NO17G02040.1, NO17G02040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02040.1
Unique NameNO17G02040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1629
Alignment locationchr17:588871..590803 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:588871..590803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G02040.1 vs.
Match: EWM24211.1 (Bud13 [Nannochloropsis gaditana]; EWM24212.1 Bud13 [Nannochloropsis gaditana])

HSP 1 Score: 360.1 bits (923), Expect = 1.100e-95
Identity = 234/402 (58.21%), Postives = 263/402 (65.42%), Query Frame = 0 
Query:   96 AATSDISPPRRRPRQDSSSPDNSPPRRTRRQSL------SPSPPRAAHARASGFAGAVVEDASPPRRRKRHDSPPLPSFRVAVDAGADE-DAAPPRRRRRHDSPSSSPSHSTLSKSRKDEKEEKDASPPRQRRRQRHDSPTSARDGGADGGMDGGRETVKGDDASSPHRRHHDSPRPQRRSKEKEKEGREEKEKKKESGLKTGTEFRVELEAQKAAQARAWAEGAKDQSMTGQNAETVVRDRRGRKLEMLSEFLNQEAFKEGKAAKEAKEEYEWGRGKVQKEKDEEHRKELEDIKNAPFARYESDPTLERARKAEIRADDPMAAYMMKKLREATVEAAARSGRVLKPEYKGPAPSPNRFNIRPGYRWDGIDRGNGFEGKWFKRQSELVHKQQKDRAWGMSDL 491
            A   D+SPPRR PR      D SPPRRTR + L      SP  PR      S F  +   + +     + H   P PS   + D G +  D +PPRRRRRHDSPS                      P R+RRR    SP+  RDG  D    GG+ T   DD            R         + G+    + KE GLKTG EFR ELEAQK A+A AWAEGAKD  +TGQ+AETVVRDRRGRKLEMLSEFLNQEA+KEGKAAKEAKEEYEWGRGKVQKEKDE+HR+ELEDIKNAPFARYESD  LERARK EIRADDPMAAYM++K R+A  + A RSG+VLKPEYKGP P PNRFNIRPGYRWDGIDRGNGFE +WFKRQSELV K ++DRAWGMSDL
Sbjct:   11 AGAQDLSPPRR-PRSAGPQGDVSPPRRTRPERLPGTDASSPRRPRRRSPSVSPFDPSCRSNTTSGEPSRPHQPRPSPS--PSRDPGPEGGDISPPRRRRRHDSPS----------------------PLRRRRRHDTPSPSPTRDG--DPPKRGGQGT--RDD------------RGAVAVAVVSESGKTASTRPKEDGLKTGAEFRAELEAQKDAEAHAWAEGAKDAGVTGQHAETVVRDRRGRKLEMLSEFLNQEAYKEGKAAKEAKEEYEWGRGKVQKEKDEDHRRELEDIKNAPFARYESDLKLERARKEEIRADDPMAAYMLQKQRDALAQEATRSGKVLKPEYKGPPPKPNRFNIRPGYRWDGIDRGNGFEARWFKRQSELVTKHERDRAWGMSDL 371
The following BLAST results are available for this feature:
BLAST of NO17G02040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24211.11.100e-9558.21Bud13 [Nannochloropsis gaditana]; EWM24212.1 Bud13... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02040NO17G02040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02040.1NO17G02040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02040.1.cds1NO17G02040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02040.1.cds2NO17G02040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02040.1.cds3NO17G02040.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02040.1 ID=NO17G02040.1|Name=NO17G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1629bp
