NO17G01970.1, NO17G01970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01970.1
Unique NameNO17G01970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1458
Alignment locationchr17:561503..562960 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:561503..562960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01970.1 vs.
Match: EWM24223.1 (Aldo/keto reductase [Nannochloropsis gaditana])

HSP 1 Score: 717.6 bits (1851), Expect = 2.600e-203
Identity = 356/457 (77.90%), Postives = 405/457 (88.62%), Query Frame = 0 
Query:   15 GIRRIGFGCARITPSPPHLQALAAALKHGIRLFDTAPNYGHIGASERAVGQALAKHFQETGAECRDEVTVCTKFGYFQPAEGHARGPERVSVGSKDEGGLQFSLHPEVMEHELKGSLERLQLEAVDLLYVHNPEHFLADILLRHETGERSFADDKGLAAAMQEERHKLKDRLVRAFEALEGAVARGKIRKGYGVSSNGFGLSSKEGLHLSLSMVLDAAAEGAKRAGKNAPSLRAIQLPLNLLEPGGLVVAAQARAKGIEVYANRPLTAVSQGGLYRLVNKAAAGGEPPEGYMEACRTALELFNPSFLFEGKAEEALTEEEKETREGCRIIQELIRDMNRQLTSFTSTESYTQELERRIIPLIASTFESLDESAADALQVFFVKYGEMVRYHAAVRAVEACKTAGHVLEEGKERGREGGGLLHEYALRWLLEKIPRQLSGVLVGMPQEAYVHDVVRIA 472
            GIRRIGFGCARITPS PHL+AL AA++HGIR+FDTAPNYGH GASERAVGQALA HFQ T    RD++T+C+KFGY++P EGHA GP+ V VG+K+EGGL +SLHPEVMEHELKGSL RLQ++A+D+LYVHNPEH LADI+LRHETGE+SF+DD  L AA++EE+ K+++RLV  FEALEG V  G++RKGYGVSSNGF LSSKEGLHLSL+MVLDAAAEGA+RAGK   SL+AIQLPLNLLEPGG++VAAQAR KG+EV+ANRPLTAVSQGGLYRLVNKAA  GEPP GYMEACRTALE+FNP+ LFEG+AE+ LTEEE ETREGCRIIQ+LIRDMNRQLTSFTSTE+YTQELERRIIP+IASTFESLDE AADALQ FFVKYGEMVRYHAA+RAVEACK AGHVL  G   G + G  LHEYALRW L+K+PRQLSGVLVGMP E YVH+ VR+A
Sbjct:    6 GIRRIGFGCARITPSLPHLKALTAAIRHGIRVFDTAPNYGHAGASERAVGQALATHFQGTNDLDRDDITICSKFGYYRPVEGHAPGPDSVPVGNKEEGGLYYSLHPEVMEHELKGSLARLQVDALDILYVHNPEHVLADIVLRHETGEKSFSDDVSLQAALREEKQKMRERLVHTFEALEGVVGSGRVRKGYGVSSNGFALSSKEGLHLSLAMVLDAAAEGARRAGKETASLKAIQLPLNLLEPGGVMVAAQAREKGLEVFANRPLTAVSQGGLYRLVNKAALSGEPPGGYMEACRTALEVFNPTSLFEGRAEKELTEEELETREGCRIIQDLIRDMNRQLTSFTSTETYTQELERRIIPMIASTFESLDEDAADALQAFFVKYGEMVRYHAAMRAVEACKAAGHVLGGG---GGKAGEPLHEYALRWSLDKVPRQLSGVLVGMPSEEYVHEAVRVA 459
The following BLAST results are available for this feature:
