|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr17 | genome | chr17:467911..470906 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G01590.1 vs.
Match: EWM24273.1 (protein of unknown function DUF1214 [Nannochloropsis gaditana]) HSP 1 Score: 594.0 bits (1530), Expect = 4.800e-166 Identity = 318/531 (59.89%), Postives = 380/531 (71.56%), Query Frame = 0
Query: 18 WQSRRYGPGGKKGWLVCFLKLSAIGIVLSFV-LGQCGVVLRNPAPICAWRLSKSWSVAWADTQASHHLMVLYLNEGEEFKLESESLPYARFFSFQTYSFLGDTSHGIIRDVDIVSRNGPNVYNNITAAMRGEKQGGYTLHLTADGFVGEYPNELRALAHGRRSGFFVLVFRMYDVGDVPHPRAPWAQLLRGSVRRPERWGWTSPPRLLVRRIRRQGPSPWREIPLCTERENESKKGFIENLIFNILFRLESFLPSIHSYTGFIRPLRKNNFHLQLGSLFDTPDTRTLVSAAANIPAVAEQGDLWARVSTKLPRTPRSLYAAPFVANTSAYDVRYVSFTSASRAFPLRTFETLTDKDIRQHHQDQLQGSREKWDGRFVLWVGPARAPIPEQARGEKALIMTWGTGADHALLYNQLNSMSHTMLDRAQSHSA---LANVVVEECFPFKERDDDGEEEKDKDEDEDEIRNNNVVSQSTSRETVCCLSKAERMPTFCRMPEFLHLNLREFFPAIDYFVHQQEEGQEQPSVLRKIS 545
WQ R G +GWL + + + I++SF+ L G+VLRNPAP+C+WRLS+S +VAW DTQASHH MV++LNEGEE+ +ESESLPY+RFFSFQTYS G TS+GI+RD +IVS+NGPN+Y N++AA GEKQGGYTL+LT DG G YPNEL+ L +G++SGFFVL+FR+YDVGD PHP APWA L RG R+P+RWGWT PPR+ VRR RQG WREIP C R+ K + + I + RLE P HSYTGFI+PLR+NNFHL LF + DTRTLVSAAA IPAV + GD+WARV KLPRTP SLY+ PF+AN S YDVRY+SFTSASRAFPL TFETLTDK IRQH++ +L+G E+WDGRF LW+GP AP PEQAR E ALIM WG A ALLYNQL S S RA S +A LANVVV EC E D+ EE DED I N VCCLS+ MPTFCRMPEFLHLNLRE+FPA+ +F ++ ++ E LRKIS
Sbjct: 22 WQ--RAGAERTRGWLTFSMHV-LVFILMSFIFLKYTGLVLRNPAPLCSWRLSQSLNVAWTDTQASHHSMVMFLNEGEEYTVESESLPYSRFFSFQTYSLDGKTSYGILRDAEIVSQNGPNLYANMSAAAGGEKQGGYTLYLTPDGSKG-YPNELQTLKYGQKSGFFVLIFRIYDVGDFPHPMAPWAHLSRGDARQPQRWGWTPPPRVSVRRTMRQG--SWREIPSCVTRQGPGGKLWSKTYILGLTNRLEDIFPPSHSYTGFIKPLRQNNFHLPHDHLFSSVDTRTLVSAAA-IPAV-DVGDVWARVEAKLPRTPSSLYSPPFIANQSDYDVRYISFTSASRAFPLWTFETLTDKSIRQHYESRLRGPHEQWDGRFSLWIGPVNAPPPEQARLENALIMRWGEVARPALLYNQLLSSS-----RAASGAAPPTLANVVVNECPRAAEHDNHDEE----DEDGSFINEGN----------VCCLSEPRGMPTFCRMPEFLHLNLREYFPAVTFFSYETQD--EHGPTLRKIS 523
