NO17G01690.1, NO17G01690.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO17G01690.1
Unique Name	NO17G01690.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1950
Alignment location	chr17:490021..493116 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr17	genome	chr17:490021..493116 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO17G01690.1 vs.
Match: OAV99797.1 (hypothetical protein PTTG_06217, partial [Puccinia triticina 1-1 BBBD Race 1])

HSP 1 Score: 354.8 bits (909), Expect = 3.100e-94
Identity = 190/316 (60.13%), Postives = 230/316 (72.78%), Query Frame = 0

Query:   29 IGEIQKLGVNAADIAKLVEAGISTCGMVTKVPLKTLLSIKGFSEAKVEKIRSSARKLTGGNTSTFKTGTEVREQRKRCIKITTGAKAFDAILGGGVETGSITEAYGEFRTGKTQLSHTLAVTCQLGFEQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDPEATLDNIIVARAYASDQQCELIKPLAALIAEHGPFRLLIIDSIIALFRVDYSGRGELSERQQKLGQHLSALTRLCEDANLAILLVNQCTADPGAMSLFAPV-VKPVGGNVLAHASCTRLHLKKGRDNARVAKLVDSPSMPEAEAQFCITDGGLAD 344
            +  +Q+LG++A DI KL + G +T   V     K L S+KG SE KVEKI+ SA KL+G     FKTG++V   R++ I ++TG+KA DA+LGGG+++ SITE YGEFR GKTQ+ HTL VT QL  E GGG GK  Y+DTEG FRPERI  IA+RFG+DPEA LDNIIV RA  S+ Q ELI  LAA  AE G FRLLI+DSI+ALFRVD+SGRGELSERQQKL Q L+ LTR+ E+ NL I L NQ  ADPGA S+FA    KPVGG+VLAHA+ TR+ L+KGR + RVAKL DSP MPE EA + I  GG+ D
Sbjct:   52 VDALQELGISAQDIKKLKDGGFATIKAVLTASRKQLTSLKGISEIKVEKIKDSASKLSG---PLFKTGSDVLVDREKIITLSTGSKAVDAMLGGGIQSQSITEVYGEFRCGKTQICHTLCVTAQLPPEMGGGGGKAAYIDTEGTFRPERIRTIADRFGMDPEAVLDNIIVGRAANSEHQMELIVHLAAKFAEDGTFRLLIVDSIMALFRVDFSGRGELSERQQKLNQMLARLTRISEEFNLCIFLTNQVQADPGAASMFAGADKKPVGGHVLAHAASTRISLRKGRGDERVAKLCDSPDMPEGEASYKIATGGIED 364

The following BLAST results are available for this feature:

BLAST of NO17G01690.1 vs.

BLAST of NO17G01690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
OAV99797.1	3.100e-94	60.13	hypothetical protein PTTG_06217, partial [Puccinia...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO17G01690	NO17G01690	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO17G01690.1	NO17G01690.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO17G01690.1.cds1	NO17G01690.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G01690.1.cds2	NO17G01690.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G01690.1.cds3	NO17G01690.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G01690.1.cds4	NO17G01690.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G01690.1.cds5	NO17G01690.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr17:490021..493116-
coding sequence from alignment at chr17:490021..493116-

