVQNQA----PAGAGAGAAGAEVLSSQEPPRPSARSCGSRGLPACLEGEWCDFTDGTCGETDKGGVCRELQLACTRIYMPVCGCDGSTHANACVARSKEVSIRHEGPCSS----PSPSSSEGMDSGAGVSTTAPA----GAAVAAAGAEVLSSQEPPRPSARSCGSRGLPACLEGEWCDFTDGTCGETDKGGVCRELQLACTRIYMPVCGCDGSTHANACVARSKEVSIRHEGPCSSPSPSSSEGMDWGAGVSTTAPAGAAVAAAGAEVLSSQEPPRPSARSCGSRGLPACLEGEWCDFTDGTCGETDKGGVCRE 469
WLL L L L L+ AQ C+ DC++ QFC FPDG C G C ++P CTM+Y+PVCGCDG YGNRC A A MSVR+ EC + SS LPP +G A R+ G R RRDLL+V+ W ++++ L + ++S D G + + PAG AG E +E + CGSRGL +C EG WC++ DGTCG+ D+GG CR L++AC RIY PVCGCDG THAN CVA + VS+RH GPC P S + G P+ G G ++ R+CG AC G C + GTCG D+ G+C L C IY PVCGCDG T+AN C A + VSI +GPCS P A AAVAAA + +E P P + LP+ +G GE D GGV E
Sbjct: 93 WLLALFLSLALQNVLAQSRCQLNKDCAEEQFCLFPDGACEGRGTCQDVPSLCTMDYRPVCGCDGTIYGNRCEALSASMSVRMAGEC-------GAGEEDSSLLPPQDVDEAGVPGRVSAKRREGAMGRGRTRRDLLSVEGWTLSKESVRLDT--DAAAASGDLGEEGRGTFSLPAGRPPTWAGEE---DEEEAAEGGQRCGSRGLLSCPEGAWCEYVDGTCGDGDRGGRCRPLRVACPRIYAPVCGCDGRTHANTCVAGAARVSVRHAGPCERVDAWPPGRISPDLTEVTGQEEERPSALRPGGLPGLGGRRDGGAEGGQDGDVRACGGLEGLACPVGHACIYPPGTCGAADEMGICLPAPLVCALIYQPVCGCDGHTYANDCHAHAASVSIVAQGPCSPPD-----------------QAPAAVAAATTPAV--EEAPFPPS-------LPSSPVTPATSVEEGRLGEMD-GGVSSE 531
The following BLAST results are available for this feature:
BLAST of NO17G02440.2 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 4500 Expect = 3.60e-71 / Id = 39.12 Sequence EWM24166.1
Match Name E-value Identity Description
EWM24166.1 3.600e-71 39.12 kazal-type serine protease inhibitor domain protei... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO17G02440.2 ID=NO17G02440.2|Name=NO17G02440.2|organism=Nannochloropsis oceanica|type=mRNA|length=4657bp back to top protein sequence of NO17G02440.2
>NO17G02440.2-protein ID=NO17G02440.2-protein|Name=NO17G02440.2|organism=Nannochloropsis oceanica|type=polypeptide|length=748bp back to top mRNA from alignment at chr17:717651..722791+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02440.2 ID=NO17G02440.2|Name=NO17G02440.2|organism=Nannochloropsis oceanica|type=mRNA|length=5141bp|location=Sequence derived from alignment at chr17:717651..722791+ (Nannochloropsis oceanica)ATGGCCTGGTTTAAGCCATGGCTTCTGATCCTCCTATTG
CCTCTTTTGCGAGGCGCCCAGGCACAACCCAG GTATGTACGTCCTTGTAG
AACGAGGGGAGAGAAGGAGAGCCTTGCCGACTAAACTGTATGTCCCTCCC
TTCATCTTCACTCTTACTCTTCCGATGCTTTGTGCAATGATGTTTGGGTC
TGTTGCAAGACGAGAGTGGCGCTAAATGAGGGCCCTCCTGCAGGAGGGCG
ATCCATCCACCCCTCCATTATTTCCTCCCTCTGTCGTCTCCTCTCACATC
CGCGTACCCACCCAACAACAATTTAACACACAAACACTCCTGAAGCTGTC
GTACCAAGGCGGACTGTAGCAAGGGTCAATTTTGTCGCTTTCCTGATGGC
GAGTGCTCGGCGCCGGGCGTGTGCGCGGAGATCCCTCTTTT GTACGTTGT
AGGGAGGGAGGAATGGGGGAAGAGAGACCAACATGGCTTGGGTGGATGGA