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G01590.1 ID=NO17G01590.1|Name=NO17G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2996bp
AATAACAGCAGGAAGGAGGAGAAAAACGACGAGGAGAATCCGCACCGGCG
AGCTGGGAGGGCGGCTTGGGAATCACGGCACAACGAGCACGCGAGCTCCC
CGCCGGTGGAAGCAAGTACAAAAACCCAGCTCCTGTGACGGGCCGAGTCA
GGACAAGGGCTATTTACCAGAACGCAACAGCAAATTTGGGGGAGTCAAAC
GCAGTATAAGGGTCAAAGGCCCGACGTTCCCGTCAAGGAAACTTCGAAGC
GGAGGAGAGAGCTTAACAGGAGGGCATCGGTGCTGGCGGGACAAGGACAA
AATCCAAAAGACGACACCAGTAGCAATGATACATGACCCCATTCCCTACT
TTCAGGGTTTTCACGACAGTGGATGGTGGCAGAGTCGCAGGTATGGTCCA
GGAGGGAAAAAAGGCTGGCTCGTATGCTTCCTGAAGCTCTCCGCAATTGG
CATAGTCCTTTCCTTTGTCTTGGGGCAATGCGGCGTGGTCTTACGCAACC
CAGCACCCATTTGCGCTTGGCGGCTGTCGAAAAGCTGGAGCGTGGCCTGG
GCTGACACCCAAGCGTCCCACCATCTGATGGTCTTGTATCTGAATGAGGG
GGAGGAGTTTAAGTTGGAGAGCGAATCCTTGCCTTACGCCCGTTTTTTCA
GCTTCCAGACCTATTCCTTTTTGGGGGACACATCGCATGGAATTATTCGA
GATGTAGACATTGTGTCCCGTAATGGCCCAAACGTGTACAATAACATTAC
TGCCGCGATGCGTGGAGAGAAGCAAGGCGGCTACACCCTCCACTTGACTG
CCGACGGATTTGTCGGGGAGTACCCGAACGAATTGCGGGCTCTAGCGCAC
GGCCGACGCAGCGGGTTCTTTGTCCTCGTCTTTCGCATGTACGACGTCGG
CGATGTGCCTCATCCGCGAGCACCCTGGGCTCAATTGCTACGTGGGAGTG
TCAGGAGACCAGAGAGGTGGGGATGGACTTCCCCTCCTCGCTTACTGGTA
AGGCGCATACGGCGACAAGGTCCAAGCCCATGGCGTGAGATTCCCCTCTG
CACAGAGCGTGAAAATGAAAGTAAGAAGGGCTTCATTGAGAACTTGATTT
TCAATATCTTGTTCCGCCTCGAAAGCTTTCTTCCCTCCATACACTCCTAC
ACGGGGTTCATCCGGCCACTCCGTAAGAACAACTTCCACCTACAGCTTGG
AAGCTTGTTCGACACTCCGGACACCCGAACCCTGGTCTCAGCCGCCGCCA
ACATTCCTGCGGTCGCTGAGCAGGGCGACCTCTGGGCGCGTGTCTCTACA
AAGCTACCACGTACACCTCGCTCCCTCTATGCAGCGCCATTTGTGGCCAA
CACCAGCGCCTATGATGTCCGTTATGTTTCCTTCACCAGTGCCTCTCGCG
CCTTTCCACTACGGACTTTCGAGACATTGACCGACAAAGACATCCGACAA
CACCATCAAGATCAGCTACAAGGATCCCGTGAGAAGTGGGACGGTCGTTT
TGTCTTGTGGGTTGGCCCTGCGCGAGCACCCATTCCGGAGCAGGCTCGCG
GGGAAAAGGCCCTCATCATGACTTGGGGAACAGGCGCTGATCATGCCCTC
