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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr17 | genome | chr17:490021..493116 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G01690.2 vs.
Match: PLW12182.1 (hypothetical protein PCANC_17221 [Puccinia coronata var. avenae f. sp. avenae]; PLW47348.1 hypothetical protein PCASD_02620 [Puccinia coronata var. avenae f. sp. avenae]) HSP 1 Score: 335.9 bits (860), Expect = 1.300e-88 Identity = 178/283 (62.90%), Postives = 213/283 (75.27%), Query Frame = 0
Query: 8 KTLLSIKGFSEAKVEKIRSSARKLTGGNTSTFKTGTEVREQRKRCIKITTGAKAFDAILGGGVETGSITEAYGEFRTGKTQLSHTLAVTCQLGFEQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDPEATLDNIIVARAYASDQQCELIKPLAALIAEHGPFRLLIIDSIIALFRVDYSGRGELSERQQKLGQHLSALTRLCEDANLAILLVNQCTADPGAMSLFAPV-VKPVGGNVLAHASCTRLHLKKGRDNARVAKLVDSPSMPEAEAQFCITDGGLAD 290
K L +IKG SE KVEKI+ SA KL+G +FKTG++V R++ + ++TG+KA DA+LGGG+++ SITE YGEFR GKTQL HTL VT QL E GGG GK Y+DTEG FRPER+ IA+RFG+DPEA LDNIIV RA S+ Q ELI LAA AE G FRLLI+DSI+ALFRVD+SGRGELSERQQKL Q L+ LTR+ E+ NL I L NQ ADPGA S+FA KPVGG+VLAHA+ TR+ L+KGR + RVAKL DSP MPE EA + I GG+ D
Sbjct: 47 KQLTNIKGISEIKVEKIKDSASKLSG---PSFKTGSDVLVDREKILTLSTGSKAVDAMLGGGIQSQSITEVYGEFRCGKTQLCHTLCVTAQLPPEMGGGGGKAAYIDTEGTFRPERVRAIADRFGMDPEAVLDNIIVGRAANSEHQMELIVHLAAKFAEDGTFRLLIVDSIMALFRVDFSGRGELSERQQKLNQMLARLTRISEEFNLCIFLTNQVQADPGAASMFAGADKKPVGGHVLAHAASTRISLRKGRGDERVAKLCDSPDMPEGEASYKIATGGIED 326
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G01690.2 ID=NO17G01690.2|Name=NO17G01690.2|organism=Nannochloropsis oceanica|type=mRNA|length=2455bp GAAAATGCCGCCTTCGTCGTTCATTGCATCTTCTCTTCATGCGTCCATGC CTCCAAGTTGTGTGTATTGCCTTGACATGTATGACCCCGCACACACACCT GAGCGTAAATATCGCATCTACAATGCCTTATGTTGCCTTGTGGAAATGTT GGCGCTGGTTTTTGCAGACTTATCTCCCGATCACTCCTACATGAAAGAAT GCATCATATTTGCCTTCTTCTTTGCACCACACAGCCATACACACAAAGAC AAGTGCCATGCAACTCTCATGTGTTCCTTGTGTGCTCTCATACTCTGATT TCGCCCTGCATCGAATTTACCTGCGCACAGACACTCTCTTCTCCGAGTGC GCAAACAACAAATCATGGGTGGACAGCATCAAGCCGAGCGCCCCTCTGAT GCCTCCGACGACCAGCACGATATGGACGTGGACGACACGATGATCGGCAT TGGGGAGATCCAGAAACTAGGGGTCAATGCCGCCGGTATGTATTCATTTT CTTTCCTTCTTTACCCCTTTCCTTTTCCCTCCCTCCCTTTTCCCTCCTTC CCATCCCATCACCTACACGCCCCCATCCGTCTGCATCACCACAACCCCGC CACATCATGCATCCGGTATTTAGACTCCTTTCTCTTATTGCTTTTCACTC CCCCTCCCCCTCCCCTTGTCGCTGTGCATCACCATGACCCATCGGTGAGT GCCCCTCCCTCCTTTTATGTGTACCCTCCACCTCCCCCCTCTTTCCCGCC