GGAGAAATATAGACAACGAAGACGGCGGGGTTTATGTGCACACAGCTATC
CTGTCTGTTTGCGAGCCACCTCGAGTCTGTGCTCTAGGAAAGAAACGAGC
GTCTCCTCCCTTGCCTGACCTCTCTCCCCTCCTCCCTCCCTCCCTCCCTC
TCTTCCCTACAGTTGTACAATGGAATACCAACCTGTCTGCGGGTGCGACG
GTCAAACCTACGGCAACCGCTGCGGGGCTTTTGGTGCGGGTATGTCCGTG
CGCATCGACGACGAATGTCCCCCTCCCCCCTCCTCTTCCTCCTCTACCTC
CTCCTCTTCTTCCTCCCTCCCTCCCCCCACGGAGCCTACATCGGGCCAAA
AGGAGGAGGAGGAGGCAGGGAGGCAGGGAGGGGGGCATCGGCACAGGCGA
GACTTACTAAACGTAGATGACTGGGTGTCAGGGGAGGACGCGCTCATGCT
GAAGGTGAGGAAATCCAGCAGAAGCAGCAGCAGCGACAACGGTGTGCAGA
ACCAGGCACCAGCCGGGGCAGGCGCAGGAGCAGCAGGAGCAGAAGTTCTT
TCCTCCCAAGAGCCTCCAAGGCCGTCGGCAAGGAGTTGTGGATCACGGGG
ACTCCCTGCGTGCTTGGAGGGGGAATGGTGTGATTTTACGGACGGGACTT
GCGGGGAGACAGACAAGGGAGGGGTGTGCCGCGAGCTCCAATTGGCATGT
ACCCGAATTTACATGCCCGTGTGTGGCTGTGATGGGTCGACACATGCCAA
TGCCTGTGTAGCACGATCGAAGGAGGTAAGCATCCGCCACGAAGGGCCTT
GCTCATCCCCCTCTCCTTCCTCATCGGAAGGGATGGACTCGGGGGCCGGA
GTGTCCACAACAGCGCCAGCAGGAGCAGCAGTGGCAGCAGCAGGAGCAGA
AGTTCTTTCCTCCCAAGAGCCTCCAAGGCCGTCGGCAAGGAGTTGTGGAT
CACGGGGACTTCCTGCGTGCTTGGAGGGGGAATGGTGTGATTTTACGGAC
GGGACTTGCGGGGAGACAGACAAGGGAGGGGTGTGCCGCGAGCTCCAATT
GGCATGTACCCGAATTTACATGCCCGTGTGTGGCTGTGATGGGTCGACAC
ATGCCAATGCCTGTGTAGCACGATCGAAGGAGGTAAGCATCCGCCACGAA
GGGCCTTGCTCATCCCCCTCTCCTTCCTCATCGGAAGGGATGGACTGGGG
GGCCGGAGTGTCCACAACAGCGCCAGCAGGAGCAGCAGTGGCAGCAGCAG
GAGCAGAAGTTCTTTCCTCCCAAGAGCCTCCAAGGCCGTCGGCAAGGAGT
TGTGGATCACGGGGACTTCCTGCGTGCTTGGAGGGGGAATGGTGTGATTT
TACGGACGGGACTTGCGGGGAGACAGACAAGGGAGGGGTGTGCCGCGAGC
TCCAATTGGCATGTACCCGAATTTACATGCCCGTGTGTGGCTGTGATGGG
TCGACACATGCCAATGCCTGTGTAGCACGATCGAAGGAGGTAAGCATCCG
CCACGAAGGGCCTTGCTCATCCCCCTCTCCTTCCTCATCGGAAGGGATGG
ACTCGGGGGCCGGAGTGTCCACAACAGCGCCAGCAGGAGCAGCAGTGGCA
GCAGCAGTAGAAACAGCGGCAGTAGAGAAGGAGGGTGAGGAAGAGATAAA
ACCCAGCTCCTTTCCACCTCCGGCCGTCTCCAGCCCGGACGTTCCCCCAC
CAGATGTTCCTCCCTTCTCCCCCCAAACCCCCCCCACCCCCCGTGCCTCC
TACCCATCCCTCCGCGACGTCTGGCAAGCCCTCGGAGGGCGAGGAAGAAG
CAGCGAGAGAGGATCGCCCTGTGGGGGAATGATGGGTGCGTCTTGTCCCA
CCGGCCAAGTATGCATCTTCCCCCGGGGAACATGCGGTGCGGCCGACGAA
ATGGGGACGTGTCTTTCCCCTCCACTTGTTTGTGCTTTGATTTACCAGCC
CGTTTGTGGGTGTAACGGACGGACGTTTTCCAACGAGTGTTCCGCGCATG
CCTCGGCTGTTTCTGTGGCGGCTGAAGGGTCCTGTCTTGCTCCCATCCCT
GATACTGATAGTGATGCTGCTGGTACTGCTACTGCTGCTGAGGATGGTGC
CGGCATGTTGAATCATAATGGCGTCAGCACAATTAATACCGCAGCCATGG
CGGCAGCAGGGCCTGCAGCGGCGCAGAAGAATGTAGAGGAAGATCACCTT
CGGGGAGGGCAAGCTCGTGGAGGAGCGAGGAGGGGTTAG back to top Coding sequence (CDS) from alignment at chr17:717651..722791+
>NO17G02440.2 ID=NO17G02440.2|Name=NO17G02440.2|organism=Nannochloropsis oceanica|type=CDS|length=2244bp|location=Sequence derived from alignment at chr17:717651..722791+ (Nannochloropsis oceanica) back to top