NO17G01690.2, NO17G01690.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01690.2
Unique NameNO17G01690.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2455
Alignment locationchr17:490021..493116 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:490021..493116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01690.2 vs.
Match: PLW12182.1 (hypothetical protein PCANC_17221 [Puccinia coronata var. avenae f. sp. avenae]; PLW47348.1 hypothetical protein PCASD_02620 [Puccinia coronata var. avenae f. sp. avenae])

HSP 1 Score: 335.9 bits (860), Expect = 1.300e-88
Identity = 178/283 (62.90%), Postives = 213/283 (75.27%), Query Frame = 0 
Query:    8 KTLLSIKGFSEAKVEKIRSSARKLTGGNTSTFKTGTEVREQRKRCIKITTGAKAFDAILGGGVETGSITEAYGEFRTGKTQLSHTLAVTCQLGFEQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDPEATLDNIIVARAYASDQQCELIKPLAALIAEHGPFRLLIIDSIIALFRVDYSGRGELSERQQKLGQHLSALTRLCEDANLAILLVNQCTADPGAMSLFAPV-VKPVGGNVLAHASCTRLHLKKGRDNARVAKLVDSPSMPEAEAQFCITDGGLAD 290
            K L +IKG SE KVEKI+ SA KL+G    +FKTG++V   R++ + ++TG+KA DA+LGGG+++ SITE YGEFR GKTQL HTL VT QL  E GGG GK  Y+DTEG FRPER+  IA+RFG+DPEA LDNIIV RA  S+ Q ELI  LAA  AE G FRLLI+DSI+ALFRVD+SGRGELSERQQKL Q L+ LTR+ E+ NL I L NQ  ADPGA S+FA    KPVGG+VLAHA+ TR+ L+KGR + RVAKL DSP MPE EA + I  GG+ D
Sbjct:   47 KQLTNIKGISEIKVEKIKDSASKLSG---PSFKTGSDVLVDREKILTLSTGSKAVDAMLGGGIQSQSITEVYGEFRCGKTQLCHTLCVTAQLPPEMGGGGGKAAYIDTEGTFRPERVRAIADRFGMDPEAVLDNIIVGRAANSEHQMELIVHLAAKFAEDGTFRLLIVDSIMALFRVDFSGRGELSERQQKLNQMLARLTRISEEFNLCIFLTNQVQADPGAASMFAGADKKPVGGHVLAHAASTRISLRKGRGDERVAKLCDSPDMPEGEASYKIATGGIED 326
The following BLAST results are available for this feature:
BLAST of NO17G01690.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
PLW12182.11.300e-8862.90hypothetical protein PCANC_17221 [Puccinia coronat... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01690NO17G01690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01690.2NO17G01690.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01690.2.cds1NO17G01690.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01690.2.cds2NO17G01690.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01690.2.cds3NO17G01690.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01690.2.cds4NO17G01690.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01690.2 ID=NO17G01690.2|Name=NO17G01690.2|organism=Nannochloropsis oceanica|type=mRNA|length=2455bp
GAAAATGCCGCCTTCGTCGTTCATTGCATCTTCTCTTCATGCGTCCATGC
CTCCAAGTTGTGTGTATTGCCTTGACATGTATGACCCCGCACACACACCT
GAGCGTAAATATCGCATCTACAATGCCTTATGTTGCCTTGTGGAAATGTT