CTTTACAACCAGCTCAACTCCATGTCTCACACGATGCTTGACAGGGCGCA
GTCTCATTCGGCGTTGGCAAATGTTGTGGTCGAGGAATGCTTCCCTTTTA
AGGAGCGTGACGATGATGGTGAGGAGGAGAAGGATAAGGATGAGGATGAA
GACGAGATCCGCAACAACAACGTGGTCTCTCAATCTACGTCACGGGAGAC
GGTGTGCTGTCTGAGCAAAGCGGAAAGGATGCCCACTTTCTGTCGGATGC
CTGAGTTCCTGCATTTAAACCTGCGTGAATTCTTTCCGGCAATTGACTAC
TTTGTTCACCAGCAAGAAGAAGGACAAGAACAGCCTTCTGTCTTGCGGAA
AATTTCTTTCTAAAAATGTTTGTATAAATTACTCAGAAAATACCAAAATA
CGGAGTAAATTCATGACGAAAGGAGTCTAGGTAGGCAATTGAAACACTAT
ATACAATAACTTACATACGTACTTTGATCTGGCAGATACAAGAGAGGATT
CTTCAAATACATGGTTTTTTTTTCCAGCTTTGACTATCCCAAATGTAAAA
TTTAATTCATCAAATAGCAAAAAATTGTCGCATGTGTAAGGAAGGCTTTT
ATAATGAAGCCAAATCGAAGCTATATTCATCATTTTTATTTAAGGAGAGG
CGGATTTATTGAAAGAAACGTAAAAAAAAACAATTGTTGCTGCTTGCATC
AAAGAGACAGGAATATTTTCCTCGGTCTAATGGTGACAGGTGCTGGTAGA
GGTAGGATAGAGGAGGGGATAATTTGATTTACAAAAATTCAAGTACGATT
TGTCGGGCTTATTGTGACCTAAACAACTTGACCAGAGTAAGGGAAGGAAA
CAGGGAGTAAAGGAGGGGGAGACAATTGGAGGAAAGTGATAGAGCGCGCA
TCCGATTATGTGTTGTTGGAGCCGCATTTGATTCAATTGACCTTGAAAGG
AGGGCCATTGAATTCCCAGTTTCCGCAATGGCAATGGTCATAACATTTGT
AGGTATATTGTCAGCACCATTTTCTTCTACTTGGTACACTTAACTATGAC
ACACCGATAGCATACGGGTCCATGGATACCAATATCGAAAAGAGGAATGT
TGTGCCGCCTCGCGTAACTAATGTTTTCACTCGCCAATGAATGAAATGGA
GAAATCAAGGGAGACTTTAAAGTCGTTAAAGACTCATTAAAAGAAACTAA
TTGGCATGCATAGAATCGGAGTGAAGACCAGGAAAAAACTAACGGTAGGA
AAATATACAAGAAAGAAACACGAGTTGTGCATTCATGGGGGGAAAATCAA
AAGGAAAAGATTCGACTTCAGATATTTAAACGTGAAAAATGGGATAGTAG
TAATAAATAGCAGTTAGGAAAAATATTTTCCCATTGAGTTCTTTCA back to topprotein sequence of NO17G01590.1 >NO17G01590.1-protein ID=NO17G01590.1-protein|Name=NO17G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=546bp
MIHDPIPYFQGFHDSGWWQSRRYGPGGKKGWLVCFLKLSAIGIVLSFVLG
QCGVVLRNPAPICAWRLSKSWSVAWADTQASHHLMVLYLNEGEEFKLESE
SLPYARFFSFQTYSFLGDTSHGIIRDVDIVSRNGPNVYNNITAAMRGEKQ
GGYTLHLTADGFVGEYPNELRALAHGRRSGFFVLVFRMYDVGDVPHPRAP
WAQLLRGSVRRPERWGWTSPPRLLVRRIRRQGPSPWREIPLCTERENESK
KGFIENLIFNILFRLESFLPSIHSYTGFIRPLRKNNFHLQLGSLFDTPDT
