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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr17 | genome | chr17:430492..434048 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G01410.1 vs.
Match: EWM24268.1 (uncharacterized protein Naga_100020g60 [Nannochloropsis gaditana]) HSP 1 Score: 156.0 bits (393), Expect = 1.800e-34 Identity = 79/113 (69.91%), Postives = 94/113 (83.19%), Query Frame = 0
Query: 6 LQALVGPTQDTLNQHWAQGKAKSFGFQMMMKMGWSDGRGLGRELQGNAKHLTVSKKVDNAGLGSVKDETGNAGWTEASASFDSVLSKLNAHYGGQREAAQKKWEQKEKKRGNK 119
L++LVGP QDTLNQHW GK K+FGF+MMMKMGWSDG+GLG+ELQG A H+TV+KKVD+AGLGSV+DETGNAGWTEASA+FDSVLSKLN Y Q ++K K++ RG K
Sbjct: 13 LKSLVGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKLNETYKRQEVPLKRK---KKRARGEK 122
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G01410.1 ID=NO17G01410.1|Name=NO17G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=3413bp GTCCAGTGGGGGTCCAAAACTGTCCTCAAGCATGTCTATTTCCGGTATCC TCGTCACAACATCATCATCATACTTAAACCACTTAGCATTTCCTGGCTGC ATAGTCTCGCCTGCCACCGCCTTTTCTGCTGCTGCTGCTTCTGCTGCTGC TGCTGCAGCAGCATCTTGCTGTGGGAAACCCAGCCGGTCATCCTGCCGGA CATAGGCGTAGTAATGCCCCGCGTCCACATCCCCACTATGAACCAACACC GAATGAAGACAATAAGGAAGTGCCACTCTCTCCCCTAAGAGCTGCTGTTC CTCCTTCGCAAGGTACGGGGACAAATCAAGCGAAGTCGGAAAGAGAAACC TCTGGTTAACCTTCACCATCGCCCCAGTATGAAAATTATACTCAAACCGC TTTAAATGAATAGTTAGAACCGGCGGGCACTCCGTAAAGCGTGTAAATCG TTCCGCGTCTTGCTTGCCATGCCCCTCCGCATCGTACTGATCCGCCCCAA CCATCATCTCGGGCCTCACGAAGGCGTCCAGTGAATCCTTCAAAGTCGGA TATCCCTTCACATCCAATTGGACGTCATAAAACTCCTCCTCCCGTGAACT CTGACACTCCACATTCAAACACCTCGTGGTCGGTCTCGTCTTTCCGCCAA ACAACGCCTTCACCGTGCCCTCAACACGAGTCCCCTTCATCTTCTCCTCC AAACGGTCACACAGCACCCGGTTCAATTCCTGCACATCCTGTTGCACATT ACTCTCACGAATATTCCAGCCAAATGCCCCCGTCAGCTCCTTTGTACTCA CCGCCTTACTCTCTGTCTGCAATCGAAAGAAGACCCTCTGCAGCGCCAAC GCCACGCTCCTGCCCTTATCCTCCCCCTCTGTCGGCATCGCGTACACAGC CCTCCTCAAACTCCGCAAGCTCCACAGAAACTGTAACAGCGAGTTCATGT AACACGTGGCTCCCTGATTCTTCAACCCCACCATGCCCGTCTCCTTAGCC GAGTCATAATTTTCCAAATTCCTATAGCCACTTAAATCCTGAATGCTCAC ATCCACCAAAATTCGTTCATCCGCCGTCATAAACGAGGGATTTTGTTTTT TCAGCACTTCTTCCGTCAAAAATTTCGGCGACCCCCAATCCGTGCTATTA AGCGTATATTCATGATTAAGAACTTCAGTGTGATACGGCTTGGGTGAGCG ATCGCGCAAGGTGAATCTGACCCAGCGACGGCAGTAGGGGTTGGGTGGGG GATGCTCGGGGTTGGAGGGGTCGATCTCGAGGTAGATTGAATAGCACATG TCTTTGTGGTTGCCATAGGGAAAATACATGAGCCGCCAGGAGTACCCCCG CGCGTCTTGCACCCAGGAAGTCACGCATTTGTACGTGTCTGTGTCTTTCG CTCGCAGTTTCGCTGCTGCGTAGTCGGCTAGGTCGGGGGCAGGCAAGGCG GCGGTGAACTTCAGCATGCCAGGCTTGACGCAGGCCACCACCACCTGCCC CACCGCAACGTCCTCGGAACTCGGAAAAACACTGTCGTTGTCCACGTCTG CGTCCACAACAGCCTTTTCTTTTGCAGGCGGAACGACGGCGGGCTCCGTG GTGGTGGCGGCGATGGGACTGGCATTGGCACCTTCCATCGGATTTGTCAT