GGCGCTGGTTTTTGCAGACTTATCTCCCGATCACTCCTACATGAAAGAAT
GCATCATATTTGCCTTCTTCTTTGCACCACACAGCCATACACACAAAGAC
AAGTGCCATGCAACTCTCATGTGTTCCTTGTGTGCTCTCATACTCTGATT
TCGCCCTGCATCGAATTTACCTGCGCACAGACACTCTCTTCTCCGAGTGC
GCAAACAACAAATCATGGGTGGACAGCATCAAGCCGAGCGCCCCTCTGAT
GCCTCCGACGACCAGCACGATATGGACGTGGACGACACGATGATCGGCAT
TGGGGAGATCCAGAAACTAGGGGTCAATGCCGCCGGTATGTATTCATTTT
CTTTCCTTCTTTACCCCTTTCCTTTTCCCTCCCTCCCTTTTCCCTCCTTC
CCATCCCATCACCTACACGCCCCCATCCGTCTGCATCACCACAACCCCGC
CACATCATGCATCCGGTATTTAGACTCCTTTCTCTTATTGCTTTTCACTC
CCCCTCCCCCTCCCCTTGTCGCTGTGCATCACCATGACCCATCGGTGAGT
GCCCCTCCCTCCTTTTATGTGTACCCTCCACCTCCCCCCTCTTTCCCGCC
CTATAGCATTCCAATGCCACCTGTGATGCGTCATCACATTGCAGTTAGGC
ATAGGCGGTACCAAAGCAGCTGTTTTATGGCGCCTTTTCCCTCCCCTATC
TCCTCATCCAACCTTCCAATCCCATCCCGTCACATAACCCCCCCGTCCTG
TCCTACCTGCCTGCACAACTACCCTACACTCTCCACGCGCGCATACACCC
CTTTTCACTTCCCTCCCCCTCCTTCCTCTCTACCTCAAAGACATCGCTAA
GCTCGTGGAGGCTGGCATAAGCACTTGTGGCATGGTCACGAAGGTCCCTC
TCAAAACCTTGCTTTCGATCAAGGGCTTCTCGGAGGCCAAGGTCGAGAAG
ATCCGCTCCAGCGCACGCAAGCTCACGGGTGGCAATACCAGCACCTTTAA
GACGGGCACGGAGGTCCGCGAGCAGCGCAAACGGTGCATCAAGATCACCA
CTGGGGCCAAGGCATTTGATGCCATCCTGGGCGGGGGGGTAGAGACGGGC
TCTATTACCGAGGCCTATGGGGAGTTCCGCACGGGCAAGACTCAGCTCTC
GCACACCCTGGCCGTGACGTGCCAGCTTGGGTTCGAGCAGGGAGGGGGCC
AGGGGAAGTGCATCTACTTGGACACGGAAGGTAATTTCCGCCCGGAGCGG
ATCGAGAAGATTGCAGAGCGGTTCGGACTAGACCCAGAGGCGACCTTGGA
CAACATCATCGTGGCTCGGGCGTATGCCTCTGACCAGCAATGCGAGCTCA
TAAAGCCCCTGGCAGCCCTGATTGCGGAGCACGGACCTTTCCGTCTGCTC
ATCATTGATTCCATCATTGCACTCTTCCGTGTGGACTACTCCGGTCGCGG
AGAGCTGTCCGAGCGTCAACAGAAGCTGGGCCAGCACCTGTCCGCGCTGA
CCCGTCTCTGTGAAGATGCTAACCTGGCCATTCTGCTCGTGAACCAGTGC
ACTGCGGATCCGGGTGCCATGTCGCTTTTCGCCCCCGTCGTCAAACCTGT
CGGCGGTAACGTCCTCGCTCACGCCTCCTGTACGCGCTTGCACCTCAAAA
AAGGCCGAGACAACGCCCGCGTGGCCAAGCTAGTCGACTCCCCTTCCATG
CCAGAGGCGGAGGCACAGTTTTGCATCACCGATGGTGGATTGGCTGACGT
TTAAGATAACGTAGCTCATGCGGTTATGTCGAAGGTGTGAAAAGAAGGTC
AACAATATATATATATATATTATATATATATACACTCACATATATATATA
TATAGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTATGTATTT
GTGTGTGTGTGTGTTTTTAGTAGAGAGAGCGAGAATATAAAAAAAATATC
GAAGATATTCGCCGGGTATAGATTGGACTAAATGACTCTTTATGGTGGGG
AAGTAGACTAGGAGACACAATAGAAGCTGTATCAGGCTGTCAAGCAATGC
GCCCGTATGCATGTAGAGGGGCAAAGTTCTTGGCTGACGTTACTTGCCCA
ACCTTGTTTGTCTCCTTCCCCACCTTGTCAATTGAATGAATGTTTGATAT
GTGCATGCATTGATTATGTGTGGAAGAGGAAGTGGTAAGAAAAAGAGCGT
TCATGCGACTTACCGACTGAGAGAGGAAAGAAAAAGATGAGACAACAGTT
CCAGTGCGCAGTGTGAAAAACGAAAGGCACCAGGAAGCGAAATACAGGCG
CTAGG
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protein sequence of NO17G01690.2

>NO17G01690.2-protein ID=NO17G01690.2-protein|Name=NO17G01690.2|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MVTKVPLKTLLSIKGFSEAKVEKIRSSARKLTGGNTSTFKTGTEVREQRK