RTLVSAAANIPAVAEQGDLWARVSTKLPRTPRSLYAAPFVANTSAYDVRY
VSFTSASRAFPLRTFETLTDKDIRQHHQDQLQGSREKWDGRFVLWVGPAR
APIPEQARGEKALIMTWGTGADHALLYNQLNSMSHTMLDRAQSHSALANV
VVEECFPFKERDDDGEEEKDKDEDEDEIRNNNVVSQSTSRETVCCLSKAE
RMPTFCRMPEFLHLNLREFFPAIDYFVHQQEEGQEQPSVLRKISF* back to topmRNA from alignment at chr17:467911..470906+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G01590.1 ID=NO17G01590.1|Name=NO17G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2996bp|location=Sequence derived from alignment at chr17:467911..470906+ (Nannochloropsis oceanica)
AATAACAGCAGGAAGGAGGAGAAAAACGACGAGGAGAATCCGCACCGGCG
AGCTGGGAGGGCGGCTTGGGAATCACGGCACAACGAGCACGCGAGCTCCC
CGCCGGTGGAAGCAAGTACAAAAACCCAGCTCCTGTGACGGGCCGAGTCA
GGACAAGGGCTATTTACCAGAACGCAACAGCAAATTTGGGGGAGTCAAAC
GCAGTATAAGGGTCAAAGGCCCGACGTTCCCGTCAAGGAAACTTCGAAGC
GGAGGAGAGAGCTTAACAGGAGGGCATCGGTGCTGGCGGGACAAGGACAA
AATCCAAAAGACGACACCAGTAGCAATGATACATGACCCCATTCCCTACT
TTCAGGGTTTTCACGACAGTGGATGGTGGCAGAGTCGCAGGTATGGTCCA
GGAGGGAAAAAAGGCTGGCTCGTATGCTTCCTGAAGCTCTCCGCAATTGG
CATAGTCCTTTCCTTTGTCTTGGGGCAATGCGGCGTGGTCTTACGCAACC
CAGCACCCATTTGCGCTTGGCGGCTGTCGAAAAGCTGGAGCGTGGCCTGG
GCTGACACCCAAGCGTCCCACCATCTGATGGTCTTGTATCTGAATGAGGG
GGAGGAGTTTAAGTTGGAGAGCGAATCCTTGCCTTACGCCCGTTTTTTCA
GCTTCCAGACCTATTCCTTTTTGGGGGACACATCGCATGGAATTATTCGA
GATGTAGACATTGTGTCCCGTAATGGCCCAAACGTGTACAATAACATTAC
TGCCGCGATGCGTGGAGAGAAGCAAGGCGGCTACACCCTCCACTTGACTG
CCGACGGATTTGTCGGGGAGTACCCGAACGAATTGCGGGCTCTAGCGCAC
GGCCGACGCAGCGGGTTCTTTGTCCTCGTCTTTCGCATGTACGACGTCGG
CGATGTGCCTCATCCGCGAGCACCCTGGGCTCAATTGCTACGTGGGAGTG
TCAGGAGACCAGAGAGGTGGGGATGGACTTCCCCTCCTCGCTTACTGGTA
AGGCGCATACGGCGACAAGGTCCAAGCCCATGGCGTGAGATTCCCCTCTG
CACAGAGCGTGAAAATGAAAGTAAGAAGGGCTTCATTGAGAACTTGATTT
TCAATATCTTGTTCCGCCTCGAAAGCTTTCTTCCCTCCATACACTCCTAC
ACGGGGTTCATCCGGCCACTCCGTAAGAACAACTTCCACCTACAGCTTGG
AAGCTTGTTCGACACTCCGGACACCCGAACCCTGGTCTCAGCCGCCGCCA
