NO17G02110.1, NO17G02110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02110.1
Unique NameNO17G02110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2993
Alignment locationchr17:611923..614915 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:611923..614915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G02110.1 vs.
Match: EWM24201.1 (homoserine dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 763.1 bits (1969), Expect = 4.700e-217
Identity = 377/425 (88.71%), Postives = 409/425 (96.24%), Query Frame = 0 
Query:    1 MSTPLVVGLVGGGTVGGGVYDIVEYTHQEFFRSLGANIHIKKIAVKNLKKPRDFAVAAHTNLVGDWRQVLDDPDINTVVEVMGGITEAKEVVFGAIAKGKHVVTANKALLAAYLPEIVALLKEHPEVKFGYEAAVCGGIPIIHTLQNDYLGDQISQILGIMNGTTNFMLTKMEGGAEYGEVLAEAQALGFAEADPTADVEGHDVQAKIALLAKLAFGVHVPFDEIPTTGISSIESVDFEYAKLLNATIKLLGMAQLSPDGAKLSVAVSPFIVPRDHAIAAANGSTNIVNISSRNLVSSAYIGPGAGRYPTANSIVSDIVRLARGLVGPPFPVDRAMPLEPDYTSRFYIRLRIQDQLGVIRVVGEIAERHGVSIYAILQNPITDPNDINFVVTTEPARHSQVRAFSEDIEKQDFTKGPPLFFAFLL 426
            MS+ L+VGLVGGGTVGGGVYDIVE+TH++FFRSLGA++ +K+IAV+NL K RDF+VAAHT LVGDWR VLDDP+INTV+EVMGGITEAKEVVFGAIAKGKHV+TANKALLAAYLPEIV LLK+HP+VK GYEAAVCGGIPIIHTLQNDYLGDQ+SQILGIMNGTTNFMLTKME GA+YG+VLAEAQALG+AEADPTADVEGHDVQAKIALLAKLAFGVHVP D+IPT GISS+ SVDFEYA+LLNATIKLLGMAQLSPDG KLSVAVSPFIVPR+H IA  NGSTNIVNISSRNLVSS+YIGPGAGRYPTANSIVSD+VRLARGLVGPPFPVDRAMPLEPDYTSRFYIRLRI+DQLGVIRVVGEIAERHGVSIYAILQNPI+DPNDI+FVVTTEPARHSQV+AF++DIEKQDFTKGPPLFFAFLL
Sbjct:    1 MSSSLIVGLVGGGTVGGGVYDIVEHTHKDFFRSLGAHVQVKRIAVRNLTKQRDFSVAAHTELVGDWRLVLDDPEINTVIEVMGGITEAKEVVFGAIAKGKHVITANKALLAAYLPEIVDLLKKHPQVKLGYEAAVCGGIPIIHTLQNDYLGDQVSQILGIMNGTTNFMLTKMESGADYGQVLAEAQALGYAEADPTADVEGHDVQAKIALLAKLAFGVHVPSDQIPTKGISSVASVDFEYARLLNATIKLLGMAQLSPDGKKLSVAVSPFIVPREHPIAGTNGSTNIVNISSRNLVSSSYIGPGAGRYPTANSIVSDLVRLARGLVGPPFPVDRAMPLEPDYTSRFYIRLRIRDQLGVIRVVGEIAERHGVSIYAILQNPISDPNDIHFVVTTEPARHSQVQAFADDIEKQDFTKGPPLFFAFLL 425
The following BLAST results are available for this feature:
BLAST of NO17G02110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24201.14.700e-21788.71homoserine dehydrogenase [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02110NO17G02110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02110.1NO17G02110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02110.1.cds1NO17G02110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02110.1 ID=NO17G02110.1|Name=NO17G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2993bp
