NO17G01520.1, NO17G01520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01520.1
Unique NameNO17G01520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1782
Alignment locationchr17:450465..452407 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:450465..452407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01520.1 vs.
Match: EWM24247.1 (methyltransferase 10 domain containing [Nannochloropsis gaditana])

HSP 1 Score: 598.6 bits (1542), Expect = 2.100e-167
Identity = 314/559 (56.17%), Postives = 394/559 (70.48%), Query Frame = 0 
Query:   21 KRVRAG--HKHHQDSKYRDYKPDFAALARQYPDSFGPFVTYLDTEMTEAVVNWEDPKAARALTRTLLQHDFQLKWDIPLERLCPPVPNRLNYICWVEDLLRLRQTTVAYANAVNKGVVKGLDVGTGASAIYPLLGCKVYGWNFLATDIDSTALEAARANVRRNKLEDRVTLKLVPRINYSTDVFSKTTAVAAAAAAPLGPIRMALEAED-AKATQLAFVMCNPPFFSSLEEIHAGYANKDGRGDISSCCDEGPPPVPQTPHGCVDEVITPGGELSFVTAMVRDSLVLREKIEWYTSMVGKKSSLRKLLGVLREGGVRNVRTTEFLQGRTTRWGLGWSFTAAGLEELEGGGGCVHKVFGKKKMEKKREAIYSFMVKEG---QGGGWEQGLDEEA-VLQRVLDYFHSTRQLRVVRVGFASSGAEDLFRKMVVAEVSGQGAPEGPPPTVASHFAVPPVPPSDPAWRTRCVVMVTMLADAAAHALEEHKKETTVGATGMEVENGGNSGGEEEREDKGERGH----WVRVTVEMTSGGDRAVFWKLCSLLPGEVARTNRTWRRK 569
            KR R G   K HQDSKYR Y+PDFAALAR YPD+FG  V YL+ + +EA+++W+DP + RALT+TLL+HDF L+WDIPLERLCPPVPNRLNY+CWV+DLL L  +  +     ++  ++GLDVGTGASAIYPLLGCK++ W+FL TDID  ALEAA ANVR N +EDR++L+LV R++YS       TA+   A +  GPI+ AL+A       +L FVMCNPPFF+SL+EIH+G++ K GR        +    +   PHGC DE+ITPGGEL+FVTAM+ DSL LR+++ WY+SMVGKK SL+KLLG+LRE GV+NVRTT+F QGRTTRWG+ WSF+ AGL E++G G   HKVFGK+KM KKRE  +SF V+     Q    E+G  EEA VL RVL+YF  TR L V+RVG     AEDLFRKM+V E+S  G P   PP V S FA PPVPPSDP W+ RCVV++T+LA A+    + + +  T    G E +   +     +  + GERG      V V +EMTSGGDR  FWKLC+LLPGEV+RTNR WRRK
Sbjct:   20 KRTRVGCEAKFHQDSKYRGYRPDFAALARLYPDTFGHLVIYLNDDKSEALIDWKDPISTRALTKTLLRHDFGLEWDIPLERLCPPVPNRLNYVCWVKDLLSLGGSDTSQ----SRTGIRGLDVGTGASAIYPLLGCKLHDWSFLGTDIDPEALEAASANVRENHMEDRISLQLVSRVDYSELSSFSFTALQTGAGSVRGPIQTALDAAGMGSEYELDFVMCNPPFFASLDEIHSGFSLKSGR--------KTSKRISTDPHGCADEMITPGGELAFVTAMILDSLALRDRVRWYSSMVGKKLSLKKLLGLLREAGVQNVRTTQFAQGRTTRWGIAWSFSQAGLAEVKGAGASAHKVFGKRKMVKKRETSFSFSVRFNPPLQTADVEEGSSEEAVVLDRVLEYFSITRNLCVLRVGITCGAAEDLFRKMIVVELSSHGTPTKAPPVVVSAFAAPPVPPSDPGWKMRCVVLITVLAGASHE--DSNDEALTTADLGREPQPLVSEEMNVDDIENGERGREGECSVEVNIEMTSGGDRPAFWKLCNLLPGEVSRTNRKWRRK 564