ACATTCCTGCGGTCGCTGAGCAGGGCGACCTCTGGGCGCGTGTCTCTACA
AAGCTACCACGTACACCTCGCTCCCTCTATGCAGCGCCATTTGTGGCCAA
CACCAGCGCCTATGATGTCCGTTATGTTTCCTTCACCAGTGCCTCTCGCG
CCTTTCCACTACGGACTTTCGAGACATTGACCGACAAAGACATCCGACAA
CACCATCAAGATCAGCTACAAGGATCCCGTGAGAAGTGGGACGGTCGTTT
TGTCTTGTGGGTTGGCCCTGCGCGAGCACCCATTCCGGAGCAGGCTCGCG
GGGAAAAGGCCCTCATCATGACTTGGGGAACAGGCGCTGATCATGCCCTC
CTTTACAACCAGCTCAACTCCATGTCTCACACGATGCTTGACAGGGCGCA
GTCTCATTCGGCGTTGGCAAATGTTGTGGTCGAGGAATGCTTCCCTTTTA
AGGAGCGTGACGATGATGGTGAGGAGGAGAAGGATAAGGATGAGGATGAA
GACGAGATCCGCAACAACAACGTGGTCTCTCAATCTACGTCACGGGAGAC
GGTGTGCTGTCTGAGCAAAGCGGAAAGGATGCCCACTTTCTGTCGGATGC
CTGAGTTCCTGCATTTAAACCTGCGTGAATTCTTTCCGGCAATTGACTAC
TTTGTTCACCAGCAAGAAGAAGGACAAGAACAGCCTTCTGTCTTGCGGAA
AATTTCTTTCTAAAAATGTTTGTATAAATTACTCAGAAAATACCAAAATA
CGGAGTAAATTCATGACGAAAGGAGTCTAGGTAGGCAATTGAAACACTAT
ATACAATAACTTACATACGTACTTTGATCTGGCAGATACAAGAGAGGATT
CTTCAAATACATGGTTTTTTTTTCCAGCTTTGACTATCCCAAATGTAAAA
TTTAATTCATCAAATAGCAAAAAATTGTCGCATGTGTAAGGAAGGCTTTT
ATAATGAAGCCAAATCGAAGCTATATTCATCATTTTTATTTAAGGAGAGG
CGGATTTATTGAAAGAAACGTAAAAAAAAACAATTGTTGCTGCTTGCATC
AAAGAGACAGGAATATTTTCCTCGGTCTAATGGTGACAGGTGCTGGTAGA
GGTAGGATAGAGGAGGGGATAATTTGATTTACAAAAATTCAAGTACGATT
TGTCGGGCTTATTGTGACCTAAACAACTTGACCAGAGTAAGGGAAGGAAA
CAGGGAGTAAAGGAGGGGGAGACAATTGGAGGAAAGTGATAGAGCGCGCA
TCCGATTATGTGTTGTTGGAGCCGCATTTGATTCAATTGACCTTGAAAGG
AGGGCCATTGAATTCCCAGTTTCCGCAATGGCAATGGTCATAACATTTGT
AGGTATATTGTCAGCACCATTTTCTTCTACTTGGTACACTTAACTATGAC
ACACCGATAGCATACGGGTCCATGGATACCAATATCGAAAAGAGGAATGT
TGTGCCGCCTCGCGTAACTAATGTTTTCACTCGCCAATGAATGAAATGGA
GAAATCAAGGGAGACTTTAAAGTCGTTAAAGACTCATTAAAAGAAACTAA
TTGGCATGCATAGAATCGGAGTGAAGACCAGGAAAAAACTAACGGTAGGA
AAATATACAAGAAAGAAACACGAGTTGTGCATTCATGGGGGGAAAATCAA
AAGGAAAAGATTCGACTTCAGATATTTAAACGTGAAAAATGGGATAGTAG
