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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr17 | genome | chr17:694784..698235 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G02360.1 vs.
Match: EWM24177.1 (Protein of unknown function DUF1275 [Nannochloropsis gaditana]) HSP 1 Score: 283.9 bits (725), Expect = 1.300e-72 Identity = 172/293 (58.70%), Postives = 191/293 (65.19%), Query Frame = 0
Query: 1 MPDRVPLVHRHRKPHHFHFSDDVEEEEDATRQQHQHQQHQHQQHQHQHPSPHSRSHHQPDSSPSFSSPFAPSSAAPALGGPSSSRTIARPKHPAAASLQRRPTPLLSHYQQQHASSSSTPSATPKALAH-KPPHNATTNTNKRLGQGGKPAPPLPPHLSSSWPWVLFGSLTLTFNAGYINGITLHNLHHMASAHVTGMVARMSNLIAIREFGEFSAYFVAYSCFILGACMGGLLISHETFYLGRNYARALFLTAAIQGVALLIEKEWDSSVYFVYACCLAMGLQNSLTSKYSG 293
MPDRVPLVHRHR P+HFH+ D+ EE Q Q +H H S S H S P G S TI R KHPAAA+LQ RPT ++H H S S TP + P +L K PH K+ G KP+PP PHL+SSWPWVLFGSLTLT NAGYIN ITLHNLH + SAHVTG+VAR SNL A ++ S Y VAY CF+ GACMGGLLISHETFYLGRNYARALFLTAAIQGVAL+IE WD SVYF+YACCLAMGLQNSLTSKY G
Sbjct: 52 MPDRVPLVHRHRTPYHFHYEDEDEERRIPPSQG----QEGSDPFEHTHIGSSSSSSH---------------SDRPPSRGLSPPLTILRAKHPAAAALQHRPTTTVAH---GHRSPSPTPKSAPPSLPPPKSPHG------KKPATGNKPSPP--PHLTSSWPWVLFGSLTLTINAGYINSITLHNLHGIPSAHVTGIVARASNLFAEADWSRMSLYVVAYCCFVSGACMGGLLISHETFYLGRNYARALFLTAAIQGVALVIESHWDHSVYFIYACCLAMGLQNSLTSKYRG 314
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G02360.1 ID=NO17G02360.1|Name=NO17G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=2699bp ACAGACCAAGTAACTCGCAAAAATCATCCCTCTGGGCGTCTTGTTGTTCC TTGCTTATCCGCCTTCCTGGCGCCAGGCACCTGTCCAAGGCACATTTTTG GGAACCTACCCTTCCTTTTCCCTCAACCCCGGAGCTACATAAATGCGGAA TGCCCGATCGCGTTCCACTTGTGCACCGTCATAGAAAGCCACACCATTTC CACTTTTCCGACGACGTCGAGGAGGAGGAAGACGCCACGAGACAGCAGCA CCAGCATCAGCAGCACCAGCATCAGCAGCACCAGCACCAACATCCTTCTC CCCACAGCCGCTCTCACCACCAGCCCGACTCATCGCCCTCCTTCTCTTCC CCATTCGCACCCTCGTCCGCGGCCCCTGCTCTCGGCGGCCCTTCCTCTTC ACGCACCATTGCTCGCCCCAAGCATCCCGCCGCTGCCTCCCTGCAGCGGC