NO17G01620.6, NO17G01620.6 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01620.6
Unique NameNO17G01620.6
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1191
Alignment locationchr17:476764..478183 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:476764..478183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01620.6 vs.
Match: EWM24275.1 (dna-directed rna polymerase ii 19 kda polypeptide [Nannochloropsis gaditana])

HSP 1 Score: 299.3 bits (765), Expect = 7.900e-78
Identity = 143/151 (94.70%), Postives = 149/151 (98.68%), Query Frame = 0 
Query:   24 RRRLTQMMEGTLEPDLGFVIALVGLEDQHIRPGKIEYETGQVEVLVKFTVMLFRPFRNEILDAQVTTVTEMGFFADAGPVQGIYVNKHQMPQDYGFDAQDNVWRTSDMEVEIRPGCGVRMRVVGVDITPGRMNVVGSIMDDFTGLISGDTD 175
            +RRLTQMMEGTLEPDLGFVIALV L+DQHIRPGKIEYETG+VEV VKFTVMLFRPFRNEILDAQVTTVT+MGFFADAGPVQGIYVNKHQMPQDYGFDAQDNVWRTSDMEVEIRPGCGVRMRVVGVDITPGRMNVVGSIMDD+TGLISG+TD
Sbjct:   27 KRRLTQMMEGTLEPDLGFVIALVALDDQHIRPGKIEYETGEVEVWVKFTVMLFRPFRNEILDAQVTTVTDMGFFADAGPVQGIYVNKHQMPQDYGFDAQDNVWRTSDMEVEIRPGCGVRMRVVGVDITPGRMNVVGSIMDDYTGLISGETD 177
The following BLAST results are available for this feature:
BLAST of NO17G01620.6 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24275.17.900e-7894.70dna-directed rna polymerase ii 19 kda polypeptide ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01620NO17G01620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01620.6NO17G01620.6-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01620.6.cds1NO17G01620.6.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01620.6.cds2NO17G01620.6.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01620.6 ID=NO17G01620.6|Name=NO17G01620.6|organism=Nannochloropsis oceanica|type=mRNA|length=1191bp
CAGGCTTCGGCACGGGACAGCAGGCCCCCACGCTCCACCACACCAAGCCA
CCATTCCCAAAACTTTGTTCTATCCGTGGCAGCCAAACTAGCCATTCCCG
CCCCGCTGCACTCCTCCGTTGCACAGACATCATGTTTTATCTGGTAACTA
TCTACATTGCTTCCCCTCCGTTGCACAGCCATCATGTTTTATCCGGTAAC
TATCTACGTTGCTTTGAAAAGGTCCCTTTAGAAATCACTTCATCAGCCCC
GCAACCTCGTTCCTCAACATACCCACAGAAAACCTTGGAAAAGGACTTCA
TGCTAGAGCCCAAAGACCTGGGCCCTAACCTCAAGGAAACCATTAAGTAT
GTACTGAATATCATCTACATTATCGATACATGAAATGGCGAAGGGAGACG
TCTGTGGGGTGGCTTGTTTGGAGTGTTCGTGAAAGTCCCGGGAAGTGTGG
GGTGACGTGAATGGGGTAGAGCTAGGCGCTATTTGTTTCTGCTTGGCGTG
GTGGAAATCTGAGCGACTGGGACTTGCAAAGCGCGTGTGGGAAGGAGAGT
CTTGGATGCATGTGCCGTCTTTTTGAAACGTCTTACATACAAATAACTCC
TGCCTTCCTTTCCCACTCCATTCCCTCAAGGCGGCGGCTGACACAAATGA
TGGAGGGAACACTGGAACCGGACCTGGGCTTCGTGATTGCCTTGGTAGGC
TTAGAGGACCAGCATATTCGGCCTGGAAAGATCGAGTACGAGACGGGGCA
GGTTGAGGTATTGGTTAAATTTACGGTAATGCTGTTTCGGCCTTTCCGCA
ACGAGATTCTGGACGCCCAAGTAACAACAGTAACGGAAATGGGCTTCTTT
GCCGACGCTGGGCCTGTACAGGGTATTTATGTGAACAAGCACCAGATGCC
CCAAGATTACGGGTTCGATGCTCAGGATAATGTATGGCGGACGTCGGATA
TGGAGGTGGAGATCAGACCAGGGTGCGGGGTGCGGATGCGGGTGGTGGGC
GTGGATATCACACCGGGACGGATGAACGTCGTCGGTTCGATCATGGACGA
TTTTACTGGCCTCATCAGTGGAGACACTGACTAAATGACGCGAGATGGCG
TCGACGACAGCGGGGAATGGTTATGTACATTAAAGAAAAGGCGAAGGGAG
GGTCAGCTCAAAGAATGAAATCCTTAGAAACTACACAAGCG
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protein sequence of NO17G01620.6