AAAAACACAGGGTGCTGCAGCCACCAGGCAAACGTCTTATCATCAGCATC
AGCACGCGTCGCCCTCCTACACAGCAAGTCAGCCAACCCCCCAACCATGG
CCTCCGCCAAGTCTAAAGCAGACATCCTCAAGCGGTACCTCTCATCTTCG
ATGAGCGAATCTAATGAGGTCATAAAGACAAAGAAGAAACGCAAAAAGAG
GCCCGCAGTCGTAACGGGCGGCATGCACCTGGTGGACCAGGACGAATGGG
GCGGGTTTGGTCGGGGCGGCAGCGATAACGAAGTTGATGACGGCCCCCTG
GTCGTAGACGACAAGGGCGACCAAGTCGCCTCCGTGGAAGCCGCTTCGAA
GAAGGCAGCAGCCGACCCCGCACCGGGAGCAGCAGCCACTAGTGACATTT
CCCCTCCCCGGCGGCGCCCACGGCAGGACAGTTCCAGCCCTGACAATTCT
CCTCCCCGGCGGACACGCCGTCAGAGCCTTTCCCCCTCTCCTCCTCGTGC
TGCGCATGCCCGCGCCAGTGGGTTCGCTGGTGCTGTCGTTGAGGACGCTT
CGCCTCCCCGGCGTCGCAAGCGCCACGATAGTCCACCTCTTCCTTCTTTT
CGTGTTGCTGTTGATGCTGGTGCTGACGAGGACGCAGCTCCTCCACGTCG
ACGAAGACGACACGATAGCCCTTCCTCCTCTCCTTCTCATTCTACCCTTT
CCAAGAGCCGTAAAGACGAAAAGGAGGAGAAAGATGCCTCCCCACCTCGG
CAGCGGAGGCGACAACGGCATGACAGCCCTACTTCCGCTCGTGATGGTGG
GGCTGACGGTGGGATGGATGGAGGAAGGGAGACGGTGAAGGGTGATGATG
CCTCCTCGCCCCATCGTCGTCATCATGACAGCCCCCGTCCTCAAAGGAGG
AGCAAGGAGAAGGAGAAGGAAGGGAGGGAAGAGAAGGAAAAGAAGAAGGA
GTCGGGCCTCAAAACCGGGACAGAATTTCGTGTGGAGCTCGAAGCACAGA
AGGCGGCCCAAGCACGAGCATGGGCGGAGGGGGCTAAAGATCAGTCAATG
ACGGGGCAGAACGCGGAGACCGTTGTCCGGGATCGTCGCGGGCGGAAGCT
GGAGATGCTGAGTGAGTTTTTGAACCAAGAGGCCTTCAAGGAGGGGAAGG
CTGCCAAGGAAGCGAAGGAGGAATATGAGTGGGGGAGGGGAAAGGTGCAG
AAGGAGAAGGATGAGGAGCACCGAAAGGAGTTGGAGGACATTAAGAACGC
TCCATTTGCAAGGTACGAGAGCGATCCGACTTTGGAACGGGCCCGTAAAG
CGGAGATCAGAGCGGATGACCCCATGGCCGCGTATATGATGAAAAAGCTA
CGGGAGGCCACGGTGGAGGCAGCGGCGAGAAGCGGCAGGGTGCTCAAGCC
TGAATATAAGGGGCCGGCACCAAGCCCTAATCGTTTTAATATTCGCCCGG
GGTACCGTTGGGATGGAATCGATCGTGGGAATGGCTTTGAAGGGAAGTGG
TTCAAGCGGCAGAGTGAGCTGGTCCACAAGCAGCAGAAGGATCGGGCATG
GGGGATGTCGGATTTGTAAGATAGCATAGTTCTTTTTTCATGCTACACTC
CTATAAAACTATTGCATGCAACCTGACGT
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protein sequence of NO17G02040.1

>NO17G02040.1-protein ID=NO17G02040.1-protein|Name=NO17G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MASAKSKADILKRYLSSSMSESNEVIKTKKKRKKRPAVVTGGMHLVDQDE
WGGFGRGGSDNEVDDGPLVVDDKGDQVASVEAASKKAAADPAPGAAATSD
ISPPRRRPRQDSSSPDNSPPRRTRRQSLSPSPPRAAHARASGFAGAVVED