mRNA sequence

>NO17G01690.1 ID=NO17G01690.1|Name=NO17G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1950bp
GAAAATGCCGCCTTCGTCGTTCATTGCATCTTCTCTTCATGCGTCCATGC
CTCCAAGTTGTGTGTATTGCCTTGACATGTATGACCCCGCACACACACCT
GAGCGTAAATATCGCATCTACAATGCCTTATGTTGCCTTGTGGAAATGTT
GGCGCTGGTTTTTGCAGACTTATCTCCCGATCACTCCTACATGAAAGAAT
GCATCATATTTGCCTTCTTCTTTGCACCACACAGCCATACACACAAAGAC
AAGTGCCATGCAACTCTCATGTGTTCCTTGTGTGCTCTCATACTCTGATT
TCGCCCTGCATCGAATTTACCTGCGCACAGACACTCTCTTCTCCGAGTGC
GCAAACAACAAATCATGGGTGGACAGCATCAAGCCGAGCGCCCCTCTGAT
GCCTCCGACGACCAGCACGATATGGACGTGGACGACACGATGATCGGCAT
TGGGGAGATCCAGAAACTAGGGGTCAATGCCGCCGACATCGCTAAGCTCG
TGGAGGCTGGCATAAGCACTTGTGGCATGGTCACGAAGGTCCCTCTCAAA
ACCTTGCTTTCGATCAAGGGCTTCTCGGAGGCCAAGGTCGAGAAGATCCG
CTCCAGCGCACGCAAGCTCACGGGTGGCAATACCAGCACCTTTAAGACGG
GCACGGAGGTCCGCGAGCAGCGCAAACGGTGCATCAAGATCACCACTGGG
GCCAAGGCATTTGATGCCATCCTGGGCGGGGGGGTAGAGACGGGCTCTAT
TACCGAGGCCTATGGGGAGTTCCGCACGGGCAAGACTCAGCTCTCGCACA
CCCTGGCCGTGACGTGCCAGCTTGGGTTCGAGCAGGGAGGGGGCCAGGGG
AAGTGCATCTACTTGGACACGGAAGGTAATTTCCGCCCGGAGCGGATCGA
GAAGATTGCAGAGCGGTTCGGACTAGACCCAGAGGCGACCTTGGACAACA
TCATCGTGGCTCGGGCGTATGCCTCTGACCAGCAATGCGAGCTCATAAAG
CCCCTGGCAGCCCTGATTGCGGAGCACGGACCTTTCCGTCTGCTCATCAT
TGATTCCATCATTGCACTCTTCCGTGTGGACTACTCCGGTCGCGGAGAGC
TGTCCGAGCGTCAACAGAAGCTGGGCCAGCACCTGTCCGCGCTGACCCGT
CTCTGTGAAGATGCTAACCTGGCCATTCTGCTCGTGAACCAGTGCACTGC
GGATCCGGGTGCCATGTCGCTTTTCGCCCCCGTCGTCAAACCTGTCGGCG
GTAACGTCCTCGCTCACGCCTCCTGTACGCGCTTGCACCTCAAAAAAGGC
CGAGACAACGCCCGCGTGGCCAAGCTAGTCGACTCCCCTTCCATGCCAGA
GGCGGAGGCACAGTTTTGCATCACCGATGGTGGATTGGCTGACGTTTAAG
ATAACGTAGCTCATGCGGTTATGTCGAAGGTGTGAAAAGAAGGTCAACAA
TATATATATATATATTATATATATATACACTCACATATATATATATATAG
TGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTATGTATTTGTGTG
TGTGTGTGTTTTTAGTAGAGAGAGCGAGAATATAAAAAAAATATCGAAGA
TATTCGCCGGGTATAGATTGGACTAAATGACTCTTTATGGTGGGGAAGTA
GACTAGGAGACACAATAGAAGCTGTATCAGGCTGTCAAGCAATGCGCCCG
TATGCATGTAGAGGGGCAAAGTTCTTGGCTGACGTTACTTGCCCAACCTT
GTTTGTCTCCTTCCCCACCTTGTCAATTGAATGAATGTTTGATATGTGCA
TGCATTGATTATGTGTGGAAGAGGAAGTGGTAAGAAAAAGAGCGTTCATG
CGACTTACCGACTGAGAGAGGAAAGAAAAAGATGAGACAACAGTTCCAGT
GCGCAGTGTGAAAAACGAAAGGCACCAGGAAGCGAAATACAGGCGCTAGG

protein sequence of NO17G01690.1

>NO17G01690.1-protein ID=NO17G01690.1-protein|Name=NO17G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MGGQHQAERPSDASDDQHDMDVDDTMIGIGEIQKLGVNAADIAKLVEAGI
STCGMVTKVPLKTLLSIKGFSEAKVEKIRSSARKLTGGNTSTFKTGTEVR
EQRKRCIKITTGAKAFDAILGGGVETGSITEAYGEFRTGKTQLSHTLAVT
CQLGFEQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDPEATLDNIIVAR
AYASDQQCELIKPLAALIAEHGPFRLLIIDSIIALFRVDYSGRGELSERQ
QKLGQHLSALTRLCEDANLAILLVNQCTADPGAMSLFAPVVKPVGGNVLA
HASCTRLHLKKGRDNARVAKLVDSPSMPEAEAQFCITDGGLADV*