CAAAACATGACGATTTAATTTACTTGCGTCTCGCCGTAGCTCCTTCTCTT
TGCCTTGCCCACTTTGCCCGCCACACTTACTTCCCCTTTTTTCTATATTA
CTTTTGGTACTTTGGTAGCCTCGAAAGCAGGCTGTTTAATAAAGGGCTCT
CCTGCGAGAGAGAAGCCTCTTCTGGCAACTCTTTTTTCTCTCCCTCTTCA
CCTCGGATAGGTAAAAGAGCAAGCATTAAATTGACATTTACGCGTTAAAA
ATAACCATTGCTTATCATACAACAATTATATTCACCTATATGTGCCGCAA
GGATGAGTGAGAGTGATACCACTGACGACGAGGACACATCCTGCACGTCC
ACAAGCCTTACCCCTCGGCCGCCCGAAAACGTCCCTGTCGCTGTCTTAAA
TCTGTCCCGGCGCATCGATGCATTACTGCTGAAATGCTGTCAAGAGCATC
AAGAACAATGATGCTCCGGCACCGACGGATGGGGTTTTCGTCCTAAAACT
CCTGCCGGTAGGCTACGTTACCAACAAGAGGAAGTTTACTGTGGTGATAA
GTGGCTGTGCTTGTTTTTCGGCCTGCCCCTTACTCGCCTTTTTCTCTCTG
TTAAGTCTATATACTCTTCTCCTCATTTGGAATATTGACCTTTGGTGTTG
GCCTCGACTTTCCGTGCAGCATCTATCTCGTTTCTCATTTCCAACCACCG
TTCCTCTTCTTTCTTGTACATCATCACCCCCAGGACAGCCCTGGCCTTAA
GCCAAGGCTCCGCACGCCACATTCGCTTCGGTGTGACCAGTGGTCTCTTC
TTGGGTGCAAGGCTATACCAAGGCCATGGCTATCCAAAGGACGCTGGGTG
ACGCCTTGACGCTCCATCTTTTGGGATATGATGGTAGCAGTGATGCGTTT
TTCTGTCATGGACATCTACAAACACATGCTCCTGAAGAAGCCTCTGCTGC
GGACCAGCCCGCATGTCAAGACTGTATTCGCAGAGGGACGAACGCGGGTT
GGTATGGGGTTGGGCTACGTATATAAATGATAAATGAACACCCCTTGCAC
CGATAACATGCCAAACCTTGCGTGCACAGGTTCCACCACGTCGGCCTTTC
TTCCCCCTCAAATCGTGTGAAAAGATGTTTTTCCCTCCATACACTGACCA
TCTTAATGCATAAAACACAAATAATGGGAATGGAGGGTACTATAGCCCCG
TCTATATTTTCATTCTCGCATGGGCCGCAGTCGCCGATTATTTACTGGCT
AGGAAAGCAAGATATTGAGGAAATGAGCAAACCATACATCCACCTCCAAA
AATCCCTCCTCACAGAGCACAAGTAGCCGCATGCGTGCCTGCATAGTTTG
TAGTTCGCCTTCATCTCTAGACCCGTCAGTCTCTCGCAGCGCACAGTGTC
ATAATCCTCATCCTCGGGTGATCCCTTGCTCCTCCCACAATCCACCTCCC
CAGGCTCCCTGTCGCCTCCTGTGCCCTAAATCCTGGCCACCACTCGACCC
TTTCGGCGTCTCCAGTTAGTCGCCAGGCATTTTTCTACATCTTTCCGCGC
TGCGCCTTCCCGCATTCCTTGTATCCCTCCGTCCAAAATGAGCACTCCCC
TCGTCGTCGGCTTGGTGGGTGGGGGCACCGTCGGCGGCGGCGTCTACGAC
ATTGTGGAGTACACACACCAAGAGTTCTTTCGCTCCTTGGGTGCAAACAT
CCATATCAAGAAGATCGCAGTCAAGAATCTGAAGAAGCCCCGTGATTTTG
CTGTGGCTGCCCACACGAACCTCGTGGGGGACTGGCGCCAAGTCTTGGAC
GATCCCGATATTAATACCGTCGTGGAAGTCATGGGCGGTATAACCGAAGC
AAAGGAAGTCGTCTTTGGGGCCATTGCTAAGGGGAAGCACGTCGTGACGG
CAAATAAGGCTTTGCTCGCCGCTTACCTGCCCGAGATCGTCGCGCTGCTC
AAGGAGCACCCGGAGGTGAAATTTGGGTATGAGGCTGCAGTCTGTGGAGG
CATCCCCATCATCCACACCCTCCAAAACGACTACCTTGGCGACCAAATCT