The following BLAST results are available for this feature:
BLAST of NO17G01520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24247.12.100e-16756.17methyltransferase 10 domain containing [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01520NO17G01520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01520.1NO17G01520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01520.1.cds1NO17G01520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01520.1.cds2NO17G01520.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01520.1 ID=NO17G01520.1|Name=NO17G01520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1782bp
ATGACCCACAAGGTCGCAAGGGTGGAGTTTGGCGGCAGCTCAGCGCAACA
AACCCAGCAAAAGCGCGTGCGGGCTGGGCATAAGCATCATCAAGACTCTA
AGTACCGAGATTACAAGCCCGACTTTGCTGCTCTCGCCCGCCAGTACCCC
GACAGCTTTGGACCCTTTGTCACCTACCTAGACACCGAAATGACAGAGGC
AGTCGTAAATTGGGAGGACCCCAAGGCAGCACGGGCCTTGACAAGGACCC
TTCTCCAGCATGACTTTCAACTAAAATGGGACATCCCGCTTGAGCGCTTG
TGCCCCCCCGTCCCGAACCGCCTCAATTACATCTGCTGGGTCGAGGACCT
TCTCCGGCTCAGACAGACGACAGTCGCTTATGCCAATGCCGTTAACAAGG
GGGTAGTGAAGGGCTTGGATGTGGGCACGGGTGCCTCTGCGATCTACCCA
TTATTGGGGTGCAAGGTCTATGGTTGGAACTTTTTGGCAACGGATATCGA
CTCCACGGCCTTGGAAGCGGCCCGGGCAAATGTGCGGAGAAATAAGCTGG
AAGACCGTGTAACGCTTAAATTGGTGCCTCGCATAAATTACAGCACAGAC
GTGTTCTCAAAGACGACGGCGGTGGCGGCGGCAGCGGCTGCTCCTCTTGG
ACCCATTCGAATGGCTCTGGAAGCGGAGGATGCGAAGGCAACACAGCTGG
CTTTCGTCATGTGCAATCCCCCTTTCTTCAGCTCTCTAGAGGAGATTCAT
GCTGGCTATGCCAATAAAGACGGCAGGGGCGACATCAGCAGCTGCTGCGA
CGAGGGCCCACCGCCAGTACCGCAGACTCCTCATGGGTGTGTCGATGAGG
TGATCACCCCGGGGGGGGAACTGTCCTTTGTCACGGCCATGGTGAGAGAC
AGTCTCGTCTTGCGCGAGAAGATCGAATGGTATACGAGTATGGTGGGCAA
AAAAAGCTCACTTAGAAAGCTTTTGGGGGTACTGAGGGAGGGGGGGGTGC
GGAATGTGAGGACGACGGAATTCTTGCAAGGGCGGACGACCCGGTGGGGT
CTCGGGTGGAGCTTCACTGCTGCCGGATTGGAAGAGCTAGAGGGGGGCGG