ASPPRRRKRHDSPPLPSFRVAVDAGADEDAAPPRRRRRHDSPSSSPSHST
LSKSRKDEKEEKDASPPRQRRRQRHDSPTSARDGGADGGMDGGRETVKGD
DASSPHRRHHDSPRPQRRSKEKEKEGREEKEKKKESGLKTGTEFRVELEA
QKAAQARAWAEGAKDQSMTGQNAETVVRDRRGRKLEMLSEFLNQEAFKEG
KAAKEAKEEYEWGRGKVQKEKDEEHRKELEDIKNAPFARYESDPTLERAR
KAEIRADDPMAAYMMKKLREATVEAAARSGRVLKPEYKGPAPSPNRFNIR
PGYRWDGIDRGNGFEGKWFKRQSELVHKQQKDRAWGMSDL*
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mRNA from alignment at chr17:588871..590803+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02040.1 ID=NO17G02040.1|Name=NO17G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1933bp|location=Sequence derived from alignment at chr17:588871..590803+ (Nannochloropsis oceanica)
AAAAACACAGGGTGCTGCAGCCACCAGGCAAACGTCTTATCATCAGCATC
AGCACGCGTCGCCCTCCTACACAGCAAGTCAGCCAACCCCCCAACCATGG
CCTCCGCCAAGTCTAAAGCAGACATCCTCAAGCGGTACCTCTCATCTTCG
ATGAGCGAATCTAATGGTAGGTGAGGCGTGAAGGTTGCAGCAAAGAAATG
GAAACTGCGGCGATTGTGGGGGATGGGAAGTCGACGGCCTGAGGAAAAGG
AAAGGAAGTATGTATTCCCTCCCTACCCGCCCATATACCACATGCATCAT
ATACACTACAGAGGTCATAAAGACAAAGAAGAAACGCAAAAAGAGGCCCG
CAGTCGTAACGGGCGGCATGCACCTGGTGGACCAGGACGAATGGGGCGGG
TTTGGTCGGGGCGGCAGCGATAACGAAGGTATGTACTTGTATGCGACGTG
ACATGAGTGTAGAGGAGGAACTATCAGCACTGTTATACTCGCTCATAACA
ATGGGCAGCAACACGGAGAAGTCCATACCATATTCAAAATGTCGATCGCT
CATCCCTCTTCTCTGTATCCTGCTCCTATCCCCTCAGTTGATGACGGCCC
CCTGGTCGTAGACGACAAGGGCGACCAAGTCGCCTCCGTGGAAGCCGCTT
CGAAGAAGGCAGCAGCCGACCCCGCACCGGGAGCAGCAGCCACTAGTGAC
ATTTCCCCTCCCCGGCGGCGCCCACGGCAGGACAGTTCCAGCCCTGACAA
TTCTCCTCCCCGGCGGACACGCCGTCAGAGCCTTTCCCCCTCTCCTCCTC
GTGCTGCGCATGCCCGCGCCAGTGGGTTCGCTGGTGCTGTCGTTGAGGAC
GCTTCGCCTCCCCGGCGTCGCAAGCGCCACGATAGTCCACCTCTTCCTTC
TTTTCGTGTTGCTGTTGATGCTGGTGCTGACGAGGACGCAGCTCCTCCAC
GTCGACGAAGACGACACGATAGCCCTTCCTCCTCTCCTTCTCATTCTACC
CTTTCCAAGAGCCGTAAAGACGAAAAGGAGGAGAAAGATGCCTCCCCACC
TCGGCAGCGGAGGCGACAACGGCATGACAGCCCTACTTCCGCTCGTGATG
GTGGGGCTGACGGTGGGATGGATGGAGGAAGGGAGACGGTGAAGGGTGAT
GATGCCTCCTCGCCCCATCGTCGTCATCATGACAGCCCCCGTCCTCAAAG
GAGGAGCAAGGAGAAGGAGAAGGAAGGGAGGGAAGAGAAGGAAAAGAAGA
AGGAGTCGGGCCTCAAAACCGGGACAGAATTTCGTGTGGAGCTCGAAGCA
CAGAAGGCGGCCCAAGCACGAGCATGGGCGGAGGGGGCTAAAGATCAGTC
AATGACGGGGCAGAACGCGGAGACCGTTGTCCGGGATCGTCGCGGGCGGA
AGCTGGAGATGCTGAGTGAGTTTTTGAACCAAGAGGCCTTCAAGGAGGGG
AAGGCTGCCAAGGAAGCGAAGGAGGAATATGAGTGGGGGAGGGGAAAGGT
GCAGAAGGAGAAGGATGAGGAGCACCGAAAGGAGTTGGAGGACATTAAGA
