NO17G01640.1, NO17G01640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01640.1
Unique NameNO17G01640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2129
Alignment locationchr17:480768..482896 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:480768..482896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01640.1 vs.
Match: EWM24265.1 (Paraquat-inducible protein A [Nannochloropsis gaditana])

HSP 1 Score: 540.8 bits (1392), Expect = 5.500e-150
Identity = 297/497 (59.76%), Postives = 353/497 (71.03%), Query Frame = 0 
Query:   19 SASRPSLFRSHATVPCLVRYGLPLLFLGNMGLLLYSNLTLGASVHARVYSGKGNDVELPVLYNVSLAGSIDDMWRSKAYFMSTLIAVCSGAWPHFKLVISLLCWFLDEGYLPSKLRARVLILTYALQKFSHVETMTLVILMTAFSFTARLPNHVDWGVWAYVTPQPGFYAFLGGLIISMLLSRVALYYDHFTRASAAAATARTRGPSFLMLAESDGEAAVEGAVDNEEESNAPSLSWTSFSSVGKLLNDEDEEDEVNTGPA-----AWWEVLKTYC-VVGLLVCFGLGLILPAFTFHFQGLAGWILDNITEMSPDSSTSLRTESVLSLGRGIAEASNTPNGAGIRFLQASFFFFVVGAPLGCHTLLVALLLLPPKFSRWLTMPTEILYAWSAPDVLFVSMVAATLEMHLFVRFVIGDRCDGLNALLRELMDDELAGDDKCFDVVTSLKPGCYVLGASSLLLFVSGFFIIRDATRDTAEFSDATAGSEGFRDHEKVER 510
            SA  PSL RSH T+P  +RYGLPLL +GN  LLLYSNLTLGASV+ARVY G+G  +ELPVLYNVSLAGSI DMW+S AY+M+TLIA+CSGAWPH KL++ LLCW + E +L    R R L +TY LQKFSHVET+TLVILMTAFSFTARLPNH  WGVW YV PQPGF+AFLGGLI+SM LSRV LYYD      AA +   +  PS  M  +     +      +E+   A  +    F S  K+  D    DE  T        + W  + T C V+ + VC  +GL+LPAF+F F+GL GWILDN+T+ SPDSS SLRT S LSLG  I  AS+   G GI FLQASFFFFVVGAP+ C TLLVALL+L P+ SR L MP EILYAWSAPDVLF+SMV +T EM+LFVRFVIGDRCD +NALLRE+MDD+LAGDDKCFDVVT+LKPGC++LG SSLL  V+GF ++R   R     +D        RD E+++R
Sbjct:   61 SAPHPSLLRSHVTLPATIRYGLPLLLIGNTALLLYSNLTLGASVYARVYDGQGRTMELPVLYNVSLAGSIKDMWQSGAYWMATLIAICSGAWPHVKLLLCLLCWTVGEKHLSPCTRRRALKVTYFLQKFSHVETITLVILMTAFSFTARLPNHESWGVWTYVAPQPGFFAFLGGLILSMFLSRVTLYYDQAWH--AALSCEESSAPSTPMECDEQAHGS-----SSEDCGKARCMINERFLS-NKVRFDCCGSDEPLTSVGGSLEHSMWREIPTVCGVLCIGVCLIMGLVLPAFSFQFKGLTGWILDNVTQDSPDSSASLRTMSALSLGEQI-PASSESKGIGIFFLQASFFFFVVGAPISCLTLLVALLILKPRESRKLVMPAEILYAWSAPDVLFISMVVSTWEMYLFVRFVIGDRCDAVNALLREIMDDQLAGDDKCFDVVTTLKPGCFILGVSSLLFLVAGFLVMRKVKRMVKVHADVFP----HRDTERLQR 544