CGGGTGTGTACATAAAGTTTTCGGGAAGAAGAAAATGGAGAAGAAACGAG
AAGCTATTTATTCATTTATGGTGAAGGAGGGGCAGGGAGGGGGATGGGAA
CAGGGATTGGATGAGGAGGCGGTCTTGCAGCGTGTGCTCGATTACTTTCA
TAGCACAAGGCAACTACGCGTGGTGCGCGTTGGCTTCGCGTCAAGTGGTG
CTGAGGATCTATTTCGAAAAATGGTCGTGGCGGAGGTGAGTGGCCAGGGG
GCGCCTGAAGGCCCCCCTCCCACTGTTGCCTCTCATTTTGCTGTTCCTCC
CGTTCCTCCTTCGGATCCTGCCTGGAGGACGCGATGCGTGGTGATGGTAA
CAATGTTGGCTGACGCTGCTGCTCATGCACTGGAAGAGCACAAAAAGGAA
ACGACAGTAGGGGCGACAGGGATGGAGGTGGAGAACGGAGGCAATAGTGG
AGGAGAGGAGGAGCGGGAAGACAAGGGGGAGCGAGGGCACTGGGTGAGGG
TGACGGTAGAAATGACCTCAGGTGGGGATCGGGCTGTATTCTGGAAGCTC
TGCAGTCTCTTGCCGGGGGAGGTGGCAAGGACCAATCGGACGTGGCGGCG
GAAGCTCAAAGGAGGAGGGGAGGGAGTTGAGGGGAGGGGGGAAGGAGGGG
GAGAAGCAGTGGCAAGCATGATTGCCGACTGA
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protein sequence of NO17G01520.1

>NO17G01520.1-protein ID=NO17G01520.1-protein|Name=NO17G01520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=594bp
MTHKVARVEFGGSSAQQTQQKRVRAGHKHHQDSKYRDYKPDFAALARQYP
DSFGPFVTYLDTEMTEAVVNWEDPKAARALTRTLLQHDFQLKWDIPLERL
CPPVPNRLNYICWVEDLLRLRQTTVAYANAVNKGVVKGLDVGTGASAIYP
LLGCKVYGWNFLATDIDSTALEAARANVRRNKLEDRVTLKLVPRINYSTD
VFSKTTAVAAAAAAPLGPIRMALEAEDAKATQLAFVMCNPPFFSSLEEIH
AGYANKDGRGDISSCCDEGPPPVPQTPHGCVDEVITPGGELSFVTAMVRD
SLVLREKIEWYTSMVGKKSSLRKLLGVLREGGVRNVRTTEFLQGRTTRWG
LGWSFTAAGLEELEGGGGCVHKVFGKKKMEKKREAIYSFMVKEGQGGGWE
QGLDEEAVLQRVLDYFHSTRQLRVVRVGFASSGAEDLFRKMVVAEVSGQG
APEGPPPTVASHFAVPPVPPSDPAWRTRCVVMVTMLADAAAHALEEHKKE
TTVGATGMEVENGGNSGGEEEREDKGERGHWVRVTVEMTSGGDRAVFWKL
CSLLPGEVARTNRTWRRKLKGGGEGVEGRGEGGGEAVASMIAD*
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mRNA from alignment at chr17:450465..452407+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01520.1 ID=NO17G01520.1|Name=NO17G01520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1943bp|location=Sequence derived from alignment at chr17:450465..452407+ (Nannochloropsis oceanica)
ATGACCCACAAGGTCGCAAGGGTGGAGTTTGGCGGCAGCTCAGCGCAACA
AACCCAGCAAAAGCGCGTGCGGGCTGGGCATAAGCATCATCAAGACTCTA
AGTACCGAGATTACAAGCCCGACTTTGCTGCTCTCGCCCGCCAGTACCCC