GACCTACCCCTCTCCTCTCCCATTACCAGCAGCAACATGCCTCCTCCTCC TCTACGCCCTCAGCCACCCCTAAGGCGTTAGCACATAAACCCCCGCACAA TGCCACCACCAACACGAACAAACGGCTAGGTCAGGGGGGGAAACCCGCTC CTCCCCTCCCTCCTCACCTCTCCTCGTCGTGGCCCTGGGTATTGTTTGGC TCGTTAACCTTGACCTTTAATGCCGGGTATATCAATGGGATTACCCTGCA CAACCTGCATCACATGGCGTCGGCCCACGTGACAGGGATGGTGGCCCGCA TGAGCAACCTGATTGCCATCCGTGAGTTCGGCGAGTTCTCAGCCTATTTC GTCGCCTACAGCTGCTTCATTCTGGGAGCCTGCATGGGAGGGCTGCTCAT CTCGCACGAGACATTCTACCTGGGACGAAACTACGCGCGGGCCCTCTTTC TGACTGCTGCCATCCAGGGTGTCGCTCTCCTGATCGAAAAAGAGTGGGAT TCCTCCGTCTACTTCGTCTATGCCTGCTGCCTGGCCATGGGCCTGCAGAA CTCCCTGACAAGTAAATACAGTGGCTCCGTCGTTCGCACCACTCACCTGA CGGGCGCCAGTACCGACCTGGGCATTGCTCTGGGGCACATCATGAAGGGT CGCTCGGAAGAGTGGTGGAAGGTCAAGCTGCACGGCATCGCTATCTTTGG GTTCTTTTGTGGTGGGGTTGCCGGGCATTTCGCCTTTGAGACCTTCCAAC ACGGGGCCCTGCTCGTCAATGTCTGCGTCACCACCACATGCGCCTTAATC CACACCCTATACGTCGCATACCACGAGCGCCTCTCCCCTCTCTCCGTCCT TGAATCCAAGTCGGACATCCGCCTCCATCGTCACCGAGTCGGGCCCTCCC CTCGATATCACACCACCCCCCGCGGTCGACACCCCCGCCACCATTGGGCT GGTAACTCCCCCACCCCCCGTACACACGGCCAATTTTCGTCTGGCTTGCC TCACACGCCTCCAGCACGAGGGAGGGAGGGAGGGAGTGATGGAGGGTTCT CGCGTCAGTCTTCCTTTGGCCTTTCGTCTTCATCCCTAAGCGCGCTAGAG AAGCAGCAGCAGCAGCAGCATCATCTGCAGAATGGAGCGTTCGAGTTGTT GGACCTGAGTGGACAAGGGAGGGATGGGAGGAGGGAGGGAGGGAAGGAGG GAGGAAGGGAAGGAGTGTCGATTATGCCGCCTGGATTTGGCAGAAGGAAG CAGGAAGAGGGGGAGGAGGAGGGGGTGAAGGATGGAGAGAAGGAAGGGGA TAACACGCATGTTACTGCCCCCTTTTCCTCCAGAATGGTGCAGATAGTGG TGGGTGATCAGCAGAAGAAGGAGGAGGGGGAGGGGAAAGAGGAGGAGAAG GAAAAGAGGAAGACGGAGAATGAGGAGGAGGGAGGGGGGAAAGAGGAGGA GGAGAAAGAGAAGAGGAAGACGGAGGAGGAGGAGGAGGCGGAGAGAGAGG AGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGACATAGAG CTACCGCCGGAAGATAGGGAATGGAATGACGGCGAGGGTTATGCGGAGGG GGACGTGGCACACCAGGTGCTGATGGAGGAAGAGGAGGTGGAGGCCGAGG CCCTTGAACGGAACCGGGAATTTATCAGGCTAGCGTCTTTGTCGGAGAGT GAGGAGGGGGGGGGAATAGGGGAGGAGGGAGACGAAGGGCGTTTGGAGGA GGGGAATCGATAGGAGGGGGGGAAGCGATAGGAGGGGGAGAAGGAGGGAG GGGGGGTCAGAGAGAGGGAGGGACGGAGGCAGGGACCGAGGAAGGGTTGT