The following BLAST results are available for this feature:
BLAST of NO17G01640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24265.15.500e-15059.76Paraquat-inducible protein A [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01640NO17G01640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01640.1NO17G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01640.1.cds1NO17G01640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01640.1 ID=NO17G01640.1|Name=NO17G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=2129bp
ACCGCAGACAGAGGTGGCCGTGACATTGGGTACTGGTTCGGAAGGGAGGT
GGAAGTGGTGGCGGCGAGACACGAGACGGCGCCCCAAAAAGTACATTTTA
TTACGGCCTCATAATGGAAGCAGTCGGACTTGGGGCCTCGGAGTATAGCA
TCGCACCCTTACGGCCCTCTGCGTCGAGGCCCTCGTTGTTTCGCAGCCAT
GCGACAGTCCCGTGCCTGGTACGTTACGGGTTGCCCTTGCTTTTTCTGGG
GAACATGGGACTGCTACTTTATTCAAACCTAACGCTGGGGGCGTCGGTGC
ATGCGAGAGTCTACAGCGGGAAAGGCAACGACGTGGAGTTACCCGTCCTC
TACAACGTCAGTTTGGCAGGTTCCATTGACGATATGTGGCGGAGTAAGGC
TTACTTCATGTCGACTCTCATTGCTGTGTGCTCGGGCGCCTGGCCGCATT
TCAAGCTTGTCATCTCCCTGTTGTGCTGGTTTTTGGACGAAGGTTACCTT
CCATCGAAACTCCGTGCACGTGTGTTGATCTTGACTTATGCTCTTCAAAA
GTTCAGTCATGTCGAGACCATGACGTTGGTCATTCTCATGACCGCTTTTA
GTTTCACAGCCCGCCTGCCTAATCACGTGGACTGGGGTGTGTGGGCGTAT
GTGACGCCGCAGCCGGGGTTCTACGCCTTCCTTGGCGGCTTAATCATATC
CATGCTTCTGAGCCGAGTGGCGCTGTATTACGATCACTTCACCCGCGCGT
CTGCCGCAGCTGCAACGGCAAGGACGCGCGGCCCCTCCTTTTTGATGCTG
GCCGAAAGCGACGGTGAAGCGGCGGTGGAGGGGGCTGTAGACAATGAGGA
GGAGTCTAACGCGCCATCCTTATCGTGGACATCGTTCTCCTCGGTCGGAA
AACTACTCAACGATGAAGATGAAGAAGATGAAGTGAATACGGGACCTGCA
GCCTGGTGGGAAGTTTTAAAAACGTACTGTGTGGTGGGCCTGTTGGTCTG
CTTTGGATTAGGGCTGATACTGCCTGCATTTACTTTCCATTTCCAGGGCC
TTGCAGGATGGATTTTGGACAATATCACAGAGATGTCGCCCGATTCGTCC
ACTTCCTTGCGAACGGAGTCGGTCTTGTCTTTGGGCCGAGGGATTGCGGA
AGCCTCCAACACACCCAATGGAGCCGGCATTCGCTTTCTTCAAGCGTCCT
TTTTCTTCTTTGTTGTGGGGGCCCCATTGGGCTGTCACACATTGCTTGTG
GCGTTGCTGTTGCTGCCGCCCAAGTTCAGTCGATGGCTGACGATGCCTAC
AGAAATTTTGTATGCCTGGTCAGCTCCCGATGTACTTTTTGTGAGCATGG
TGGCTGCGACTTTGGAAATGCATTTGTTTGTCCGTTTTGTGATAGGAGAC
CGCTGCGACGGGTTGAACGCGCTTCTCCGGGAGTTAATGGACGACGAATT
AGCAGGTGATGACAAATGTTTCGATGTCGTGACTTCCTTAAAACCAGGCT