BLAST of NO17G01970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24223.12.600e-20377.90Aldo/keto reductase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01970NO17G01970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01970.1NO17G01970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01970.1.cds1NO17G01970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01970.1 ID=NO17G01970.1|Name=NO17G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp
ATGGCCCCCGCATCGGCAGCAGCAACAGCAGCGGCAGCTATAGGCATCCG
CCGCATTGGCTTTGGCTGCGCCCGCATCACGCCCAGCCCGCCTCACCTCC
AAGCCCTTGCCGCTGCCCTCAAGCACGGCATTCGGCTCTTTGATACAGCA
CCTAACTATGGACATATCGGAGCTTCGGAGCGGGCGGTAGGACAAGCATT
GGCCAAACACTTTCAAGAGACAGGCGCCGAATGCCGGGACGAAGTAACTG
TCTGCACGAAATTTGGGTATTTCCAGCCGGCTGAAGGGCACGCGCGGGGG
CCAGAGCGCGTGTCGGTGGGGAGCAAGGACGAGGGTGGGTTGCAGTTTTC
ATTGCACCCAGAGGTGATGGAGCACGAATTGAAGGGCTCCTTGGAGCGCC
TCCAGCTCGAAGCCGTGGATTTGCTGTATGTTCATAACCCCGAGCACTTT
CTGGCGGACATTCTGCTACGGCATGAGACGGGGGAAAGGAGCTTCGCGGA
CGACAAGGGTTTAGCAGCAGCCATGCAAGAAGAGCGTCACAAGCTTAAAG
ATCGCCTTGTTCGAGCGTTCGAAGCCCTTGAAGGTGCTGTGGCAAGAGGG
AAAATCCGGAAAGGCTACGGGGTGAGCAGTAATGGTTTTGGGCTTAGCTC
TAAGGAAGGGCTGCACCTCTCCTTGTCCATGGTTCTTGATGCAGCGGCCG
AGGGAGCCAAACGTGCGGGGAAAAATGCCCCCTCCCTGCGTGCGATTCAA
TTGCCCTTGAATCTCCTTGAGCCGGGCGGGTTGGTGGTAGCGGCGCAGGC
ACGAGCGAAGGGGATTGAAGTGTACGCGAATCGGCCACTGACGGCTGTGT
CACAGGGAGGGTTATATCGGCTAGTGAACAAGGCAGCAGCGGGTGGGGAG
CCACCGGAGGGATACATGGAAGCGTGTCGCACGGCTTTGGAGCTATTTAA
TCCCTCTTTTTTATTTGAGGGGAAGGCCGAGGAGGCATTGACGGAGGAGG
AGAAGGAGACGAGGGAAGGGTGTCGCATTATACAGGAGTTGATCCGAGAC
ATGAATAGGCAATTGACTTCATTCACATCGACCGAGTCTTACACCCAAGA
GTTGGAAAGGAGGATCATACCTTTGATTGCCTCGACGTTCGAGAGTTTGG
ATGAGAGCGCAGCTGATGCTTTGCAGGTGTTTTTTGTGAAGTATGGAGAG
ATGGTTAGGTACCACGCAGCGGTTCGGGCCGTGGAGGCTTGTAAAACGGC
GGGACACGTATTAGAGGAAGGGAAAGAGAGAGGGAGGGAGGGAGGCGGGT
TGTTGCACGAGTATGCGCTGAGGTGGTTGCTAGAGAAGATACCGAGGCAG
TTGAGCGGTGTTTTGGTGGGCATGCCGCAGGAGGCGTATGTGCATGATGT
CGTACGGATTGCAGAGGGGTGTGGGAGGGAGGGAGGATCGGAGAAGGGGA
GGAAATGA
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protein sequence of NO17G01970.1

>NO17G01970.1-protein ID=NO17G01970.1-protein|Name=NO17G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MAPASAAATAAAAIGIRRIGFGCARITPSPPHLQALAAALKHGIRLFDTA