ACATACGTTGACGGGTAGGGATAATATATGAGTCCATTTGAAATTAGAGA GAAGGAGGACGAGGAGGAAGAGAAGAAGAAGAAGAAGAAGAACAAGAACA AGAACAAGAACAAGAACAAAAAGAGGGACAAGTGGAGGGTAAGAATAGAA GGACGGAAGAAGGCACAGGCAGGTGTCACAAGCGGAGGAAAAGGGATAAT CACAGTATCTTTGATTCACTGAAGGGGGGAGGAGTCACCCAGCGAGAGGA ATAGACATAGATGTAGGAGACAAAGACAAACAGAGGCAGAGACAGTGACA GACAGAGAAGTGATGATGATGATGACTTGTGTTGTTGACGAGGCAAGACG ACAAACAACGACAAATGAAGAATATTGCACTGCAAGAATTATTCTCGCT back to topprotein sequence of NO17G02360.1 >NO17G02360.1-protein ID=NO17G02360.1-protein|Name=NO17G02360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=688bp MPDRVPLVHRHRKPHHFHFSDDVEEEEDATRQQHQHQQHQHQQHQHQHPS PHSRSHHQPDSSPSFSSPFAPSSAAPALGGPSSSRTIARPKHPAAASLQR RPTPLLSHYQQQHASSSSTPSATPKALAHKPPHNATTNTNKRLGQGGKPA PPLPPHLSSSWPWVLFGSLTLTFNAGYINGITLHNLHHMASAHVTGMVAR MSNLIAIREFGEFSAYFVAYSCFILGACMGGLLISHETFYLGRNYARALF LTAAIQGVALLIEKEWDSSVYFVYACCLAMGLQNSLTSKYSGSVVRTTHL TGASTDLGIALGHIMKGRSEEWWKVKLHGIAIFGFFCGGVAGHFAFETFQ HGALLVNVCVTTTCALIHTLYVAYHERLSPLSVLESKSDIRLHRHRVGPS PRYHTTPRGRHPRHHWAGNSPTPRTHGQFSSGLPHTPPARGREGGSDGGF SRQSSFGLSSSSLSALEKQQQQQHHLQNGAFELLDLSGQGRDGRREGGKE GGREGVSIMPPGFGRRKQEEGEEEGVKDGEKEGDNTHVTAPFSSRMVQIV VGDQQKKEEGEGKEEEKEKRKTENEEEGGGKEEEEKEKRKTEEEEEAERE EEEEEEEEEEEEEEDIELPPEDREWNDGEGYAEGDVAHQVLMEEEEVEAE ALERNREFIRLASLSESEEGGGIGEEGDEGRLEEGNR* back to topmRNA from alignment at chr17:694784..698235+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G02360.1 ID=NO17G02360.1|Name=NO17G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=3452bp|location=Sequence derived from alignment at chr17:694784..698235+ (Nannochloropsis oceanica) ACAGACCAAGTAACTCGCAAAAATCATCCCTCTGGGCGTCTTGTTGTTCC
TTGCTTATCCGCCTTCCTGGCGCCAGGCACCTGTCCAAGGCACATTTTTG
GGAACCTACCCTTCCTTTTCCCTCAACCCCGGAGCTACATAAATGCGGAA
TGCCCGATCGCGTTCCACTTGTGCACCGTCATAGAAAGCCACACCATTTC
CACTTTTCCGACGACGTCGAGGAGGAGGAAGACGCCACGAGACAGCAGCA
CCAGCATCAGCAGCACCAGCATCAGCAGCACCAGCACCAACATCCTTCTC
CCCACAGCCGCTCTCACCACCAGCCCGACTCATCGCCCTCCTTCTCTTCC