GCTATGTACTGGGGGCAAGCTCCTTACTCTTATTCGTGTCAGGCTTTTTC
ATCATTCGCGACGCGACTCGGGACACTGCAGAGTTTTCAGATGCAACAGC
GGGAAGTGAGGGTTTCAGAGATCACGAGAAAGTAGAGCGGGATTGGAGAC
GACGCTGCCGTGACTCGCAGAATAATGGCACTGCCTCTACTTATTCGACA
TCCTTGTCTCGGTCGTCGATGGAAGACTGCCGTGAATCGCAGCAACAGAG
GGTGTCGCTGCTGTTACCTCTCACACAGCCGTTGTCGCCGGACGATGGGC
ACGCGGGAGTGATGGAAAGAAAAAAAGAGCATGGGTGGGAGGAGAACGAA
GAGTCGCCACGGGGCATGGATAAGTGGTTTCGAAGTTGGGGAGCACGACG
CGAGCGACCACTACCAAGATCGATGCAAGGCCTTGGCGCACCCGACAAAT
ATACATGATTATCGGTACTTTATCGGCGCCCTTTCTTACCTATTTTAGAC
AGATGAAAATACCGTAGACGTGTAATGTAAGGACGCGATAAATCAATCAT
GTGGAAACGTACACAGTGCGAAAGTAACATAGATGAAAGGAAGGTAGCAA
CTAAGAATATATATATATATGTATGTGTG
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protein sequence of NO17G01640.1

>NO17G01640.1-protein ID=NO17G01640.1-protein|Name=NO17G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=615bp
MEAVGLGASEYSIAPLRPSASRPSLFRSHATVPCLVRYGLPLLFLGNMGL
LLYSNLTLGASVHARVYSGKGNDVELPVLYNVSLAGSIDDMWRSKAYFMS
TLIAVCSGAWPHFKLVISLLCWFLDEGYLPSKLRARVLILTYALQKFSHV
ETMTLVILMTAFSFTARLPNHVDWGVWAYVTPQPGFYAFLGGLIISMLLS
RVALYYDHFTRASAAAATARTRGPSFLMLAESDGEAAVEGAVDNEEESNA
PSLSWTSFSSVGKLLNDEDEEDEVNTGPAAWWEVLKTYCVVGLLVCFGLG
LILPAFTFHFQGLAGWILDNITEMSPDSSTSLRTESVLSLGRGIAEASNT
PNGAGIRFLQASFFFFVVGAPLGCHTLLVALLLLPPKFSRWLTMPTEILY
AWSAPDVLFVSMVAATLEMHLFVRFVIGDRCDGLNALLRELMDDELAGDD
KCFDVVTSLKPGCYVLGASSLLLFVSGFFIIRDATRDTAEFSDATAGSEG
FRDHEKVERDWRRRCRDSQNNGTASTYSTSLSRSSMEDCRESQQQRVSLL
LPLTQPLSPDDGHAGVMERKKEHGWEENEESPRGMDKWFRSWGARRERPL
PRSMQGLGAPDKYT*
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mRNA from alignment at chr17:480768..482896+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01640.1 ID=NO17G01640.1|Name=NO17G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=2129bp|location=Sequence derived from alignment at chr17:480768..482896+ (Nannochloropsis oceanica)
ACCGCAGACAGAGGTGGCCGTGACATTGGGTACTGGTTCGGAAGGGAGGT
GGAAGTGGTGGCGGCGAGACACGAGACGGCGCCCCAAAAAGTACATTTTA
TTACGGCCTCATAATGGAAGCAGTCGGACTTGGGGCCTCGGAGTATAGCA
TCGCACCCTTACGGCCCTCTGCGTCGAGGCCCTCGTTGTTTCGCAGCCAT
GCGACAGTCCCGTGCCTGGTACGTTACGGGTTGCCCTTGCTTTTTCTGGG
GAACATGGGACTGCTACTTTATTCAAACCTAACGCTGGGGGCGTCGGTGC
