NO17G02060.1, NO17G02060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02060.1
Unique NameNO17G02060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1188
Alignment locationchr17:593704..594891 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:593704..594891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO17G02060.1 vs.
Match: EWM24207.1 (hypothetical protein Naga_100217g3 [Nannochloropsis gaditana])

HSP 1 Score: 419.5 bits (1077), Expect = 1.200e-113
Identity = 218/347 (62.82%), Postives = 270/347 (77.81%), Query Frame = 0 
Query:   14 WLLLGTGVFFAAGGALAMVYLLTDRHRWRRGADMDYDEDDA--------EEVICLSDIEDEEEVTALDFKPFLLPLYGRNSRQGRRRQRRGGAPGMRHPHQPAKKLLGPHVESFPKEERLQHITKIVIHTKEETFSKQRCKACWLLKRECLCEGVVPVKLPIDFNVWLHYKEYLRISNTGHLLTLAHPGSRLLVEGREADDARLAQLEAAAIRDPFSVVALMPCAGALSVAELKQKRREHGTTGRLQVILLDGTWRQARALNRRVSEKVVRVKVEVADRPTVFRLRQRTRADGISTIEAALWFIEDWGGGGTDGGGKEGVKEVLRMLGTHNERVLKSSGKLHKVVDR 353
            WL +G G+   A GAL MVYL   + + R  A     +  A        EE + LSDIEDE++++    +  +LP+YGRNSRQ RRR+RRG   G+ HP   AK+LLGPH+ S+PK+ RLQH+TKIVI TKEETFS+ RCK+CWLL+R CLC+G+VPV LP+DF+V LHYKE+LRISN+GHLL LAHPGSRLLVEG+E D+ +L+ LEAAA+R+P+SVV LMPCAG+LS++ELKQ+R E GTTGRL VILLDGTWRQARALNRRVSEKVVRV+VEV ++P++FRLR RTRADGIST+EAAL  +E+WG  G    G+ GV E+LR+LG HNERVL +SGK  KV DR
Sbjct:   15 WLTIGAGISLVATGALVMVYLFLAQQQGRPSAQSRTKQQGADRSRVPGEEEELELSDIEDEDQIS--QEQSLVLPIYGRNSRQSRRRRRRGDTAGVPHPRH-AKRLLGPHILSYPKDIRLQHMTKIVIQTKEETFSRHRCKSCWLLERHCLCDGLVPVSLPMDFSVLLHYKEFLRISNSGHLLALAHPGSRLLVEGKEDDERKLSALEAAAVREPYSVVVLMPCAGSLSISELKQRREESGTTGRLHVILLDGTWRQARALNRRVSEKVVRVRVEVTEKPSMFRLRTRTRADGISTLEAALSLVEEWGKEGRQ-EGEAGVAEMLRLLGVHNERVLVASGKPAKVGDR 357
The following BLAST results are available for this feature:
BLAST of NO17G02060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24207.11.200e-11362.82hypothetical protein Naga_100217g3 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02060NO17G02060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02060.1NO17G02060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02060.1.cds1NO17G02060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02060.1 ID=NO17G02060.1|Name=NO17G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1188bp
ATGTCATCACGTGTGGTTGCTGCAGGGGCGCGATTTTCTTGGCTGCTCTT
GGGGACAGGGGTGTTCTTCGCAGCGGGCGGAGCACTGGCCATGGTGTATC
TCCTGACCGACAGGCACCGCTGGCGTCGAGGGGCGGACATGGACTACGAC
GAGGACGATGCCGAAGAGGTGATATGTCTCTCTGACATTGAAGACGAGGA
GGAGGTCACTGCATTGGATTTTAAGCCATTCCTGCTCCCGTTATACGGAC
GCAACAGTAGGCAAGGTCGACGTCGTCAACGACGAGGAGGGGCGCCTGGG
ATGCGCCACCCCCATCAGCCTGCAAAGAAGCTGCTCGGACCCCACGTTGA
GTCGTTTCCTAAGGAAGAACGACTGCAGCATATCACGAAGATTGTCATTC
ATACGAAGGAAGAAACGTTTAGCAAACAGAGGTGCAAAGCTTGCTGGTTG
CTGAAAAGGGAGTGTTTGTGTGAGGGGGTTGTGCCCGTCAAGCTGCCGAT
CGATTTTAACGTCTGGCTGCATTATAAAGAATACCTACGTATAAGCAACA
CAGGGCACCTTCTTACCCTCGCTCACCCCGGCTCTCGCCTACTAGTGGAA
GGAAGAGAAGCAGACGACGCCCGCCTGGCCCAGCTAGAGGCCGCCGCTAT
CAGAGACCCTTTCTCCGTTGTTGCGCTCATGCCGTGCGCTGGGGCCTTGT
CAGTGGCAGAACTAAAACAAAAAAGGAGAGAACATGGAACGACGGGGAGG
TTGCAAGTGATCTTGCTGGATGGGACTTGGCGGCAGGCTCGGGCGTTGAA
CAGGAGGGTAAGTGAGAAAGTGGTAAGGGTAAAGGTAGAGGTGGCTGATC
GACCGACGGTTTTTCGACTCCGACAACGGACGAGGGCCGATGGGATTAGT
ACGATCGAAGCGGCCCTGTGGTTCATCGAGGATTGGGGTGGGGGTGGGAC
TGATGGAGGGGGAAAGGAAGGAGTGAAGGAGGTCTTGAGGATGTTGGGCA
CTCACAACGAGAGGGTACTAAAGTCGTCGGGAAAATTGCATAAGGTTGTG
GACAGGGGGTTCGGGAAGCGGCAGGAGAAGGAGAATTGGGCACAGAGAAA
CAAGGAGGAGGAGGAGGAGGAGGAGGAAGAGAAGGAGGAAGCGGAGGAGG
AAAGAGTGGAGCAGGGAGGGATAGAGGCAGGAGAATGA
back to top