TAATAAATAGCAGTTAGGAAAAATATTTTCCCATTGAGTTCTTTCA back to topCoding sequence (CDS) from alignment at chr17:467911..470906+ >NO17G01590.1 ID=NO17G01590.1|Name=NO17G01590.1|organism=Nannochloropsis oceanica|type=CDS|length=1638bp|location=Sequence derived from alignment at chr17:467911..470906+ (Nannochloropsis oceanica)
ATGATACATGACCCCATTCCCTACTTTCAGGGTTTTCACGACAGTGGATG
GTGGCAGAGTCGCAGGTATGGTCCAGGAGGGAAAAAAGGCTGGCTCGTAT
GCTTCCTGAAGCTCTCCGCAATTGGCATAGTCCTTTCCTTTGTCTTGGGG
CAATGCGGCGTGGTCTTACGCAACCCAGCACCCATTTGCGCTTGGCGGCT
GTCGAAAAGCTGGAGCGTGGCCTGGGCTGACACCCAAGCGTCCCACCATC
TGATGGTCTTGTATCTGAATGAGGGGGAGGAGTTTAAGTTGGAGAGCGAA
TCCTTGCCTTACGCCCGTTTTTTCAGCTTCCAGACCTATTCCTTTTTGGG
GGACACATCGCATGGAATTATTCGAGATGTAGACATTGTGTCCCGTAATG
GCCCAAACGTGTACAATAACATTACTGCCGCGATGCGTGGAGAGAAGCAA
GGCGGCTACACCCTCCACTTGACTGCCGACGGATTTGTCGGGGAGTACCC
GAACGAATTGCGGGCTCTAGCGCACGGCCGACGCAGCGGGTTCTTTGTCC
TCGTCTTTCGCATGTACGACGTCGGCGATGTGCCTCATCCGCGAGCACCC
TGGGCTCAATTGCTACGTGGGAGTGTCAGGAGACCAGAGAGGTGGGGATG
GACTTCCCCTCCTCGCTTACTGGTAAGGCGCATACGGCGACAAGGTCCAA
GCCCATGGCGTGAGATTCCCCTCTGCACAGAGCGTGAAAATGAAAGTAAG
AAGGGCTTCATTGAGAACTTGATTTTCAATATCTTGTTCCGCCTCGAAAG
CTTTCTTCCCTCCATACACTCCTACACGGGGTTCATCCGGCCACTCCGTA
AGAACAACTTCCACCTACAGCTTGGAAGCTTGTTCGACACTCCGGACACC
CGAACCCTGGTCTCAGCCGCCGCCAACATTCCTGCGGTCGCTGAGCAGGG
CGACCTCTGGGCGCGTGTCTCTACAAAGCTACCACGTACACCTCGCTCCC
TCTATGCAGCGCCATTTGTGGCCAACACCAGCGCCTATGATGTCCGTTAT
GTTTCCTTCACCAGTGCCTCTCGCGCCTTTCCACTACGGACTTTCGAGAC
ATTGACCGACAAAGACATCCGACAACACCATCAAGATCAGCTACAAGGAT
CCCGTGAGAAGTGGGACGGTCGTTTTGTCTTGTGGGTTGGCCCTGCGCGA
GCACCCATTCCGGAGCAGGCTCGCGGGGAAAAGGCCCTCATCATGACTTG
GGGAACAGGCGCTGATCATGCCCTCCTTTACAACCAGCTCAACTCCATGT
CTCACACGATGCTTGACAGGGCGCAGTCTCATTCGGCGTTGGCAAATGTT
GTGGTCGAGGAATGCTTCCCTTTTAAGGAGCGTGACGATGATGGTGAGGA
GGAGAAGGATAAGGATGAGGATGAAGACGAGATCCGCAACAACAACGTGG
TCTCTCAATCTACGTCACGGGAGACGGTGTGCTGTCTGAGCAAAGCGGAA
AGGATGCCCACTTTCTGTCGGATGCCTGAGTTCCTGCATTTAAACCTGCG
TGAATTCTTTCCGGCAATTGACTACTTTGTTCACCAGCAAGAAGAAGGAC
AAGAACAGCCTTCTGTCTTGCGGAAAATTTCTTTCTAA back to top
|