ATGCGAGAGTCTACAGCGGGAAAGGCAACGACGTGGAGTTACCCGTCCTC
TACAACGTCAGTTTGGCAGGTTCCATTGACGATATGTGGCGGAGTAAGGC
TTACTTCATGTCGACTCTCATTGCTGTGTGCTCGGGCGCCTGGCCGCATT
TCAAGCTTGTCATCTCCCTGTTGTGCTGGTTTTTGGACGAAGGTTACCTT
CCATCGAAACTCCGTGCACGTGTGTTGATCTTGACTTATGCTCTTCAAAA
GTTCAGTCATGTCGAGACCATGACGTTGGTCATTCTCATGACCGCTTTTA
GTTTCACAGCCCGCCTGCCTAATCACGTGGACTGGGGTGTGTGGGCGTAT
GTGACGCCGCAGCCGGGGTTCTACGCCTTCCTTGGCGGCTTAATCATATC
CATGCTTCTGAGCCGAGTGGCGCTGTATTACGATCACTTCACCCGCGCGT
CTGCCGCAGCTGCAACGGCAAGGACGCGCGGCCCCTCCTTTTTGATGCTG
GCCGAAAGCGACGGTGAAGCGGCGGTGGAGGGGGCTGTAGACAATGAGGA
GGAGTCTAACGCGCCATCCTTATCGTGGACATCGTTCTCCTCGGTCGGAA
AACTACTCAACGATGAAGATGAAGAAGATGAAGTGAATACGGGACCTGCA
GCCTGGTGGGAAGTTTTAAAAACGTACTGTGTGGTGGGCCTGTTGGTCTG
CTTTGGATTAGGGCTGATACTGCCTGCATTTACTTTCCATTTCCAGGGCC
TTGCAGGATGGATTTTGGACAATATCACAGAGATGTCGCCCGATTCGTCC
ACTTCCTTGCGAACGGAGTCGGTCTTGTCTTTGGGCCGAGGGATTGCGGA
AGCCTCCAACACACCCAATGGAGCCGGCATTCGCTTTCTTCAAGCGTCCT
TTTTCTTCTTTGTTGTGGGGGCCCCATTGGGCTGTCACACATTGCTTGTG
GCGTTGCTGTTGCTGCCGCCCAAGTTCAGTCGATGGCTGACGATGCCTAC
AGAAATTTTGTATGCCTGGTCAGCTCCCGATGTACTTTTTGTGAGCATGG
TGGCTGCGACTTTGGAAATGCATTTGTTTGTCCGTTTTGTGATAGGAGAC
CGCTGCGACGGGTTGAACGCGCTTCTCCGGGAGTTAATGGACGACGAATT
AGCAGGTGATGACAAATGTTTCGATGTCGTGACTTCCTTAAAACCAGGCT
GCTATGTACTGGGGGCAAGCTCCTTACTCTTATTCGTGTCAGGCTTTTTC
ATCATTCGCGACGCGACTCGGGACACTGCAGAGTTTTCAGATGCAACAGC
GGGAAGTGAGGGTTTCAGAGATCACGAGAAAGTAGAGCGGGATTGGAGAC
GACGCTGCCGTGACTCGCAGAATAATGGCACTGCCTCTACTTATTCGACA
TCCTTGTCTCGGTCGTCGATGGAAGACTGCCGTGAATCGCAGCAACAGAG
GGTGTCGCTGCTGTTACCTCTCACACAGCCGTTGTCGCCGGACGATGGGC
ACGCGGGAGTGATGGAAAGAAAAAAAGAGCATGGGTGGGAGGAGAACGAA
GAGTCGCCACGGGGCATGGATAAGTGGTTTCGAAGTTGGGGAGCACGACG
CGAGCGACCACTACCAAGATCGATGCAAGGCCTTGGCGCACCCGACAAAT
ATACATGATTATCGGTACTTTATCGGCGCCCTTTCTTACCTATTTTAGAC
AGATGAAAATACCGTAGACGTGTAATGTAAGGACGCGATAAATCAATCAT
GTGGAAACGTACACAGTGCGAAAGTAACATAGATGAAAGGAAGGTAGCAA
CTAAGAATATATATATATATGTATGTGTG
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Coding sequence (CDS) from alignment at chr17:480768..482896+