GACAGCTTTGGACCCTTGTACGTCCCGCATTGTCTTCTTATCCTCCATAT
TCTTGATCTCCTTGCGTTTGTGTTGTCCTCGTCCTGTCTGGAGCATCTTT
TTCCCCATCACACCCGGCTTCCTGTTCCTTACAGATCGTTCTCCTCCCGA
CCCTACCCAACCCCTTCACACTTCTCAGTGTCACCTACCTAGACACCGAA
ATGACAGAGGCAGTCGTAAATTGGGAGGACCCCAAGGCAGCACGGGCCTT
GACAAGGACCCTTCTCCAGCATGACTTTCAACTAAAATGGGACATCCCGC
TTGAGCGCTTGTGCCCCCCCGTCCCGAACCGCCTCAATTACATCTGCTGG
GTCGAGGACCTTCTCCGGCTCAGACAGACGACAGTCGCTTATGCCAATGC
CGTTAACAAGGGGGTAGTGAAGGGCTTGGATGTGGGCACGGGTGCCTCTG
CGATCTACCCATTATTGGGGTGCAAGGTCTATGGTTGGAACTTTTTGGCA
ACGGATATCGACTCCACGGCCTTGGAAGCGGCCCGGGCAAATGTGCGGAG
AAATAAGCTGGAAGACCGTGTAACGCTTAAATTGGTGCCTCGCATAAATT
ACAGCACAGACGTGTTCTCAAAGACGACGGCGGTGGCGGCGGCAGCGGCT
GCTCCTCTTGGACCCATTCGAATGGCTCTGGAAGCGGAGGATGCGAAGGC
AACACAGCTGGCTTTCGTCATGTGCAATCCCCCTTTCTTCAGCTCTCTAG
AGGAGATTCATGCTGGCTATGCCAATAAAGACGGCAGGGGCGACATCAGC
AGCTGCTGCGACGAGGGCCCACCGCCAGTACCGCAGACTCCTCATGGGTG
TGTCGATGAGGTGATCACCCCGGGGGGGGAACTGTCCTTTGTCACGGCCA
TGGTGAGAGACAGTCTCGTCTTGCGCGAGAAGATCGAATGGTATACGAGT
ATGGTGGGCAAAAAAAGCTCACTTAGAAAGCTTTTGGGGGTACTGAGGGA
GGGGGGGGTGCGGAATGTGAGGACGACGGAATTCTTGCAAGGGCGGACGA
CCCGGTGGGGTCTCGGGTGGAGCTTCACTGCTGCCGGATTGGAAGAGCTA
GAGGGGGGCGGCGGGTGTGTACATAAAGTTTTCGGGAAGAAGAAAATGGA
GAAGAAACGAGAAGCTATTTATTCATTTATGGTGAAGGAGGGGCAGGGAG
GGGGATGGGAACAGGGATTGGATGAGGAGGCGGTCTTGCAGCGTGTGCTC
GATTACTTTCATAGCACAAGGCAACTACGCGTGGTGCGCGTTGGCTTCGC
GTCAAGTGGTGCTGAGGATCTATTTCGAAAAATGGTCGTGGCGGAGGTGA
GTGGCCAGGGGGCGCCTGAAGGCCCCCCTCCCACTGTTGCCTCTCATTTT
GCTGTTCCTCCCGTTCCTCCTTCGGATCCTGCCTGGAGGACGCGATGCGT
GGTGATGGTAACAATGTTGGCTGACGCTGCTGCTCATGCACTGGAAGAGC
ACAAAAAGGAAACGACAGTAGGGGCGACAGGGATGGAGGTGGAGAACGGA
GGCAATAGTGGAGGAGAGGAGGAGCGGGAAGACAAGGGGGAGCGAGGGCA
CTGGGTGAGGGTGACGGTAGAAATGACCTCAGGTGGGGATCGGGCTGTAT
TCTGGAAGCTCTGCAGTCTCTTGCCGGGGGAGGTGGCAAGGACCAATCGG
ACGTGGCGGCGGAAGCTCAAAGGAGGAGGGGAGGGAGTTGAGGGGAGGGG
GGAAGGAGGGGGAGAAGCAGTGGCAAGCATGATTGCCGACTGA
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Coding sequence (CDS) from alignment at chr17:450465..452407+