CCCAAATTCTGGGCATCATGAACGGGACCACAAACTTCATGTTGACCAAA
ATGGAGGGGGGGGCGGAGTACGGCGAGGTGCTGGCGGAGGCGCAGGCGCT
CGGGTTCGCCGAAGCGGATCCGACGGCAGACGTGGAAGGGCATGACGTCC
AAGCGAAGATCGCCTTGCTGGCCAAACTGGCCTTTGGGGTGCATGTCCCC
TTCGATGAAATTCCGACTACGGGGATCTCATCGATTGAGTCGGTGGACTT
TGAATACGCCAAGCTCCTGAACGCCACGATTAAACTGCTGGGGATGGCGC
AACTATCCCCCGATGGGGCCAAGCTTTCTGTGGCTGTCTCCCCTTTTATT
GTACCCAGGGACCATGCCATAGCCGCGGCGAATGGCTCGACGAACATCGT
GAACATATCCTCGAGGAACCTGGTGTCATCTGCGTACATTGGACCGGGGG
CAGGGAGGTATCCTACTGCCAACAGTATCGTGAGCGACATCGTCCGTCTT
GCCCGTGGTTTGGTCGGACCTCCTTTTCCCGTGGATCGTGCCATGCCGCT
AGAGCCTGATTACACCTCGAGGTTCTATATCCGTCTGCGGATCCAGGATC
AATTGGGGGTAATTCGCGTAGTGGGAGAGATTGCGGAGCGGCATGGTGTG
TCGATCTATGCTATCCTTCAAAACCCCATTACGGACCCCAATGATATTAA
TTTTGTGGTTACCACCGAGCCGGCGAGGCATTCACAGGTCAGGGCGTTTT
CGGAGGATATCGAAAAGCAGGATTTCACCAAGGGTCCGCCGTTGTTCTTC
GCGTTTTTGCTTTCGTAAAATGGGTTTGGTTGGGTTGAAGGGAGTAGTAA
GGGAGATCTAGAGAGAGGGTGAGAGGACGATGAAATATGGTAAGAAAGGA
TTGGTATAATGAAAGAAAGAAATTGAGCAGTTTTGCGTTCACC
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protein sequence of NO17G02110.1

>NO17G02110.1-protein ID=NO17G02110.1-protein|Name=NO17G02110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp
MSTPLVVGLVGGGTVGGGVYDIVEYTHQEFFRSLGANIHIKKIAVKNLKK
PRDFAVAAHTNLVGDWRQVLDDPDINTVVEVMGGITEAKEVVFGAIAKGK
HVVTANKALLAAYLPEIVALLKEHPEVKFGYEAAVCGGIPIIHTLQNDYL
GDQISQILGIMNGTTNFMLTKMEGGAEYGEVLAEAQALGFAEADPTADVE
GHDVQAKIALLAKLAFGVHVPFDEIPTTGISSIESVDFEYAKLLNATIKL
LGMAQLSPDGAKLSVAVSPFIVPRDHAIAAANGSTNIVNISSRNLVSSAY
IGPGAGRYPTANSIVSDIVRLARGLVGPPFPVDRAMPLEPDYTSRFYIRL
RIQDQLGVIRVVGEIAERHGVSIYAILQNPITDPNDINFVVTTEPARHSQ
VRAFSEDIEKQDFTKGPPLFFAFLLS*
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mRNA from alignment at chr17:611923..614915+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02110.1 ID=NO17G02110.1|Name=NO17G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2993bp|location=Sequence derived from alignment at chr17:611923..614915+ (Nannochloropsis oceanica)
CAAAACATGACGATTTAATTTACTTGCGTCTCGCCGTAGCTCCTTCTCTT
TGCCTTGCCCACTTTGCCCGCCACACTTACTTCCCCTTTTTTCTATATTA
CTTTTGGTACTTTGGTAGCCTCGAAAGCAGGCTGTTTAATAAAGGGCTCT
CCTGCGAGAGAGAAGCCTCTTCTGGCAACTCTTTTTTCTCTCCCTCTTCA
CCTCGGATAGGTAAAAGAGCAAGCATTAAATTGACATTTACGCGTTAAAA