CTATAGCATTCCAATGCCACCTGTGATGCGTCATCACATTGCAGTTAGGC ATAGGCGGTACCAAAGCAGCTGTTTTATGGCGCCTTTTCCCTCCCCTATC TCCTCATCCAACCTTCCAATCCCATCCCGTCACATAACCCCCCCGTCCTG TCCTACCTGCCTGCACAACTACCCTACACTCTCCACGCGCGCATACACCC CTTTTCACTTCCCTCCCCCTCCTTCCTCTCTACCTCAAAGACATCGCTAA GCTCGTGGAGGCTGGCATAAGCACTTGTGGCATGGTCACGAAGGTCCCTC TCAAAACCTTGCTTTCGATCAAGGGCTTCTCGGAGGCCAAGGTCGAGAAG ATCCGCTCCAGCGCACGCAAGCTCACGGGTGGCAATACCAGCACCTTTAA GACGGGCACGGAGGTCCGCGAGCAGCGCAAACGGTGCATCAAGATCACCA CTGGGGCCAAGGCATTTGATGCCATCCTGGGCGGGGGGGTAGAGACGGGC TCTATTACCGAGGCCTATGGGGAGTTCCGCACGGGCAAGACTCAGCTCTC GCACACCCTGGCCGTGACGTGCCAGCTTGGGTTCGAGCAGGGAGGGGGCC AGGGGAAGTGCATCTACTTGGACACGGAAGGTAATTTCCGCCCGGAGCGG ATCGAGAAGATTGCAGAGCGGTTCGGACTAGACCCAGAGGCGACCTTGGA CAACATCATCGTGGCTCGGGCGTATGCCTCTGACCAGCAATGCGAGCTCA TAAAGCCCCTGGCAGCCCTGATTGCGGAGCACGGACCTTTCCGTCTGCTC ATCATTGATTCCATCATTGCACTCTTCCGTGTGGACTACTCCGGTCGCGG AGAGCTGTCCGAGCGTCAACAGAAGCTGGGCCAGCACCTGTCCGCGCTGA CCCGTCTCTGTGAAGATGCTAACCTGGCCATTCTGCTCGTGAACCAGTGC ACTGCGGATCCGGGTGCCATGTCGCTTTTCGCCCCCGTCGTCAAACCTGT CGGCGGTAACGTCCTCGCTCACGCCTCCTGTACGCGCTTGCACCTCAAAA AAGGCCGAGACAACGCCCGCGTGGCCAAGCTAGTCGACTCCCCTTCCATG CCAGAGGCGGAGGCACAGTTTTGCATCACCGATGGTGGATTGGCTGACGT TTAAGATAACGTAGCTCATGCGGTTATGTCGAAGGTGTGAAAAGAAGGTC AACAATATATATATATATATTATATATATATACACTCACATATATATATA TATAGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTATGTATTT GTGTGTGTGTGTGTTTTTAGTAGAGAGAGCGAGAATATAAAAAAAATATC GAAGATATTCGCCGGGTATAGATTGGACTAAATGACTCTTTATGGTGGGG AAGTAGACTAGGAGACACAATAGAAGCTGTATCAGGCTGTCAAGCAATGC GCCCGTATGCATGTAGAGGGGCAAAGTTCTTGGCTGACGTTACTTGCCCA ACCTTGTTTGTCTCCTTCCCCACCTTGTCAATTGAATGAATGTTTGATAT GTGCATGCATTGATTATGTGTGGAAGAGGAAGTGGTAAGAAAAAGAGCGT TCATGCGACTTACCGACTGAGAGAGGAAAGAAAAAGATGAGACAACAGTT CCAGTGCGCAGTGTGAAAAACGAAAGGCACCAGGAAGCGAAATACAGGCG CTAGG back to topprotein sequence of NO17G01690.2 >NO17G01690.2-protein ID=NO17G01690.2-protein|Name=NO17G01690.2|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp MVTKVPLKTLLSIKGFSEAKVEKIRSSARKLTGGNTSTFKTGTEVREQRK RCIKITTGAKAFDAILGGGVETGSITEAYGEFRTGKTQLSHTLAVTCQLG FEQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDPEATLDNIIVARAYAS DQQCELIKPLAALIAEHGPFRLLIIDSIIALFRVDYSGRGELSERQQKLG QHLSALTRLCEDANLAILLVNQCTADPGAMSLFAPVVKPVGGNVLAHASC TRLHLKKGRDNARVAKLVDSPSMPEAEAQFCITDGGLADV* back to topmRNA from alignment at chr17:490021..493116- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G01690.2 ID=NO17G01690.2|Name=NO17G01690.2|organism=Nannochloropsis oceanica|type=mRNA|length=3096bp|location=Sequence derived from alignment at chr17:490021..493116- (Nannochloropsis oceanica) GAAAATGCCGCCTTCGTCGTTCATTGCATCTTCTCTTCATGCGTCCATGC