protein sequence of NO17G02060.1

>NO17G02060.1-protein ID=NO17G02060.1-protein|Name=NO17G02060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MSSRVVAAGARFSWLLLGTGVFFAAGGALAMVYLLTDRHRWRRGADMDYD
EDDAEEVICLSDIEDEEEVTALDFKPFLLPLYGRNSRQGRRRQRRGGAPG
MRHPHQPAKKLLGPHVESFPKEERLQHITKIVIHTKEETFSKQRCKACWL
LKRECLCEGVVPVKLPIDFNVWLHYKEYLRISNTGHLLTLAHPGSRLLVE
GREADDARLAQLEAAAIRDPFSVVALMPCAGALSVAELKQKRREHGTTGR
LQVILLDGTWRQARALNRRVSEKVVRVKVEVADRPTVFRLRQRTRADGIS
TIEAALWFIEDWGGGGTDGGGKEGVKEVLRMLGTHNERVLKSSGKLHKVV
DRGFGKRQEKENWAQRNKEEEEEEEEEKEEAEEERVEQGGIEAGE*
back to top

mRNA from alignment at chr17:593704..594891-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02060.1 ID=NO17G02060.1|Name=NO17G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1188bp|location=Sequence derived from alignment at chr17:593704..594891- (Nannochloropsis oceanica)
ATGTCATCACGTGTGGTTGCTGCAGGGGCGCGATTTTCTTGGCTGCTCTT
GGGGACAGGGGTGTTCTTCGCAGCGGGCGGAGCACTGGCCATGGTGTATC
TCCTGACCGACAGGCACCGCTGGCGTCGAGGGGCGGACATGGACTACGAC
GAGGACGATGCCGAAGAGGTGATATGTCTCTCTGACATTGAAGACGAGGA
GGAGGTCACTGCATTGGATTTTAAGCCATTCCTGCTCCCGTTATACGGAC
GCAACAGTAGGCAAGGTCGACGTCGTCAACGACGAGGAGGGGCGCCTGGG
ATGCGCCACCCCCATCAGCCTGCAAAGAAGCTGCTCGGACCCCACGTTGA
GTCGTTTCCTAAGGAAGAACGACTGCAGCATATCACGAAGATTGTCATTC
ATACGAAGGAAGAAACGTTTAGCAAACAGAGGTGCAAAGCTTGCTGGTTG
CTGAAAAGGGAGTGTTTGTGTGAGGGGGTTGTGCCCGTCAAGCTGCCGAT
CGATTTTAACGTCTGGCTGCATTATAAAGAATACCTACGTATAAGCAACA
CAGGGCACCTTCTTACCCTCGCTCACCCCGGCTCTCGCCTACTAGTGGAA
GGAAGAGAAGCAGACGACGCCCGCCTGGCCCAGCTAGAGGCCGCCGCTAT
CAGAGACCCTTTCTCCGTTGTTGCGCTCATGCCGTGCGCTGGGGCCTTGT
CAGTGGCAGAACTAAAACAAAAAAGGAGAGAACATGGAACGACGGGGAGG
TTGCAAGTGATCTTGCTGGATGGGACTTGGCGGCAGGCTCGGGCGTTGAA
CAGGAGGGTAAGTGAGAAAGTGGTAAGGGTAAAGGTAGAGGTGGCTGATC
GACCGACGGTTTTTCGACTCCGACAACGGACGAGGGCCGATGGGATTAGT
ACGATCGAAGCGGCCCTGTGGTTCATCGAGGATTGGGGTGGGGGTGGGAC
TGATGGAGGGGGAAAGGAAGGAGTGAAGGAGGTCTTGAGGATGTTGGGCA
CTCACAACGAGAGGGTACTAAAGTCGTCGGGAAAATTGCATAAGGTTGTG
GACAGGGGGTTCGGGAAGCGGCAGGAGAAGGAGAATTGGGCACAGAGAAA
CAAGGAGGAGGAGGAGGAGGAGGAGGAAGAGAAGGAGGAAGCGGAGGAGG
AAAGAGTGGAGCAGGGAGGGATAGAGGCAGGAGAATGA
back to top