PNYGHIGASERAVGQALAKHFQETGAECRDEVTVCTKFGYFQPAEGHARG
PERVSVGSKDEGGLQFSLHPEVMEHELKGSLERLQLEAVDLLYVHNPEHF
LADILLRHETGERSFADDKGLAAAMQEERHKLKDRLVRAFEALEGAVARG
KIRKGYGVSSNGFGLSSKEGLHLSLSMVLDAAAEGAKRAGKNAPSLRAIQ
LPLNLLEPGGLVVAAQARAKGIEVYANRPLTAVSQGGLYRLVNKAAAGGE
PPEGYMEACRTALELFNPSFLFEGKAEEALTEEEKETREGCRIIQELIRD
MNRQLTSFTSTESYTQELERRIIPLIASTFESLDESAADALQVFFVKYGE
MVRYHAAVRAVEACKTAGHVLEEGKERGREGGGLLHEYALRWLLEKIPRQ
LSGVLVGMPQEAYVHDVVRIAEGCGREGGSEKGRK*
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mRNA from alignment at chr17:561503..562960+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01970.1 ID=NO17G01970.1|Name=NO17G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp|location=Sequence derived from alignment at chr17:561503..562960+ (Nannochloropsis oceanica)
ATGGCCCCCGCATCGGCAGCAGCAACAGCAGCGGCAGCTATAGGCATCCG
CCGCATTGGCTTTGGCTGCGCCCGCATCACGCCCAGCCCGCCTCACCTCC
AAGCCCTTGCCGCTGCCCTCAAGCACGGCATTCGGCTCTTTGATACAGCA
CCTAACTATGGACATATCGGAGCTTCGGAGCGGGCGGTAGGACAAGCATT
GGCCAAACACTTTCAAGAGACAGGCGCCGAATGCCGGGACGAAGTAACTG
TCTGCACGAAATTTGGGTATTTCCAGCCGGCTGAAGGGCACGCGCGGGGG
CCAGAGCGCGTGTCGGTGGGGAGCAAGGACGAGGGTGGGTTGCAGTTTTC
ATTGCACCCAGAGGTGATGGAGCACGAATTGAAGGGCTCCTTGGAGCGCC
TCCAGCTCGAAGCCGTGGATTTGCTGTATGTTCATAACCCCGAGCACTTT
CTGGCGGACATTCTGCTACGGCATGAGACGGGGGAAAGGAGCTTCGCGGA
CGACAAGGGTTTAGCAGCAGCCATGCAAGAAGAGCGTCACAAGCTTAAAG
ATCGCCTTGTTCGAGCGTTCGAAGCCCTTGAAGGTGCTGTGGCAAGAGGG
AAAATCCGGAAAGGCTACGGGGTGAGCAGTAATGGTTTTGGGCTTAGCTC
TAAGGAAGGGCTGCACCTCTCCTTGTCCATGGTTCTTGATGCAGCGGCCG
AGGGAGCCAAACGTGCGGGGAAAAATGCCCCCTCCCTGCGTGCGATTCAA
TTGCCCTTGAATCTCCTTGAGCCGGGCGGGTTGGTGGTAGCGGCGCAGGC
ACGAGCGAAGGGGATTGAAGTGTACGCGAATCGGCCACTGACGGCTGTGT
CACAGGGAGGGTTATATCGGCTAGTGAACAAGGCAGCAGCGGGTGGGGAG
CCACCGGAGGGATACATGGAAGCGTGTCGCACGGCTTTGGAGCTATTTAA
TCCCTCTTTTTTATTTGAGGGGAAGGCCGAGGAGGCATTGACGGAGGAGG
AGAAGGAGACGAGGGAAGGGTGTCGCATTATACAGGAGTTGATCCGAGAC
ATGAATAGGCAATTGACTTCATTCACATCGACCGAGTCTTACACCCAAGA
GTTGGAAAGGAGGATCATACCTTTGATTGCCTCGACGTTCGAGAGTTTGG
ATGAGAGCGCAGCTGATGCTTTGCAGGTGTTTTTTGTGAAGTATGGAGAG