RCIKITTGAKAFDAILGGGVETGSITEAYGEFRTGKTQLSHTLAVTCQLG
FEQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDPEATLDNIIVARAYAS
DQQCELIKPLAALIAEHGPFRLLIIDSIIALFRVDYSGRGELSERQQKLG
QHLSALTRLCEDANLAILLVNQCTADPGAMSLFAPVVKPVGGNVLAHASC
TRLHLKKGRDNARVAKLVDSPSMPEAEAQFCITDGGLADV*
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mRNA from alignment at chr17:490021..493116-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01690.2 ID=NO17G01690.2|Name=NO17G01690.2|organism=Nannochloropsis oceanica|type=mRNA|length=3096bp|location=Sequence derived from alignment at chr17:490021..493116- (Nannochloropsis oceanica)
GAAAATGCCGCCTTCGTCGTTCATTGCATCTTCTCTTCATGCGTCCATGC
CTCCAAGTTGTGTGTATTGCCTTGACATGTATGACCCCGCACACACACCT
GAGCGTAAATATCGCATCTACAATGCCTTATGTTGCCTTGTGGAAATGTT
GGCGCTGGTTTTTGCAGACTTATCTCCCGATCACTCCTACATGAAAGAAT
GCATCATATTTGCCTTCTTCTTTGCACCACACAGCCATACACACAAAGAC
AAGTGCCATGCAACTCTCATGTGTTCCTTGTGTGCTCTCATACTCTGATT
TCGCCCTGCATCGAATTTACCTGCGCACAGACACTCTCTTCTCCGAGTGC
GCAAACAACAAATCATGGGTGGACAGCATCAAGCCGAGCGCCCCTCTGAT
GCCTCCGACGACCAGCACGATATGGACGTGGACGACACGATGATCGGCAT
TGGGGAGATCCAGAAACTAGGGGTCAATGCCGCCGGTATGTATTCATTTT
CTTTCCTTCTTTACCCCTTTCCTTTTCCCTCCCTCCCTTTTCCCTCCTTC
CCATCCCATCACCTACACGCCCCCATCCGTCTGCATCACCACAACCCCGC
CACATCATGCATCCGGTATTTAGACTCCTTTCTCTTATTGCTTTTCACTC
CCCCTCCCCCTCCCCTTGTCGCTGTGCATCACCATGACCCATCGGTGAGT
GCCCCTCCCTCCTTTTATGTGTACCCTCCACCTCCCCCCTCTTTCCCGCC
CTATAGCATTCCAATGCCACCTGTGATGCGTCATCACATTGCAGTTAGGC
ATAGGCGGTACCAAAGCAGCTGTTTTATGGCGCCTTTTCCCTCCCCTATC
TCCTCATCCAACCTTCCAATCCCATCCCGTCACATAACCCCCCCGTCCTG
TCCTACCTGCCTGCACAACTACCCTACACTCTCCACGCGCGCATACACCC
CTTTTCACTTCCCTCCCCCTCCTTCCTCTCTACCTCAAAGACATCGCTAA
GCTCGTGGAGGCTGGCATAAGCACTTGTGGCATGGTCACGAAGGTCCCTC
TCAAAACCTTGCTTTCGATCAAGGGCTTCTCGGAGGCCAAGGTCGAGAAG
ATCCGCTCCAGCGCACGCAAGCTCACGGGTGGCAATACCAGCACCTTTAA
GACGGGCACGGAGGTCCGCGAGCAGCGCAAACGGTGCATCAAGATCACCA
CTGGGGCCAAGGTAGGTTAGGCGGATGAAAATGTTTACTCTACCTCCCTC
CATCTCTCCCTTCCTCCCTCTCCTCACTATGTAACAGGCATTTGATGCCA
TCCTGGGCGGGGGGGTAGAGACGGGCTCTATTACCGAGGCCTATGGGGAG
TTCCGCACGGGCAAGACTCAGCTCTCGCACACCCTGGCCGTGACGTGCCA
GCTTGGGTTCGAGCAGGGAGGGGGCCAGGGGAAGTGCATCTACTTGGACA
CGGAAGGTAATTTCCGCCCGGAGCGGATCGAGAAGATTGCAGAGCGGTTC
GGACTAGACCCAGAGGCGACCTTGGACAACATCATCGTGGCTCGGGCGTA
TGCCTCTGGTAGGTGATTGGTCGGCTTGCGAGTGCGGAGGGAGCGCAAGG
AGAGAGGGCGGGAGGTAGGGATTGAGTTGTACTTCCAACGCCTCGCTGGT
ATTGCTTCACGATCCTTTTTTTCCTCCTCCCTCCGACAACACGACAAAGC
CATCCTACCTGCTCTCTCTTGCTTCCTTATGCTCTCTTCCCCTCGTTCCT
TCCTGCCTTCCCCTCCTTCCTTTTCCCAGACCAGCAATGCGAGCTCATAA
AGCCCCTGGCAGCCCTGATTGCGGAGCACGGACCTTTCCGTCTGCTCATC
