NO17G01550.1, NO17G01550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01550.1
Unique NameNO17G01550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length702
Alignment locationchr17:457822..458603 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:457822..458603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO17G01550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01550NO17G01550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01550.1NO17G01550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01550.1.cds1NO17G01550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01550.1.cds2NO17G01550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01550.1 ID=NO17G01550.1|Name=NO17G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=702bp
ATGGAGGAGGAGGAGGGGAAGGAGGAGGAGGAGGGGAAGGAGGAGGAGGA
GGAGGAGGAGGCGGAGGAGGCGGAGGAGGAGGGGGAGGAGAAGGCGGAGG
AGGAAGCAGAGGCGGAGGCGGAGGAGGAGGCGGAGGCGGAGGTTGCGGAG
GAGGAGGCGGAGGCGGAGGAGGCGGAGGAGGAGGCGGAGGAGGAGGAGGC
GGAGGCGGAGGAGGCGGAGGCGGAGGAGGCGGAGGCGGAGGAGGCGGAGG
CGGAGGAGGCGGAGGCGGAGGAGGCGGAGGAGGAGGGGGTGGAGGAGGAG
GAGGGGGTGGAGGCGGTGGAATTAGAGGAGAAGGAGGCGGAGGAGAACGA
GGACGAGGCGGAGGAGAACGAGGACGAGGCAGAGGAAGAGGTCACGGGCG
GGCCATCCGAGGACTGTATTGGTGTAACACCTGTGAACAGTTCGTGTCTC
GGGACGGCAATGGGGCACGCAACATCCTGCGGGTGTACAGGAGTATGGTC
CGTGGGGAAGCTCGTCCCCATGATCTTCGGTTTGGTCAACCGCGGCAGGA
CATGTGGACACTCTATGTGTAGCGTTCCCGCTGACCTCCTCTTTTATCCT
CCTTCCCCTTCTCCTCCTGGCCCTGTGTGGGCCGTCCGGGGACTTTGCCA
GGTCAAAAACCCTCAAGTCGCCAGAAAAACTCGGACGAGAAATAAGGGAT
GA
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protein sequence of NO17G01550.1

>NO17G01550.1-protein ID=NO17G01550.1-protein|Name=NO17G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MEEEEGKEEEEGKEEEEEEEAEEAEEEGEEKAEEEAEAEAEEEAEAEVAE
EEAEAEEAEEEAEEEEAEAEEAEAEEAEAEEAEAEEAEAEEAEEEGVEEE
EGVEAVELEEKEAEENEDEAEENEDEAEEEVTGGPSEDCIGVTPVNSSCL
GTAMGHATSCGCTGVWSVGKLVPMIFGLVNRGRTCGHSMCSVPADLLFYP
PSPSPPGPVWAVRGLCQVKNPQVARKTRTRNKG*
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mRNA from alignment at chr17:457822..458603+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01550.1 ID=NO17G01550.1|Name=NO17G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=782bp|location=Sequence derived from alignment at chr17:457822..458603+ (Nannochloropsis oceanica)
ATGGTATGAAATCTGGCCTGTGCGTCAGATAATGTGAGCACATCCCGCCC
CAAATCCGAACGAATCGCCGAGCTCCCCCCAAGGAGGAGGAGGAGGGGAA
GGAGGAGGAGGAGGGGAAGGAGGAGGAGGAGGAGGAGGAGGCGGAGGAGG
CGGAGGAGGAGGGGGAGGAGAAGGCGGAGGAGGAAGCAGAGGCGGAGGCG
GAGGAGGAGGCGGAGGCGGAGGTTGCGGAGGAGGAGGCGGAGGCGGAGGA
GGCGGAGGAGGAGGCGGAGGAGGAGGAGGCGGAGGCGGAGGAGGCGGAGG
CGGAGGAGGCGGAGGCGGAGGAGGCGGAGGCGGAGGAGGCGGAGGCGGAG
GAGGCGGAGGAGGAGGGGGTGGAGGAGGAGGAGGGGGTGGAGGCGGTGGA
ATTAGAGGAGAAGGAGGCGGAGGAGAACGAGGACGAGGCGGAGGAGAACG
AGGACGAGGCAGAGGAAGAGGTCACGGGCGGGCCATCCGAGGACTGTATT
GGTGTAACACCTGTGAACAGTTCGTGTCTCGGGACGGCAATGGGGCACGC
AACATCCTGCGGGTGTACAGGAGTATGGTCCGTGGGGAAGCTCGTCCCCA
TGATCTTCGGTTTGGTCAACCGCGGCAGGACATGTGGACACTCTATGTGT
AGCGTTCCCGCTGACCTCCTCTTTTATCCTCCTTCCCCTTCTCCTCCTGG
CCCTGTGTGGGCCGTCCGGGGACTTTGCCAGGTCAAAAACCCTCAAGTCG
CCAGAAAAACTCGGACGAGAAATAAGGGATGA
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Coding sequence (CDS) from alignment at chr17:457822..458603+

>NO17G01550.1 ID=NO17G01550.1|Name=NO17G01550.1|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at chr17:457822..458603+ (Nannochloropsis oceanica)
ATGGAGGAGGAGGAGGGGAAGGAGGAGGAGGAGGGGAAGGAGGAGGAGGA
GGAGGAGGAGGCGGAGGAGGCGGAGGAGGAGGGGGAGGAGAAGGCGGAGG
AGGAAGCAGAGGCGGAGGCGGAGGAGGAGGCGGAGGCGGAGGTTGCGGAG
GAGGAGGCGGAGGCGGAGGAGGCGGAGGAGGAGGCGGAGGAGGAGGAGGC
GGAGGCGGAGGAGGCGGAGGCGGAGGAGGCGGAGGCGGAGGAGGCGGAGG
CGGAGGAGGCGGAGGCGGAGGAGGCGGAGGAGGAGGGGGTGGAGGAGGAG
GAGGGGGTGGAGGCGGTGGAATTAGAGGAGAAGGAGGCGGAGGAGAACGA
GGACGAGGCGGAGGAGAACGAGGACGAGGCAGAGGAAGAGGTCACGGGCG
GGCCATCCGAGGACTGTATTGGTGTAACACCTGTGAACAGTTCGTGTCTC
GGGACGGCAATGGGGCACGCAACATCCTGCGGGTGTACAGGAGTATGGTC
CGTGGGGAAGCTCGTCCCCATGATCTTCGGTTTGGTCAACCGCGGCAGGA
CATGTGGACACTCTATGTGTAGCGTTCCCGCTGACCTCCTCTTTTATCCT
CCTTCCCCTTCTCCTCCTGGCCCTGTGTGGGCCGTCCGGGGACTTTGCCA
GGTCAAAAACCCTCAAGTCGCCAGAAAAACTCGGACGAGAAATAAGGGAT
GA
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Synonyms
Publications