mRNA from alignment at chr17:490021..493116-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO17G01690.1 ID=NO17G01690.1|Name=NO17G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=3096bp|location=Sequence derived from alignment at chr17:490021..493116- (Nannochloropsis oceanica)
GAAAATGCCGCCTTCGTCGTTCATTGCATCTTCTCTTCATGCGTCCATGC
CTCCAAGTTGTGTGTATTGCCTTGACATGTATGACCCCGCACACACACCT
GAGCGTAAATATCGCATCTACAATGCCTTATGTTGCCTTGTGGAAATGTT
GGCGCTGGTTTTTGCAGACTTATCTCCCGATCACTCCTACATGAAAGAAT
GCATCATATTTGCCTTCTTCTTTGCACCACACAGCCATACACACAAAGAC
AAGTGCCATGCAACTCTCATGTGTTCCTTGTGTGCTCTCATACTCTGATT
TCGCCCTGCATCGAATTTACCTGCGCACAGACACTCTCTTCTCCGAGTGC
GCAAACAACAAATCATGGGTGGACAGCATCAAGCCGAGCGCCCCTCTGAT
GCCTCCGACGACCAGCACGATATGGACGTGGACGACACGATGATCGGCAT
TGGGGAGATCCAGAAACTAGGGGTCAATGCCGCCGGTATGTATTCATTTT
CTTTCCTTCTTTACCCCTTTCCTTTTCCCTCCCTCCCTTTTCCCTCCTTC
CCATCCCATCACCTACACGCCCCCATCCGTCTGCATCACCACAACCCCGC
CACATCATGCATCCGGTATTTAGACTCCTTTCTCTTATTGCTTTTCACTC
CCCCTCCCCCTCCCCTTGTCGCTGTGCATCACCATGACCCATCGGTGAGT
GCCCCTCCCTCCTTTTATGTGTACCCTCCACCTCCCCCCTCTTTCCCGCC
CTATAGCATTCCAATGCCACCTGTGATGCGTCATCACATTGCAGTTAGGC
ATAGGCGGTACCAAAGCAGCTGTTTTATGGCGCCTTTTCCCTCCCCTATC
TCCTCATCCAACCTTCCAATCCCATCCCGTCACATAACCCCCCCGTCCTG
TCCTACCTGCCTGCACAACTACCCTACACTCTCCACGCGCGCATACACCC
CTTTTCACTTCCCTCCCCCTCCTTCCTCTCTACCTCAAAGACATCGCTAA
GCTCGTGGAGGCTGGCATAAGCACTTGTGGCATGGTCACGAAGGTCCCTC
TCAAAACCTTGCTTTCGATCAAGGGCTTCTCGGAGGCCAAGGTCGAGAAG
ATCCGCTCCAGCGCACGCAAGCTCACGGGTGGCAATACCAGCACCTTTAA
GACGGGCACGGAGGTCCGCGAGCAGCGCAAACGGTGCATCAAGATCACCA
CTGGGGCCAAGGTAGGTTAGGCGGATGAAAATGTTTACTCTACCTCCCTC
CATCTCTCCCTTCCTCCCTCTCCTCACTATGTAACAGGCATTTGATGCCA
TCCTGGGCGGGGGGGTAGAGACGGGCTCTATTACCGAGGCCTATGGGGAG
TTCCGCACGGGCAAGACTCAGCTCTCGCACACCCTGGCCGTGACGTGCCA
GCTTGGGTTCGAGCAGGGAGGGGGCCAGGGGAAGTGCATCTACTTGGACA
CGGAAGGTAATTTCCGCCCGGAGCGGATCGAGAAGATTGCAGAGCGGTTC
GGACTAGACCCAGAGGCGACCTTGGACAACATCATCGTGGCTCGGGCGTA
TGCCTCTGGTAGGTGATTGGTCGGCTTGCGAGTGCGGAGGGAGCGCAAGG
AGAGAGGGCGGGAGGTAGGGATTGAGTTGTACTTCCAACGCCTCGCTGGT
ATTGCTTCACGATCCTTTTTTTCCTCCTCCCTCCGACAACACGACAAAGC
CATCCTACCTGCTCTCTCTTGCTTCCTTATGCTCTCTTCCCCTCGTTCCT
TCCTGCCTTCCCCTCCTTCCTTTTCCCAGACCAGCAATGCGAGCTCATAA
AGCCCCTGGCAGCCCTGATTGCGGAGCACGGACCTTTCCGTCTGCTCATC
ATTGATTCCATCATTGCACTCTTCCGTGTGGACTACTCCGGTCGCGGAGG
TACGTCTTTGATTTTTCTCGTGTCTTTCCATCTCTCTGTCTTTGTCTCTC
TGTCGTAGACTCTCTCTCTCTTCTCCCCCCCCGCCCCCCCCCTCCCCCCC
TTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTACACTCTTTCTC
TCTCTTTCTCTCTCTTTCTCTCTCTTTCTCTCTCTTTCTCTCTCTCTCTC
TTACACTCTTTCTCTCACTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTTTCTCTTTCTTTCTCTCTCTATCTCTCTCTCACTCCCACTC
CTCAACTTTCCTCCCCTACATTCCCTCCGGTCTCCCCCTCCAGAGCTGTC
CGAGCGTCAACAGAAGCTGGGCCAGCACCTGTCCGCGCTGACCCGTCTCT
GTGAAGATGCTAACCTGGCCATTCTGCTCGTGAACCAGTGCACTGCGGAT
CCGGGTGCCATGTCGCTTTTCGCCCCCGTCGTCAAACCTGTCGGCGGTAA
CGTCCTCGCTCACGCCTCCTGTACGCGCTTGCACCTCAAAAAAGGCCGAG
ACAACGCCCGCGTGGCCAAGCTAGTCGACTCCCCTTCCATGCCAGAGGCG
GAGGCACAGTTTTGCATCACCGATGGTGGATTGGCTGACGTTTAAGATAA
CGTAGCTCATGCGGTTATGTCGAAGGTGTGAAAAGAAGGTCAACAATATA
TATATATATATTATATATATATACACTCACATATATATATATATAGTGTG
TGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTATGTATTTGTGTGTGTG
TGTGTTTTTAGTAGAGAGAGCGAGAATATAAAAAAAATATCGAAGATATT
CGCCGGGTATAGATTGGACTAAATGACTCTTTATGGTGGGGAAGTAGACT
AGGAGACACAATAGAAGCTGTATCAGGCTGTCAAGCAATGCGCCCGTATG
CATGTAGAGGGGCAAAGTTCTTGGCTGACGTTACTTGCCCAACCTTGTTT
GTCTCCTTCCCCACCTTGTCAATTGAATGAATGTTTGATATGTGCATGCA
TTGATTATGTGTGGAAGAGGAAGTGGTAAGAAAAAGAGCGTTCATGCGAC
TTACCGACTGAGAGAGGAAAGAAAAAGATGAGACAACAGTTCCAGTGCGC
AGTGTGAAAAACGAAAGGCACCAGGAAGCGAAATACAGGCGCTAGG