>NO17G01520.1 ID=NO17G01520.1|Name=NO17G01520.1|organism=Nannochloropsis oceanica|type=CDS|length=1782bp|location=Sequence derived from alignment at chr17:450465..452407+ (Nannochloropsis oceanica)
ATGACCCACAAGGTCGCAAGGGTGGAGTTTGGCGGCAGCTCAGCGCAACA
AACCCAGCAAAAGCGCGTGCGGGCTGGGCATAAGCATCATCAAGACTCTA
AGTACCGAGATTACAAGCCCGACTTTGCTGCTCTCGCCCGCCAGTACCCC
GACAGCTTTGGACCCTTTGTCACCTACCTAGACACCGAAATGACAGAGGC
AGTCGTAAATTGGGAGGACCCCAAGGCAGCACGGGCCTTGACAAGGACCC
TTCTCCAGCATGACTTTCAACTAAAATGGGACATCCCGCTTGAGCGCTTG
TGCCCCCCCGTCCCGAACCGCCTCAATTACATCTGCTGGGTCGAGGACCT
TCTCCGGCTCAGACAGACGACAGTCGCTTATGCCAATGCCGTTAACAAGG
GGGTAGTGAAGGGCTTGGATGTGGGCACGGGTGCCTCTGCGATCTACCCA
TTATTGGGGTGCAAGGTCTATGGTTGGAACTTTTTGGCAACGGATATCGA
CTCCACGGCCTTGGAAGCGGCCCGGGCAAATGTGCGGAGAAATAAGCTGG
AAGACCGTGTAACGCTTAAATTGGTGCCTCGCATAAATTACAGCACAGAC
GTGTTCTCAAAGACGACGGCGGTGGCGGCGGCAGCGGCTGCTCCTCTTGG
ACCCATTCGAATGGCTCTGGAAGCGGAGGATGCGAAGGCAACACAGCTGG
CTTTCGTCATGTGCAATCCCCCTTTCTTCAGCTCTCTAGAGGAGATTCAT
GCTGGCTATGCCAATAAAGACGGCAGGGGCGACATCAGCAGCTGCTGCGA
CGAGGGCCCACCGCCAGTACCGCAGACTCCTCATGGGTGTGTCGATGAGG
TGATCACCCCGGGGGGGGAACTGTCCTTTGTCACGGCCATGGTGAGAGAC
AGTCTCGTCTTGCGCGAGAAGATCGAATGGTATACGAGTATGGTGGGCAA
AAAAAGCTCACTTAGAAAGCTTTTGGGGGTACTGAGGGAGGGGGGGGTGC
GGAATGTGAGGACGACGGAATTCTTGCAAGGGCGGACGACCCGGTGGGGT
CTCGGGTGGAGCTTCACTGCTGCCGGATTGGAAGAGCTAGAGGGGGGCGG
CGGGTGTGTACATAAAGTTTTCGGGAAGAAGAAAATGGAGAAGAAACGAG
AAGCTATTTATTCATTTATGGTGAAGGAGGGGCAGGGAGGGGGATGGGAA
CAGGGATTGGATGAGGAGGCGGTCTTGCAGCGTGTGCTCGATTACTTTCA
TAGCACAAGGCAACTACGCGTGGTGCGCGTTGGCTTCGCGTCAAGTGGTG
CTGAGGATCTATTTCGAAAAATGGTCGTGGCGGAGGTGAGTGGCCAGGGG
GCGCCTGAAGGCCCCCCTCCCACTGTTGCCTCTCATTTTGCTGTTCCTCC
CGTTCCTCCTTCGGATCCTGCCTGGAGGACGCGATGCGTGGTGATGGTAA
CAATGTTGGCTGACGCTGCTGCTCATGCACTGGAAGAGCACAAAAAGGAA
ACGACAGTAGGGGCGACAGGGATGGAGGTGGAGAACGGAGGCAATAGTGG
AGGAGAGGAGGAGCGGGAAGACAAGGGGGAGCGAGGGCACTGGGTGAGGG
TGACGGTAGAAATGACCTCAGGTGGGGATCGGGCTGTATTCTGGAAGCTC
TGCAGTCTCTTGCCGGGGGAGGTGGCAAGGACCAATCGGACGTGGCGGCG
GAAGCTCAAAGGAGGAGGGGAGGGAGTTGAGGGGAGGGGGGAAGGAGGGG
GAGAAGCAGTGGCAAGCATGATTGCCGACTGA
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Synonyms
Publications