CCATTCGCACCCTCGTCCGCGGCCCCTGCTCTCGGCGGCCCTTCCTCTTC
ACGCACCATTGCTCGCCCCAAGCATCCCGCCGCTGCCTCCCTGCAGCGGC
GACCTACCCCTCTCCTCTCCCATTACCAGCAGCAACATGCCTCCTCCTCC
TCTACGCCCTCAGCCACCCCTAAGGCGTTAGCACATAAACCCCCGCACAA
TGCCACCACCAACACGAACAAACGGCTAGGTCAGGGGGGGAAACCCGCTC
CTCCCCTCCCTCCTCACCTCTCCTCGTCGTGGCCCTGGGTATTGTTTGGC
TCGTTAACCTTGACCTTTAATGCCGGGTATATCAATGGGATTACCCTGCA
CAACCTGCATCACATGGCGTCGGCCCACGTGACAGGGATGGTGGCCCGCA
TGAGCAACCTGATTGCCATCCGTGAGTTCGGCGAGTTCTCAGCCTATTTC
GTCGCCTACAGCTGCTTCATTCTGGGAGCCTGCATGGGAGGGCTGCTCAT
CTCGCACGAGACATTCTACCTGGTACGTTCGCGCATTTTTTCCCTATCTC
CTTCCCTTCTTCCCTTTCTCTCCTCGTCCCCTTCCTCTGTCCCATCCATC
CCTTCCCTCCACCCCACCCTTCCCCTCCCTCCCTCCCTCCTCCATCCCTT
CCCTTCACCCCACCCTTCCCTCCCTACCTCCCTCCATCTTCCCCCCATCC
TTCTTCGGCAGGGACGAAACTACGCGCGGGCCCTCTTTCTGACTGCTGCC
ATCCAGGGTGTCGCTCTCCTGATCGAAAAAGAGTGGGATTCCTCCGTCTA
CTTCGTCTATGCCTGCTGCCTGGCCATGGGCCTGCAGAACTCCCTGACAA
GTAAATACAGGTAGGGACATGGCACCCCTCCCTCCCTCCCTCCCTCCCCC
CTCCCTCTGTCTACTTCGCCTATGCCTGCTGTCTGGCTACAGAGCCGCAG
GATTCCCAGCCAAGCAAATCCCTGTGGAAGCGTGTGTCTCCCTCACCACC
CCCTTTCTCTTTCTCTCTCTTTCGTCTTGCCCCTTTCCCAACGAACGAGA
CCCTCACCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCCAGTGGCTCCGTC
GTTCGCACCACTCACCTGACGGGCGCCAGTACCGACCTGGGCATTGCTCT
GGGGCACATCATGAAGGGTCGCTCGGAAGAGTGGTGGAAGGTCAAGCTGC
ACGGCATCGCTATCTTTGGGTTCTTTTGTGGTGGGGTTGCCGGGCATTTC
GCCTTTGAGGTAGAAGAAGCAAGCCTTCCCTCCCTCCCTCCCTCCCTTTC
CTCCGGTCGCTGTGTGTGCGGGTGTGTGAGGTTGTGCGTGTATACCTCCC
TCTGTCTCGATCCCTCTGGGGCTCTCTTCCCTCCTTCATGACTCTCTCTC
TTGCATCCCCCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCCTCCTCCCTCAGACCTTCCAACACGGGGCCCTGCTCGTCAATGTCTG
CGTCACCACCACATGCGCCTTAATCCACACCCTATACGTCGCATACCACG
AGCGCCTCTCCCCTCTCTCCGTCCTTGAATCCAAGTCGGACATCCGCCTC
CATCGTCACCGAGTCGGGCCCTCCCCTCGATATCACACCACCCCCCGCGG
TCGACACCCCCGCCACCATTGGGCTGGTAACTCCCCCACCCCCCGTACAC
ACGGTACGTGCCCACCCTCCCGCCCCCCTCCCTCCCCCCCTTCCTTCGTC
GTCGCTCCTGTGCTATGCTTGCTTCCCTGCCGCCATCAGCTGATGCCTCC