ATTGATTCCATCATTGCACTCTTCCGTGTGGACTACTCCGGTCGCGGAGG
TACGTCTTTGATTTTTCTCGTGTCTTTCCATCTCTCTGTCTTTGTCTCTC
TGTCGTAGACTCTCTCTCTCTTCTCCCCCCCCGCCCCCCCCCTCCCCCCC
TTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTACACTCTTTCTC
TCTCTTTCTCTCTCTTTCTCTCTCTTTCTCTCTCTTTCTCTCTCTCTCTC
TTACACTCTTTCTCTCACTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTTTCTCTTTCTTTCTCTCTCTATCTCTCTCTCACTCCCACTC
CTCAACTTTCCTCCCCTACATTCCCTCCGGTCTCCCCCTCCAGAGCTGTC
CGAGCGTCAACAGAAGCTGGGCCAGCACCTGTCCGCGCTGACCCGTCTCT
GTGAAGATGCTAACCTGGCCATTCTGCTCGTGAACCAGTGCACTGCGGAT
CCGGGTGCCATGTCGCTTTTCGCCCCCGTCGTCAAACCTGTCGGCGGTAA
CGTCCTCGCTCACGCCTCCTGTACGCGCTTGCACCTCAAAAAAGGCCGAG
ACAACGCCCGCGTGGCCAAGCTAGTCGACTCCCCTTCCATGCCAGAGGCG
GAGGCACAGTTTTGCATCACCGATGGTGGATTGGCTGACGTTTAAGATAA
CGTAGCTCATGCGGTTATGTCGAAGGTGTGAAAAGAAGGTCAACAATATA
TATATATATATTATATATATATACACTCACATATATATATATATAGTGTG
TGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTATGTATTTGTGTGTGTG
TGTGTTTTTAGTAGAGAGAGCGAGAATATAAAAAAAATATCGAAGATATT
CGCCGGGTATAGATTGGACTAAATGACTCTTTATGGTGGGGAAGTAGACT
AGGAGACACAATAGAAGCTGTATCAGGCTGTCAAGCAATGCGCCCGTATG
CATGTAGAGGGGCAAAGTTCTTGGCTGACGTTACTTGCCCAACCTTGTTT
GTCTCCTTCCCCACCTTGTCAATTGAATGAATGTTTGATATGTGCATGCA
TTGATTATGTGTGGAAGAGGAAGTGGTAAGAAAAAGAGCGTTCATGCGAC
TTACCGACTGAGAGAGGAAAGAAAAAGATGAGACAACAGTTCCAGTGCGC
AGTGTGAAAAACGAAAGGCACCAGGAAGCGAAATACAGGCGCTAGG
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Coding sequence (CDS) from alignment at chr17:490021..493116-

>NO17G01690.2 ID=NO17G01690.2|Name=NO17G01690.2|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at chr17:490021..493116- (Nannochloropsis oceanica)
ATGGTCACGAAGGTCCCTCTCAAAACCTTGCTTTCGATCAAGGGCTTCTC
GGAGGCCAAGGTCGAGAAGATCCGCTCCAGCGCACGCAAGCTCACGGGTG
GCAATACCAGCACCTTTAAGACGGGCACGGAGGTCCGCGAGCAGCGCAAA
CGGTGCATCAAGATCACCACTGGGGCCAAGGCATTTGATGCCATCCTGGG
CGGGGGGGTAGAGACGGGCTCTATTACCGAGGCCTATGGGGAGTTCCGCA
CGGGCAAGACTCAGCTCTCGCACACCCTGGCCGTGACGTGCCAGCTTGGG
TTCGAGCAGGGAGGGGGCCAGGGGAAGTGCATCTACTTGGACACGGAAGG
TAATTTCCGCCCGGAGCGGATCGAGAAGATTGCAGAGCGGTTCGGACTAG
ACCCAGAGGCGACCTTGGACAACATCATCGTGGCTCGGGCGTATGCCTCT
GACCAGCAATGCGAGCTCATAAAGCCCCTGGCAGCCCTGATTGCGGAGCA
CGGACCTTTCCGTCTGCTCATCATTGATTCCATCATTGCACTCTTCCGTG
TGGACTACTCCGGTCGCGGAGAGCTGTCCGAGCGTCAACAGAAGCTGGGC
CAGCACCTGTCCGCGCTGACCCGTCTCTGTGAAGATGCTAACCTGGCCAT
TCTGCTCGTGAACCAGTGCACTGCGGATCCGGGTGCCATGTCGCTTTTCG
CCCCCGTCGTCAAACCTGTCGGCGGTAACGTCCTCGCTCACGCCTCCTGT
ACGCGCTTGCACCTCAAAAAAGGCCGAGACAACGCCCGCGTGGCCAAGCT
AGTCGACTCCCCTTCCATGCCAGAGGCGGAGGCACAGTTTTGCATCACCG
ATGGTGGATTGGCTGACGTTTAA
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Synonyms
Publications