ATAACCATTGCTTATCATACAACAATTATATTCACCTATATGTGCCGCAA
GGATGAGTGAGAGTGATACCACTGACGACGAGGACACATCCTGCACGTCC
ACAAGCCTTACCCCTCGGCCGCCCGAAAACGTCCCTGTCGCTGTCTTAAA
TCTGTCCCGGCGCATCGATGCATTACTGCTGAAATGCTGTCAAGAGCATC
AAGAACAATGATGCTCCGGCACCGACGGATGGGGTTTTCGTCCTAAAACT
CCTGCCGGTAGGCTACGTTACCAACAAGAGGAAGTTTACTGTGGTGATAA
GTGGCTGTGCTTGTTTTTCGGCCTGCCCCTTACTCGCCTTTTTCTCTCTG
TTAAGTCTATATACTCTTCTCCTCATTTGGAATATTGACCTTTGGTGTTG
GCCTCGACTTTCCGTGCAGCATCTATCTCGTTTCTCATTTCCAACCACCG
TTCCTCTTCTTTCTTGTACATCATCACCCCCAGGACAGCCCTGGCCTTAA
GCCAAGGCTCCGCACGCCACATTCGCTTCGGTGTGACCAGTGGTCTCTTC
TTGGGTGCAAGGCTATACCAAGGCCATGGCTATCCAAAGGACGCTGGGTG
ACGCCTTGACGCTCCATCTTTTGGGATATGATGGTAGCAGTGATGCGTTT
TTCTGTCATGGACATCTACAAACACATGCTCCTGAAGAAGCCTCTGCTGC
GGACCAGCCCGCATGTCAAGACTGTATTCGCAGAGGGACGAACGCGGGTT
GGTATGGGGTTGGGCTACGTATATAAATGATAAATGAACACCCCTTGCAC
CGATAACATGCCAAACCTTGCGTGCACAGGTTCCACCACGTCGGCCTTTC
TTCCCCCTCAAATCGTGTGAAAAGATGTTTTTCCCTCCATACACTGACCA
TCTTAATGCATAAAACACAAATAATGGGAATGGAGGGTACTATAGCCCCG
TCTATATTTTCATTCTCGCATGGGCCGCAGTCGCCGATTATTTACTGGCT
AGGAAAGCAAGATATTGAGGAAATGAGCAAACCATACATCCACCTCCAAA
AATCCCTCCTCACAGAGCACAAGTAGCCGCATGCGTGCCTGCATAGTTTG
TAGTTCGCCTTCATCTCTAGACCCGTCAGTCTCTCGCAGCGCACAGTGTC
ATAATCCTCATCCTCGGGTGATCCCTTGCTCCTCCCACAATCCACCTCCC
CAGGCTCCCTGTCGCCTCCTGTGCCCTAAATCCTGGCCACCACTCGACCC
TTTCGGCGTCTCCAGTTAGTCGCCAGGCATTTTTCTACATCTTTCCGCGC
TGCGCCTTCCCGCATTCCTTGTATCCCTCCGTCCAAAATGAGCACTCCCC
TCGTCGTCGGCTTGGTGGGTGGGGGCACCGTCGGCGGCGGCGTCTACGAC
ATTGTGGAGTACACACACCAAGAGTTCTTTCGCTCCTTGGGTGCAAACAT
CCATATCAAGAAGATCGCAGTCAAGAATCTGAAGAAGCCCCGTGATTTTG
CTGTGGCTGCCCACACGAACCTCGTGGGGGACTGGCGCCAAGTCTTGGAC
GATCCCGATATTAATACCGTCGTGGAAGTCATGGGCGGTATAACCGAAGC
AAAGGAAGTCGTCTTTGGGGCCATTGCTAAGGGGAAGCACGTCGTGACGG
CAAATAAGGCTTTGCTCGCCGCTTACCTGCCCGAGATCGTCGCGCTGCTC
AAGGAGCACCCGGAGGTGAAATTTGGGTATGAGGCTGCAGTCTGTGGAGG
CATCCCCATCATCCACACCCTCCAAAACGACTACCTTGGCGACCAAATCT
CCCAAATTCTGGGCATCATGAACGGGACCACAAACTTCATGTTGACCAAA
ATGGAGGGGGGGGCGGAGTACGGCGAGGTGCTGGCGGAGGCGCAGGCGCT
CGGGTTCGCCGAAGCGGATCCGACGGCAGACGTGGAAGGGCATGACGTCC
AAGCGAAGATCGCCTTGCTGGCCAAACTGGCCTTTGGGGTGCATGTCCCC
TTCGATGAAATTCCGACTACGGGGATCTCATCGATTGAGTCGGTGGACTT
TGAATACGCCAAGCTCCTGAACGCCACGATTAAACTGCTGGGGATGGCGC
AACTATCCCCCGATGGGGCCAAGCTTTCTGTGGCTGTCTCCCCTTTTATT
GTACCCAGGGACCATGCCATAGCCGCGGCGAATGGCTCGACGAACATCGT