ATGGTTAGGTACCACGCAGCGGTTCGGGCCGTGGAGGCTTGTAAAACGGC
GGGACACGTATTAGAGGAAGGGAAAGAGAGAGGGAGGGAGGGAGGCGGGT
TGTTGCACGAGTATGCGCTGAGGTGGTTGCTAGAGAAGATACCGAGGCAG
TTGAGCGGTGTTTTGGTGGGCATGCCGCAGGAGGCGTATGTGCATGATGT
CGTACGGATTGCAGAGGGGTGTGGGAGGGAGGGAGGATCGGAGAAGGGGA
GGAAATGA
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Coding sequence (CDS) from alignment at chr17:561503..562960+

>NO17G01970.1 ID=NO17G01970.1|Name=NO17G01970.1|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at chr17:561503..562960+ (Nannochloropsis oceanica)
ATGGCCCCCGCATCGGCAGCAGCAACAGCAGCGGCAGCTATAGGCATCCG
CCGCATTGGCTTTGGCTGCGCCCGCATCACGCCCAGCCCGCCTCACCTCC
AAGCCCTTGCCGCTGCCCTCAAGCACGGCATTCGGCTCTTTGATACAGCA
CCTAACTATGGACATATCGGAGCTTCGGAGCGGGCGGTAGGACAAGCATT
GGCCAAACACTTTCAAGAGACAGGCGCCGAATGCCGGGACGAAGTAACTG
TCTGCACGAAATTTGGGTATTTCCAGCCGGCTGAAGGGCACGCGCGGGGG
CCAGAGCGCGTGTCGGTGGGGAGCAAGGACGAGGGTGGGTTGCAGTTTTC
ATTGCACCCAGAGGTGATGGAGCACGAATTGAAGGGCTCCTTGGAGCGCC
TCCAGCTCGAAGCCGTGGATTTGCTGTATGTTCATAACCCCGAGCACTTT
CTGGCGGACATTCTGCTACGGCATGAGACGGGGGAAAGGAGCTTCGCGGA
CGACAAGGGTTTAGCAGCAGCCATGCAAGAAGAGCGTCACAAGCTTAAAG
ATCGCCTTGTTCGAGCGTTCGAAGCCCTTGAAGGTGCTGTGGCAAGAGGG
AAAATCCGGAAAGGCTACGGGGTGAGCAGTAATGGTTTTGGGCTTAGCTC
TAAGGAAGGGCTGCACCTCTCCTTGTCCATGGTTCTTGATGCAGCGGCCG
AGGGAGCCAAACGTGCGGGGAAAAATGCCCCCTCCCTGCGTGCGATTCAA
TTGCCCTTGAATCTCCTTGAGCCGGGCGGGTTGGTGGTAGCGGCGCAGGC
ACGAGCGAAGGGGATTGAAGTGTACGCGAATCGGCCACTGACGGCTGTGT
CACAGGGAGGGTTATATCGGCTAGTGAACAAGGCAGCAGCGGGTGGGGAG
CCACCGGAGGGATACATGGAAGCGTGTCGCACGGCTTTGGAGCTATTTAA
TCCCTCTTTTTTATTTGAGGGGAAGGCCGAGGAGGCATTGACGGAGGAGG
AGAAGGAGACGAGGGAAGGGTGTCGCATTATACAGGAGTTGATCCGAGAC
ATGAATAGGCAATTGACTTCATTCACATCGACCGAGTCTTACACCCAAGA
GTTGGAAAGGAGGATCATACCTTTGATTGCCTCGACGTTCGAGAGTTTGG
ATGAGAGCGCAGCTGATGCTTTGCAGGTGTTTTTTGTGAAGTATGGAGAG
ATGGTTAGGTACCACGCAGCGGTTCGGGCCGTGGAGGCTTGTAAAACGGC
GGGACACGTATTAGAGGAAGGGAAAGAGAGAGGGAGGGAGGGAGGCGGGT
TGTTGCACGAGTATGCGCTGAGGTGGTTGCTAGAGAAGATACCGAGGCAG
TTGAGCGGTGTTTTGGTGGGCATGCCGCAGGAGGCGTATGTGCATGATGT
CGTACGGATTGCAGAGGGGTGTGGGAGGGAGGGAGGATCGGAGAAGGGGA
GGAAATGA
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Synonyms
Publications