CCAACTCCCTCCCCCCCTCCGTTCTCCACAGGCCAATTTTCGTCTGGCTT
GCCTCACACGCCTCCAGCACGAGGGAGGGAGGGAGGGAGTGATGGAGGGT
TCTCGCGTCAGTCTTCCTTTGGCCTTTCGTCTTCATCCCTAAGCGCGCTA
GAGAAGCAGCAGCAGCAGCAGCATCATCTGCAGAATGGAGCGTTCGAGTT
GTTGGACCTGAGTGGACAAGGGAGGGATGGGAGGAGGGAGGGAGGGAAGG
AGGGAGGAAGGGAAGGAGTGTCGATTATGCCGCCTGGATTTGGCAGAAGG
AAGCAGGAAGAGGGGGAGGAGGAGGGGGTGAAGGATGGAGAGAAGGAAGG
GGATAACACGCATGTTACTGCCCCCTTTTCCTCCAGAATGGTGCAGATAG
TGGTGGGTGATCAGCAGAAGAAGGAGGAGGGGGAGGGGAAAGAGGAGGAG
AAGGAAAAGAGGAAGACGGAGAATGAGGAGGAGGGAGGGGGGAAAGAGGA
GGAGGAGAAAGAGAAGAGGAAGACGGAGGAGGAGGAGGAGGCGGAGAGAG
AGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGACATA
GAGCTACCGCCGGAAGATAGGGAATGGAATGACGGCGAGGGTTATGCGGA
GGGGGACGTGGCACACCAGGTGCTGATGGAGGAAGAGGAGGTGGAGGCCG
AGGCCCTTGAACGGAACCGGGAATTTATCAGGCTAGCGTCTTTGTCGGAG
AGTGAGGAGGGGGGGGGAATAGGGGAGGAGGGAGACGAAGGGCGTTTGGA
GGAGGGGAATCGATAGGAGGGGGGGAAGCGATAGGAGGGGGAGAAGGAGG
GAGGGGGGGTCAGAGAGAGGGAGGGACGGAGGCAGGGACCGAGGAAGGGT
TGTACATACGTTGACGGGTAGGGATAATATATGAGTCCATTTGAAATTAG
AGAGAAGGAGGACGAGGAGGAAGAGAAGAAGAAGAAGAAGAAGAACAAGA
ACAAGAACAAGAACAAGAACAAAAAGAGGGACAAGTGGAGGGTAAGAATA
GAAGGACGGAAGAAGGCACAGGCAGGTGTCACAAGCGGAGGAAAAGGGAT
AATCACAGTATCTTTGATTCACTGAAGGGGGGAGGAGTCACCCAGCGAGA
GGAATAGACATAGATGTAGGAGACAAAGACAAACAGAGGCAGAGACAGTG
ACAGACAGAGAAGTGATGATGATGATGACTTGTGTTGTTGACGAGGCAAG
ACGACAAACAACGACAAATGAAGAATATTGCACTGCAAGAATTATTCTCG
CT back to topCoding sequence (CDS) from alignment at chr17:694784..698235+ >NO17G02360.1 ID=NO17G02360.1|Name=NO17G02360.1|organism=Nannochloropsis oceanica|type=CDS|length=2064bp|location=Sequence derived from alignment at chr17:694784..698235+ (Nannochloropsis oceanica) ATGCCCGATCGCGTTCCACTTGTGCACCGTCATAGAAAGCCACACCATTT CCACTTTTCCGACGACGTCGAGGAGGAGGAAGACGCCACGAGACAGCAGC ACCAGCATCAGCAGCACCAGCATCAGCAGCACCAGCACCAACATCCTTCT CCCCACAGCCGCTCTCACCACCAGCCCGACTCATCGCCCTCCTTCTCTTC CCCATTCGCACCCTCGTCCGCGGCCCCTGCTCTCGGCGGCCCTTCCTCTT CACGCACCATTGCTCGCCCCAAGCATCCCGCCGCTGCCTCCCTGCAGCGG