GAACATATCCTCGAGGAACCTGGTGTCATCTGCGTACATTGGACCGGGGG
CAGGGAGGTATCCTACTGCCAACAGTATCGTGAGCGACATCGTCCGTCTT
GCCCGTGGTTTGGTCGGACCTCCTTTTCCCGTGGATCGTGCCATGCCGCT
AGAGCCTGATTACACCTCGAGGTTCTATATCCGTCTGCGGATCCAGGATC
AATTGGGGGTAATTCGCGTAGTGGGAGAGATTGCGGAGCGGCATGGTGTG
TCGATCTATGCTATCCTTCAAAACCCCATTACGGACCCCAATGATATTAA
TTTTGTGGTTACCACCGAGCCGGCGAGGCATTCACAGGTCAGGGCGTTTT
CGGAGGATATCGAAAAGCAGGATTTCACCAAGGGTCCGCCGTTGTTCTTC
GCGTTTTTGCTTTCGTAAAATGGGTTTGGTTGGGTTGAAGGGAGTAGTAA
GGGAGATCTAGAGAGAGGGTGAGAGGACGATGAAATATGGTAAGAAAGGA
TTGGTATAATGAAAGAAAGAAATTGAGCAGTTTTGCGTTCACC
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Coding sequence (CDS) from alignment at chr17:611923..614915+

>NO17G02110.1 ID=NO17G02110.1|Name=NO17G02110.1|organism=Nannochloropsis oceanica|type=CDS|length=1281bp|location=Sequence derived from alignment at chr17:611923..614915+ (Nannochloropsis oceanica)
ATGAGCACTCCCCTCGTCGTCGGCTTGGTGGGTGGGGGCACCGTCGGCGG
CGGCGTCTACGACATTGTGGAGTACACACACCAAGAGTTCTTTCGCTCCT
TGGGTGCAAACATCCATATCAAGAAGATCGCAGTCAAGAATCTGAAGAAG
CCCCGTGATTTTGCTGTGGCTGCCCACACGAACCTCGTGGGGGACTGGCG
CCAAGTCTTGGACGATCCCGATATTAATACCGTCGTGGAAGTCATGGGCG
GTATAACCGAAGCAAAGGAAGTCGTCTTTGGGGCCATTGCTAAGGGGAAG
CACGTCGTGACGGCAAATAAGGCTTTGCTCGCCGCTTACCTGCCCGAGAT
CGTCGCGCTGCTCAAGGAGCACCCGGAGGTGAAATTTGGGTATGAGGCTG
CAGTCTGTGGAGGCATCCCCATCATCCACACCCTCCAAAACGACTACCTT
GGCGACCAAATCTCCCAAATTCTGGGCATCATGAACGGGACCACAAACTT
CATGTTGACCAAAATGGAGGGGGGGGCGGAGTACGGCGAGGTGCTGGCGG
AGGCGCAGGCGCTCGGGTTCGCCGAAGCGGATCCGACGGCAGACGTGGAA
GGGCATGACGTCCAAGCGAAGATCGCCTTGCTGGCCAAACTGGCCTTTGG
GGTGCATGTCCCCTTCGATGAAATTCCGACTACGGGGATCTCATCGATTG
AGTCGGTGGACTTTGAATACGCCAAGCTCCTGAACGCCACGATTAAACTG
CTGGGGATGGCGCAACTATCCCCCGATGGGGCCAAGCTTTCTGTGGCTGT
CTCCCCTTTTATTGTACCCAGGGACCATGCCATAGCCGCGGCGAATGGCT
CGACGAACATCGTGAACATATCCTCGAGGAACCTGGTGTCATCTGCGTAC
ATTGGACCGGGGGCAGGGAGGTATCCTACTGCCAACAGTATCGTGAGCGA
CATCGTCCGTCTTGCCCGTGGTTTGGTCGGACCTCCTTTTCCCGTGGATC
GTGCCATGCCGCTAGAGCCTGATTACACCTCGAGGTTCTATATCCGTCTG
CGGATCCAGGATCAATTGGGGGTAATTCGCGTAGTGGGAGAGATTGCGGA
GCGGCATGGTGTGTCGATCTATGCTATCCTTCAAAACCCCATTACGGACC
CCAATGATATTAATTTTGTGGTTACCACCGAGCCGGCGAGGCATTCACAG
GTCAGGGCGTTTTCGGAGGATATCGAAAAGCAGGATTTCACCAAGGGTCC
GCCGTTGTTCTTCGCGTTTTTGCTTTCGTAA
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Synonyms
Publications