Coding sequence (CDS) from alignment at chr17:593704..594891-

>NO17G02060.1 ID=NO17G02060.1|Name=NO17G02060.1|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at chr17:593704..594891- (Nannochloropsis oceanica)
ATGTCATCACGTGTGGTTGCTGCAGGGGCGCGATTTTCTTGGCTGCTCTT
GGGGACAGGGGTGTTCTTCGCAGCGGGCGGAGCACTGGCCATGGTGTATC
TCCTGACCGACAGGCACCGCTGGCGTCGAGGGGCGGACATGGACTACGAC
GAGGACGATGCCGAAGAGGTGATATGTCTCTCTGACATTGAAGACGAGGA
GGAGGTCACTGCATTGGATTTTAAGCCATTCCTGCTCCCGTTATACGGAC
GCAACAGTAGGCAAGGTCGACGTCGTCAACGACGAGGAGGGGCGCCTGGG
ATGCGCCACCCCCATCAGCCTGCAAAGAAGCTGCTCGGACCCCACGTTGA
GTCGTTTCCTAAGGAAGAACGACTGCAGCATATCACGAAGATTGTCATTC
ATACGAAGGAAGAAACGTTTAGCAAACAGAGGTGCAAAGCTTGCTGGTTG
CTGAAAAGGGAGTGTTTGTGTGAGGGGGTTGTGCCCGTCAAGCTGCCGAT
CGATTTTAACGTCTGGCTGCATTATAAAGAATACCTACGTATAAGCAACA
CAGGGCACCTTCTTACCCTCGCTCACCCCGGCTCTCGCCTACTAGTGGAA
GGAAGAGAAGCAGACGACGCCCGCCTGGCCCAGCTAGAGGCCGCCGCTAT
CAGAGACCCTTTCTCCGTTGTTGCGCTCATGCCGTGCGCTGGGGCCTTGT
CAGTGGCAGAACTAAAACAAAAAAGGAGAGAACATGGAACGACGGGGAGG
TTGCAAGTGATCTTGCTGGATGGGACTTGGCGGCAGGCTCGGGCGTTGAA
CAGGAGGGTAAGTGAGAAAGTGGTAAGGGTAAAGGTAGAGGTGGCTGATC
GACCGACGGTTTTTCGACTCCGACAACGGACGAGGGCCGATGGGATTAGT
ACGATCGAAGCGGCCCTGTGGTTCATCGAGGATTGGGGTGGGGGTGGGAC
TGATGGAGGGGGAAAGGAAGGAGTGAAGGAGGTCTTGAGGATGTTGGGCA
CTCACAACGAGAGGGTACTAAAGTCGTCGGGAAAATTGCATAAGGTTGTG
GACAGGGGGTTCGGGAAGCGGCAGGAGAAGGAGAATTGGGCACAGAGAAA
CAAGGAGGAGGAGGAGGAGGAGGAGGAAGAGAAGGAGGAAGCGGAGGAGG
AAAGAGTGGAGCAGGGAGGGATAGAGGCAGGAGAATGA
back to top
Synonyms
Publications