>NO17G01620.6-protein ID=NO17G01620.6-protein|Name=NO17G01620.6|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MCRLFETSYIQITPAFLSHSIPSRRRLTQMMEGTLEPDLGFVIALVGLED
QHIRPGKIEYETGQVEVLVKFTVMLFRPFRNEILDAQVTTVTEMGFFADA
GPVQGIYVNKHQMPQDYGFDAQDNVWRTSDMEVEIRPGCGVRMRVVGVDI
TPGRMNVVGSIMDDFTGLISGDTD*
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mRNA from alignment at chr17:476764..478183-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01620.6 ID=NO17G01620.6|Name=NO17G01620.6|organism=Nannochloropsis oceanica|type=mRNA|length=1420bp|location=Sequence derived from alignment at chr17:476764..478183- (Nannochloropsis oceanica)
CAGGCTTCGGCACGGGACAGCAGGCCCCCACGCTCCACCACACCAAGCCA
CCATTCCCAAAACTTTGTTCTATCCGTGGCAGCCAAACTAGCCATTCCCG
CCCCGCTGCACTCCTCCGTTGCACAGACATCATGTTTTATCTGGTAACTA
TCTACATTGCTTCCCCTCCGTTGCACAGCCATCATGTTTTATCCGGTAAC
TATCTACGTTGCTTTGAAAAGGTCCCTTTAGAAATCACTTCATCAGCCCC
GCAACCTCGTTCCTCAACATACCCACAGAAAACCTTGGAAAAGGACTTCA
TGCTAGAGCCCAAAGACCTGGGCCCTAACCTCAAGGAAACCATTAAGTAT
GTACTGAATATCATCTACATTATCGATACATGAAATGGCGAAGGGAGACG
TCTGTGGGGTGGCTTGTTTGGAGTGTTCGTGAAAGTCCCGGGAAGTGTGG
GGTGACGTGAATGGGGTAGAGCTAGGCGCTATTTGTTTCTGCTTGGCGTG
GTGGAAATCTGAGCGACTGGGACTTGCAAAGCGCGTGTGGGAAGGAGAGT
CTTGGATGCATGTGCCGTCTTTTTGAAACGTCTTACATACAAATAACTCC
TGCCTTCCTTTCCCACTCCATTCCCTCAAGGCGGCGGCTGACACAAATGA
TGGAGGGAACACTGGAACCGGACCTGGGCTTCGTGATTGCCTTGGTAGGC
TTAGAGGACCAGCATATTCGGCCTGGAAAGATCGAGTACGAGACGGGGCA
GGTTGAGGTATTGGTTAAATTTACGGTAATGCTGTTTCGGCCTTTCCGCA
ACGAGATTCTGGACGCCCAAGTAACAACAGTAACGGAAATGGGCTTCTTT
GCCGACGCTGGGCCTGTACAGGGTATTTATGTGAACAAGCACCAGATGCC
CCAAGATTACGGGTTCGATGCTCAGGATAATGTATGGCGGACGTCGGATA
TGGAGGTGGAGATCAGACCAGGGTGCGGGGTGCGGATGCGGGTGGTGGGC
GTGGATATCACACCGGGACGGATGGTACGCACGGTTGAGGCAGGGGTTTG
GAGGGATAAAATGTGCATCAGATAAAGTTCTTTCGGAATCAGCGGATAGA
TCGGCGGGCAGGAATGGAGATGTGTCTGTCTGTAGGAAGAACGGGAGGCC
CCAAACTATTCCTTCTTTAACTCGGAAGCTGCCTTGCACTCCAACAAAAG
CTTCCTCTCACGCGCCATTCACATATTCCTCCCACACCTTACTCCTTCCC
TAGAACGTCGTCGGTTCGATCATGGACGATTTTACTGGCCTCATCAGTGG
AGACACTGACTAAATGACGCGAGATGGCGTCGACGACAGCGGGGAATGGT
TATGTACATTAAAGAAAAGGCGAAGGGAGGGTCAGCTCAAAGAATGAAAT
CCTTAGAAACTACACAAGCG
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Coding sequence (CDS) from alignment at chr17:476764..478183-

>NO17G01620.6 ID=NO17G01620.6|Name=NO17G01620.6|organism=Nannochloropsis oceanica|type=CDS|length=525bp|location=Sequence derived from alignment at chr17:476764..478183- (Nannochloropsis oceanica)
ATGTGCCGTCTTTTTGAAACGTCTTACATACAAATAACTCCTGCCTTCCT
TTCCCACTCCATTCCCTCAAGGCGGCGGCTGACACAAATGATGGAGGGAA
CACTGGAACCGGACCTGGGCTTCGTGATTGCCTTGGTAGGCTTAGAGGAC
CAGCATATTCGGCCTGGAAAGATCGAGTACGAGACGGGGCAGGTTGAGGT
ATTGGTTAAATTTACGGTAATGCTGTTTCGGCCTTTCCGCAACGAGATTC
TGGACGCCCAAGTAACAACAGTAACGGAAATGGGCTTCTTTGCCGACGCT
GGGCCTGTACAGGGTATTTATGTGAACAAGCACCAGATGCCCCAAGATTA
CGGGTTCGATGCTCAGGATAATGTATGGCGGACGTCGGATATGGAGGTGG
AGATCAGACCAGGGTGCGGGGTGCGGATGCGGGTGGTGGGCGTGGATATC
ACACCGGGACGGATGAACGTCGTCGGTTCGATCATGGACGATTTTACTGG
CCTCATCAGTGGAGACACTGACTAA
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Synonyms
Publications