>NO17G01640.1 ID=NO17G01640.1|Name=NO17G01640.1|organism=Nannochloropsis oceanica|type=CDS|length=1845bp|location=Sequence derived from alignment at chr17:480768..482896+ (Nannochloropsis oceanica)
ATGGAAGCAGTCGGACTTGGGGCCTCGGAGTATAGCATCGCACCCTTACG
GCCCTCTGCGTCGAGGCCCTCGTTGTTTCGCAGCCATGCGACAGTCCCGT
GCCTGGTACGTTACGGGTTGCCCTTGCTTTTTCTGGGGAACATGGGACTG
CTACTTTATTCAAACCTAACGCTGGGGGCGTCGGTGCATGCGAGAGTCTA
CAGCGGGAAAGGCAACGACGTGGAGTTACCCGTCCTCTACAACGTCAGTT
TGGCAGGTTCCATTGACGATATGTGGCGGAGTAAGGCTTACTTCATGTCG
ACTCTCATTGCTGTGTGCTCGGGCGCCTGGCCGCATTTCAAGCTTGTCAT
CTCCCTGTTGTGCTGGTTTTTGGACGAAGGTTACCTTCCATCGAAACTCC
GTGCACGTGTGTTGATCTTGACTTATGCTCTTCAAAAGTTCAGTCATGTC
GAGACCATGACGTTGGTCATTCTCATGACCGCTTTTAGTTTCACAGCCCG
CCTGCCTAATCACGTGGACTGGGGTGTGTGGGCGTATGTGACGCCGCAGC
CGGGGTTCTACGCCTTCCTTGGCGGCTTAATCATATCCATGCTTCTGAGC
CGAGTGGCGCTGTATTACGATCACTTCACCCGCGCGTCTGCCGCAGCTGC
AACGGCAAGGACGCGCGGCCCCTCCTTTTTGATGCTGGCCGAAAGCGACG
GTGAAGCGGCGGTGGAGGGGGCTGTAGACAATGAGGAGGAGTCTAACGCG
CCATCCTTATCGTGGACATCGTTCTCCTCGGTCGGAAAACTACTCAACGA
TGAAGATGAAGAAGATGAAGTGAATACGGGACCTGCAGCCTGGTGGGAAG
TTTTAAAAACGTACTGTGTGGTGGGCCTGTTGGTCTGCTTTGGATTAGGG
CTGATACTGCCTGCATTTACTTTCCATTTCCAGGGCCTTGCAGGATGGAT
TTTGGACAATATCACAGAGATGTCGCCCGATTCGTCCACTTCCTTGCGAA
CGGAGTCGGTCTTGTCTTTGGGCCGAGGGATTGCGGAAGCCTCCAACACA
CCCAATGGAGCCGGCATTCGCTTTCTTCAAGCGTCCTTTTTCTTCTTTGT
TGTGGGGGCCCCATTGGGCTGTCACACATTGCTTGTGGCGTTGCTGTTGC
TGCCGCCCAAGTTCAGTCGATGGCTGACGATGCCTACAGAAATTTTGTAT
GCCTGGTCAGCTCCCGATGTACTTTTTGTGAGCATGGTGGCTGCGACTTT
GGAAATGCATTTGTTTGTCCGTTTTGTGATAGGAGACCGCTGCGACGGGT
TGAACGCGCTTCTCCGGGAGTTAATGGACGACGAATTAGCAGGTGATGAC
AAATGTTTCGATGTCGTGACTTCCTTAAAACCAGGCTGCTATGTACTGGG
GGCAAGCTCCTTACTCTTATTCGTGTCAGGCTTTTTCATCATTCGCGACG
CGACTCGGGACACTGCAGAGTTTTCAGATGCAACAGCGGGAAGTGAGGGT
TTCAGAGATCACGAGAAAGTAGAGCGGGATTGGAGACGACGCTGCCGTGA
CTCGCAGAATAATGGCACTGCCTCTACTTATTCGACATCCTTGTCTCGGT
CGTCGATGGAAGACTGCCGTGAATCGCAGCAACAGAGGGTGTCGCTGCTG
TTACCTCTCACACAGCCGTTGTCGCCGGACGATGGGCACGCGGGAGTGAT
GGAAAGAAAAAAAGAGCATGGGTGGGAGGAGAACGAAGAGTCGCCACGGG
GCATGGATAAGTGGTTTCGAAGTTGGGGAGCACGACGCGAGCGACCACTA
CCAAGATCGATGCAAGGCCTTGGCGCACCCGACAAATATACATGA
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Synonyms
Publications