ACGCTCCATTTGCAAGGTACGAGAGCGATCCGACTTTGGAACGGGCCCGT
AAAGCGGAGATCAGAGCGGATGACCCCATGGCCGCGTATATGATGAAAAA
GCTACGGGAGGCCACGGTGGAGGCAGCGGCGAGAAGCGGCAGGGTGCTCA
AGCCTGAATATAAGGGGCCGGCACCAAGCCCTAATCGTTTTAATATTCGC
CCGGGGTACCGTTGGGATGGAATCGATCGTGGGAATGGCTTTGAAGGGAA
GTGGTTCAAGCGGCAGAGTGAGCTGGTCCACAAGCAGCAGAAGGATCGGG
CATGGGGGATGTCGGATTTGTAAGATAGCATAGTTCTTTTTTCATGCTAC
ACTCCTATAAAACTATTGCATGCAACCTGACGT
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Coding sequence (CDS) from alignment at chr17:588871..590803+

>NO17G02040.1 ID=NO17G02040.1|Name=NO17G02040.1|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at chr17:588871..590803+ (Nannochloropsis oceanica)
ATGGCCTCCGCCAAGTCTAAAGCAGACATCCTCAAGCGGTACCTCTCATC
TTCGATGAGCGAATCTAATGAGGTCATAAAGACAAAGAAGAAACGCAAAA
AGAGGCCCGCAGTCGTAACGGGCGGCATGCACCTGGTGGACCAGGACGAA
TGGGGCGGGTTTGGTCGGGGCGGCAGCGATAACGAAGTTGATGACGGCCC
CCTGGTCGTAGACGACAAGGGCGACCAAGTCGCCTCCGTGGAAGCCGCTT
CGAAGAAGGCAGCAGCCGACCCCGCACCGGGAGCAGCAGCCACTAGTGAC
ATTTCCCCTCCCCGGCGGCGCCCACGGCAGGACAGTTCCAGCCCTGACAA
TTCTCCTCCCCGGCGGACACGCCGTCAGAGCCTTTCCCCCTCTCCTCCTC
GTGCTGCGCATGCCCGCGCCAGTGGGTTCGCTGGTGCTGTCGTTGAGGAC
GCTTCGCCTCCCCGGCGTCGCAAGCGCCACGATAGTCCACCTCTTCCTTC
TTTTCGTGTTGCTGTTGATGCTGGTGCTGACGAGGACGCAGCTCCTCCAC
GTCGACGAAGACGACACGATAGCCCTTCCTCCTCTCCTTCTCATTCTACC
CTTTCCAAGAGCCGTAAAGACGAAAAGGAGGAGAAAGATGCCTCCCCACC
TCGGCAGCGGAGGCGACAACGGCATGACAGCCCTACTTCCGCTCGTGATG
GTGGGGCTGACGGTGGGATGGATGGAGGAAGGGAGACGGTGAAGGGTGAT
GATGCCTCCTCGCCCCATCGTCGTCATCATGACAGCCCCCGTCCTCAAAG
GAGGAGCAAGGAGAAGGAGAAGGAAGGGAGGGAAGAGAAGGAAAAGAAGA
AGGAGTCGGGCCTCAAAACCGGGACAGAATTTCGTGTGGAGCTCGAAGCA
CAGAAGGCGGCCCAAGCACGAGCATGGGCGGAGGGGGCTAAAGATCAGTC
AATGACGGGGCAGAACGCGGAGACCGTTGTCCGGGATCGTCGCGGGCGGA
AGCTGGAGATGCTGAGTGAGTTTTTGAACCAAGAGGCCTTCAAGGAGGGG
AAGGCTGCCAAGGAAGCGAAGGAGGAATATGAGTGGGGGAGGGGAAAGGT
GCAGAAGGAGAAGGATGAGGAGCACCGAAAGGAGTTGGAGGACATTAAGA
ACGCTCCATTTGCAAGGTACGAGAGCGATCCGACTTTGGAACGGGCCCGT
AAAGCGGAGATCAGAGCGGATGACCCCATGGCCGCGTATATGATGAAAAA
GCTACGGGAGGCCACGGTGGAGGCAGCGGCGAGAAGCGGCAGGGTGCTCA
AGCCTGAATATAAGGGGCCGGCACCAAGCCCTAATCGTTTTAATATTCGC
CCGGGGTACCGTTGGGATGGAATCGATCGTGGGAATGGCTTTGAAGGGAA
GTGGTTCAAGCGGCAGAGTGAGCTGGTCCACAAGCAGCAGAAGGATCGGG
CATGGGGGATGTCGGATTTGTAA
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Synonyms
Publications