CTCCAAGTTGTGTGTATTGCCTTGACATGTATGACCCCGCACACACACCT
GAGCGTAAATATCGCATCTACAATGCCTTATGTTGCCTTGTGGAAATGTT
GGCGCTGGTTTTTGCAGACTTATCTCCCGATCACTCCTACATGAAAGAAT
GCATCATATTTGCCTTCTTCTTTGCACCACACAGCCATACACACAAAGAC
AAGTGCCATGCAACTCTCATGTGTTCCTTGTGTGCTCTCATACTCTGATT
TCGCCCTGCATCGAATTTACCTGCGCACAGACACTCTCTTCTCCGAGTGC
GCAAACAACAAATCATGGGTGGACAGCATCAAGCCGAGCGCCCCTCTGAT
GCCTCCGACGACCAGCACGATATGGACGTGGACGACACGATGATCGGCAT
TGGGGAGATCCAGAAACTAGGGGTCAATGCCGCCGGTATGTATTCATTTT
CTTTCCTTCTTTACCCCTTTCCTTTTCCCTCCCTCCCTTTTCCCTCCTTC
CCATCCCATCACCTACACGCCCCCATCCGTCTGCATCACCACAACCCCGC
CACATCATGCATCCGGTATTTAGACTCCTTTCTCTTATTGCTTTTCACTC
CCCCTCCCCCTCCCCTTGTCGCTGTGCATCACCATGACCCATCGGTGAGT
GCCCCTCCCTCCTTTTATGTGTACCCTCCACCTCCCCCCTCTTTCCCGCC
CTATAGCATTCCAATGCCACCTGTGATGCGTCATCACATTGCAGTTAGGC
ATAGGCGGTACCAAAGCAGCTGTTTTATGGCGCCTTTTCCCTCCCCTATC
TCCTCATCCAACCTTCCAATCCCATCCCGTCACATAACCCCCCCGTCCTG
TCCTACCTGCCTGCACAACTACCCTACACTCTCCACGCGCGCATACACCC
CTTTTCACTTCCCTCCCCCTCCTTCCTCTCTACCTCAAAGACATCGCTAA
GCTCGTGGAGGCTGGCATAAGCACTTGTGGCATGGTCACGAAGGTCCCTC
TCAAAACCTTGCTTTCGATCAAGGGCTTCTCGGAGGCCAAGGTCGAGAAG
ATCCGCTCCAGCGCACGCAAGCTCACGGGTGGCAATACCAGCACCTTTAA
GACGGGCACGGAGGTCCGCGAGCAGCGCAAACGGTGCATCAAGATCACCA
CTGGGGCCAAGGTAGGTTAGGCGGATGAAAATGTTTACTCTACCTCCCTC
CATCTCTCCCTTCCTCCCTCTCCTCACTATGTAACAGGCATTTGATGCCA
TCCTGGGCGGGGGGGTAGAGACGGGCTCTATTACCGAGGCCTATGGGGAG
TTCCGCACGGGCAAGACTCAGCTCTCGCACACCCTGGCCGTGACGTGCCA
GCTTGGGTTCGAGCAGGGAGGGGGCCAGGGGAAGTGCATCTACTTGGACA
CGGAAGGTAATTTCCGCCCGGAGCGGATCGAGAAGATTGCAGAGCGGTTC
GGACTAGACCCAGAGGCGACCTTGGACAACATCATCGTGGCTCGGGCGTA
TGCCTCTGGTAGGTGATTGGTCGGCTTGCGAGTGCGGAGGGAGCGCAAGG
AGAGAGGGCGGGAGGTAGGGATTGAGTTGTACTTCCAACGCCTCGCTGGT
ATTGCTTCACGATCCTTTTTTTCCTCCTCCCTCCGACAACACGACAAAGC
CATCCTACCTGCTCTCTCTTGCTTCCTTATGCTCTCTTCCCCTCGTTCCT
TCCTGCCTTCCCCTCCTTCCTTTTCCCAGACCAGCAATGCGAGCTCATAA
AGCCCCTGGCAGCCCTGATTGCGGAGCACGGACCTTTCCGTCTGCTCATC
ATTGATTCCATCATTGCACTCTTCCGTGTGGACTACTCCGGTCGCGGAGG
TACGTCTTTGATTTTTCTCGTGTCTTTCCATCTCTCTGTCTTTGTCTCTC
TGTCGTAGACTCTCTCTCTCTTCTCCCCCCCCGCCCCCCCCCTCCCCCCC
TTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTACACTCTTTCTC
TCTCTTTCTCTCTCTTTCTCTCTCTTTCTCTCTCTTTCTCTCTCTCTCTC
TTACACTCTTTCTCTCACTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTTTCTCTTTCTTTCTCTCTCTATCTCTCTCTCACTCCCACTC
CTCAACTTTCCTCCCCTACATTCCCTCCGGTCTCCCCCTCCAGAGCTGTC
CGAGCGTCAACAGAAGCTGGGCCAGCACCTGTCCGCGCTGACCCGTCTCT
GTGAAGATGCTAACCTGGCCATTCTGCTCGTGAACCAGTGCACTGCGGAT
CCGGGTGCCATGTCGCTTTTCGCCCCCGTCGTCAAACCTGTCGGCGGTAA
CGTCCTCGCTCACGCCTCCTGTACGCGCTTGCACCTCAAAAAAGGCCGAG
ACAACGCCCGCGTGGCCAAGCTAGTCGACTCCCCTTCCATGCCAGAGGCG
GAGGCACAGTTTTGCATCACCGATGGTGGATTGGCTGACGTTTAAGATAA
CGTAGCTCATGCGGTTATGTCGAAGGTGTGAAAAGAAGGTCAACAATATA
TATATATATATTATATATATATACACTCACATATATATATATATAGTGTG
TGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTATGTATTTGTGTGTGTG
TGTGTTTTTAGTAGAGAGAGCGAGAATATAAAAAAAATATCGAAGATATT
CGCCGGGTATAGATTGGACTAAATGACTCTTTATGGTGGGGAAGTAGACT
AGGAGACACAATAGAAGCTGTATCAGGCTGTCAAGCAATGCGCCCGTATG
CATGTAGAGGGGCAAAGTTCTTGGCTGACGTTACTTGCCCAACCTTGTTT
GTCTCCTTCCCCACCTTGTCAATTGAATGAATGTTTGATATGTGCATGCA
TTGATTATGTGTGGAAGAGGAAGTGGTAAGAAAAAGAGCGTTCATGCGAC
TTACCGACTGAGAGAGGAAAGAAAAAGATGAGACAACAGTTCCAGTGCGC
AGTGTGAAAAACGAAAGGCACCAGGAAGCGAAATACAGGCGCTAGG back to topCoding sequence (CDS) from alignment at chr17:490021..493116- >NO17G01690.2 ID=NO17G01690.2|Name=NO17G01690.2|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at chr17:490021..493116- (Nannochloropsis oceanica) ATGGTCACGAAGGTCCCTCTCAAAACCTTGCTTTCGATCAAGGGCTTCTC GGAGGCCAAGGTCGAGAAGATCCGCTCCAGCGCACGCAAGCTCACGGGTG GCAATACCAGCACCTTTAAGACGGGCACGGAGGTCCGCGAGCAGCGCAAA CGGTGCATCAAGATCACCACTGGGGCCAAGGCATTTGATGCCATCCTGGG CGGGGGGGTAGAGACGGGCTCTATTACCGAGGCCTATGGGGAGTTCCGCA CGGGCAAGACTCAGCTCTCGCACACCCTGGCCGTGACGTGCCAGCTTGGG TTCGAGCAGGGAGGGGGCCAGGGGAAGTGCATCTACTTGGACACGGAAGG TAATTTCCGCCCGGAGCGGATCGAGAAGATTGCAGAGCGGTTCGGACTAG ACCCAGAGGCGACCTTGGACAACATCATCGTGGCTCGGGCGTATGCCTCT GACCAGCAATGCGAGCTCATAAAGCCCCTGGCAGCCCTGATTGCGGAGCA CGGACCTTTCCGTCTGCTCATCATTGATTCCATCATTGCACTCTTCCGTG TGGACTACTCCGGTCGCGGAGAGCTGTCCGAGCGTCAACAGAAGCTGGGC CAGCACCTGTCCGCGCTGACCCGTCTCTGTGAAGATGCTAACCTGGCCAT TCTGCTCGTGAACCAGTGCACTGCGGATCCGGGTGCCATGTCGCTTTTCG CCCCCGTCGTCAAACCTGTCGGCGGTAACGTCCTCGCTCACGCCTCCTGT ACGCGCTTGCACCTCAAAAAAGGCCGAGACAACGCCCGCGTGGCCAAGCT AGTCGACTCCCCTTCCATGCCAGAGGCGGAGGCACAGTTTTGCATCACCG ATGGTGGATTGGCTGACGTTTAA back to top
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