CGACCTACCCCTCTCCTCTCCCATTACCAGCAGCAACATGCCTCCTCCTC CTCTACGCCCTCAGCCACCCCTAAGGCGTTAGCACATAAACCCCCGCACA ATGCCACCACCAACACGAACAAACGGCTAGGTCAGGGGGGGAAACCCGCT CCTCCCCTCCCTCCTCACCTCTCCTCGTCGTGGCCCTGGGTATTGTTTGG CTCGTTAACCTTGACCTTTAATGCCGGGTATATCAATGGGATTACCCTGC ACAACCTGCATCACATGGCGTCGGCCCACGTGACAGGGATGGTGGCCCGC ATGAGCAACCTGATTGCCATCCGTGAGTTCGGCGAGTTCTCAGCCTATTT CGTCGCCTACAGCTGCTTCATTCTGGGAGCCTGCATGGGAGGGCTGCTCA TCTCGCACGAGACATTCTACCTGGGACGAAACTACGCGCGGGCCCTCTTT CTGACTGCTGCCATCCAGGGTGTCGCTCTCCTGATCGAAAAAGAGTGGGA TTCCTCCGTCTACTTCGTCTATGCCTGCTGCCTGGCCATGGGCCTGCAGA ACTCCCTGACAAGTAAATACAGTGGCTCCGTCGTTCGCACCACTCACCTG ACGGGCGCCAGTACCGACCTGGGCATTGCTCTGGGGCACATCATGAAGGG TCGCTCGGAAGAGTGGTGGAAGGTCAAGCTGCACGGCATCGCTATCTTTG GGTTCTTTTGTGGTGGGGTTGCCGGGCATTTCGCCTTTGAGACCTTCCAA CACGGGGCCCTGCTCGTCAATGTCTGCGTCACCACCACATGCGCCTTAAT CCACACCCTATACGTCGCATACCACGAGCGCCTCTCCCCTCTCTCCGTCC TTGAATCCAAGTCGGACATCCGCCTCCATCGTCACCGAGTCGGGCCCTCC CCTCGATATCACACCACCCCCCGCGGTCGACACCCCCGCCACCATTGGGC TGGTAACTCCCCCACCCCCCGTACACACGGCCAATTTTCGTCTGGCTTGC CTCACACGCCTCCAGCACGAGGGAGGGAGGGAGGGAGTGATGGAGGGTTC TCGCGTCAGTCTTCCTTTGGCCTTTCGTCTTCATCCCTAAGCGCGCTAGA GAAGCAGCAGCAGCAGCAGCATCATCTGCAGAATGGAGCGTTCGAGTTGT TGGACCTGAGTGGACAAGGGAGGGATGGGAGGAGGGAGGGAGGGAAGGAG GGAGGAAGGGAAGGAGTGTCGATTATGCCGCCTGGATTTGGCAGAAGGAA GCAGGAAGAGGGGGAGGAGGAGGGGGTGAAGGATGGAGAGAAGGAAGGGG ATAACACGCATGTTACTGCCCCCTTTTCCTCCAGAATGGTGCAGATAGTG GTGGGTGATCAGCAGAAGAAGGAGGAGGGGGAGGGGAAAGAGGAGGAGAA GGAAAAGAGGAAGACGGAGAATGAGGAGGAGGGAGGGGGGAAAGAGGAGG AGGAGAAAGAGAAGAGGAAGACGGAGGAGGAGGAGGAGGCGGAGAGAGAG GAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGACATAGA GCTACCGCCGGAAGATAGGGAATGGAATGACGGCGAGGGTTATGCGGAGG GGGACGTGGCACACCAGGTGCTGATGGAGGAAGAGGAGGTGGAGGCCGAG GCCCTTGAACGGAACCGGGAATTTATCAGGCTAGCGTCTTTGTCGGAGAG TGAGGAGGGGGGGGGAATAGGGGAGGAGGGAGACGAAGGGCGTTTGGAGG AGGGGAATCGATAG back to top
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