Coding sequence (CDS) from alignment at chr17:490021..493116-

>NO17G01690.1 ID=NO17G01690.1|Name=NO17G01690.1|organism=Nannochloropsis oceanica|type=CDS|length=1035bp|location=Sequence derived from alignment at chr17:490021..493116- (Nannochloropsis oceanica)
ATGGGTGGACAGCATCAAGCCGAGCGCCCCTCTGATGCCTCCGACGACCA
GCACGATATGGACGTGGACGACACGATGATCGGCATTGGGGAGATCCAGA
AACTAGGGGTCAATGCCGCCGACATCGCTAAGCTCGTGGAGGCTGGCATA
AGCACTTGTGGCATGGTCACGAAGGTCCCTCTCAAAACCTTGCTTTCGAT
CAAGGGCTTCTCGGAGGCCAAGGTCGAGAAGATCCGCTCCAGCGCACGCA
AGCTCACGGGTGGCAATACCAGCACCTTTAAGACGGGCACGGAGGTCCGC
GAGCAGCGCAAACGGTGCATCAAGATCACCACTGGGGCCAAGGCATTTGA
TGCCATCCTGGGCGGGGGGGTAGAGACGGGCTCTATTACCGAGGCCTATG
GGGAGTTCCGCACGGGCAAGACTCAGCTCTCGCACACCCTGGCCGTGACG
TGCCAGCTTGGGTTCGAGCAGGGAGGGGGCCAGGGGAAGTGCATCTACTT
GGACACGGAAGGTAATTTCCGCCCGGAGCGGATCGAGAAGATTGCAGAGC
GGTTCGGACTAGACCCAGAGGCGACCTTGGACAACATCATCGTGGCTCGG
GCGTATGCCTCTGACCAGCAATGCGAGCTCATAAAGCCCCTGGCAGCCCT
GATTGCGGAGCACGGACCTTTCCGTCTGCTCATCATTGATTCCATCATTG
CACTCTTCCGTGTGGACTACTCCGGTCGCGGAGAGCTGTCCGAGCGTCAA
CAGAAGCTGGGCCAGCACCTGTCCGCGCTGACCCGTCTCTGTGAAGATGC
TAACCTGGCCATTCTGCTCGTGAACCAGTGCACTGCGGATCCGGGTGCCA
TGTCGCTTTTCGCCCCCGTCGTCAAACCTGTCGGCGGTAACGTCCTCGCT
CACGCCTCCTGTACGCGCTTGCACCTCAAAAAAGGCCGAGACAACGCCCG
CGTGGCCAAGCTAGTCGACTCCCCTTCCATGCCAGAGGCGGAGGCACAGT
TTTGCATCACCGATGGTGGATTGGCTGACGTTTAA

Synonyms

Publications