CACGTCAGCTTCTCCTTCCTCCGTGTCCAGGGCCCGTTGGATACCCCCAC ACCCACTTTGTGGTGGCATCTTCATCTCCATAACTTTGTGTCGTGCCTCG GGGGAATGCATGGCTCCGTTGCCGCCCTGGTCTGGGTGAAAGTCAGCTGT CTCCTCCTGAGGCTTGCCTAGCGCTGCAGGCTTCCGGACCGGCGAGGTGG ATCCCACAGGAGGCATCAGCAGTCGCTAGAAACTTGCCTCGGAAATTCAG GCGTTCCTGTCACGCGTGGTGCTGGCTGTATGGAGAAGGAAAGAGGGAAA AATATATATGGGTTCGTAAGTGCCTTACCTAGTACACGGGCGATTGCATT GAAATTGAGGACGAAGAATTGGGGAGTTCGCTTGCGTGCATGTCGCTCAC AAGATATGCGGCCAAAACTTGGCCCCGCTTCCTACATGACAAGGCTGGAC CAGGGTGTGATCGGAATTATGAGTTCATTTTTGGGGCTTGCTTCACCCCT TGTGTGGCAGGACCCCTTCCGCTCTCATTCCACCCCACCCCCACCATTGA CACCCCCAGCCTGCACGTATACACAGCCCCGTAGATACACACAATCCAAC CAGGCGCCCACCAACCATCTAATCGGCCTCACTCCTCGCTTTACCACTAC TCCATTCATTATAAGGATCCGCCCACTACTCCATTCATTATAAGGATCCG CCCGCCGCACACGCAACTATCTGGAAGCCGACTATTTGCCCCCCCCCAAA ATCATGGCGGATGGCATCTTGCAAGCATTGGTAGGGCCAACGCAAGACAC GCTGAACCAGCACTGGGCCCAAGGCAAGGCCAAAAGCTTCGGCTTCCAAA TGATGATGAAGATGGGTTGGAGCGATGGAAGGGGTCTGGGAAGGGAGCTA CAGGGGAATGCCAAGCACTTGACCGTGAGCAAGAAAGTGGACAACGCTGG CTTGGGCAGCGTCAAAGACGAAACAGGGAACGCAGGCTGGACAGAGGCCT CCGCCAGCTTTGACAGCGTTCTCAGCAAACTGAATGCCCACTACGGGGGG CAACGGGAAGCGGCACAAAAGAAGTGGGAGCAGAAAGAAAAGAAGAGGGG CAACAAGAGCAGGAAGAAGGAAGGGGGAGGAACGGCTTCAGGGCTCTTGC GGCATCCCAAGTTGCTGCAGAGTAAGAACATCCGGAAATACAGCGCGCAT GACATGCAAGCTATTCTTGGGATTAGATGTGTAGATGCGACACCATCGAG CCAGGGATCTGGGGAGGGCAGAGGGGAGGCGCCTTCGCTATGGTCAGCTT TGGCTGGTGCTTCGAGTGGAGCTTGTAAAAAAAGTGATGATATGGGCAGT AGGACGAAGGAAAAATGGAATAAGAAAAAGAGGGAGCGTCGCAACAGCAT TTGTATTAATAGTTGTAGTGGTGGAGAAGCGAAGGAAGACGGAAAAAAGG AGGAAACAACCAAGAAGAGTAAAAAAGAAATGGTGCGGCAAGACGAGGAT ACTGACAGCAAGGAAGGGCGAGCGGAGCAGAAACAAGCCACAAAACGAAA GAGAAGAGAGGAGAAGGCAAAGACATCGGAGGCGAAAGTTTTATCTACTG GAGGTAAGAAGAAAAGCAAAAGAAAGAAGGATTGTGAGTGAATGAAGAAA AATGCCAGTCACTGACCAACAAATATCTGAGAACCCAGGGAAACCTAAGG GAAATTGAGATGTTGTGAACGAAATAAAGGAATGAAAAAAAATTATTATA TTAATCTACGAAG back to topprotein sequence of NO17G01410.1 >NO17G01410.1-protein ID=NO17G01410.1-protein|Name=NO17G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp MADGILQALVGPTQDTLNQHWAQGKAKSFGFQMMMKMGWSDGRGLGRELQ GNAKHLTVSKKVDNAGLGSVKDETGNAGWTEASASFDSVLSKLNAHYGGQ REAAQKKWEQKEKKRGNKSRKKEGGGTASGLLRHPKLLQSKNIRKYSAHD MQAILGIRCVDATPSSQGSGEGRGEAPSLWSALAGASSGACKKSDDMGSR TKEKWNKKKRERRNSICINSCSGGEAKEDGKKEETTKKSKKEMVRQDEDT DSKEGRAEQKQATKRKRREEKAKTSEAKVLSTGGKKKSKRKKDCE* back to topmRNA from alignment at chr17:430492..434048- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G01410.1 ID=NO17G01410.1|Name=NO17G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=3557bp|location=Sequence derived from alignment at chr17:430492..434048- (Nannochloropsis oceanica) GTCCAGTGGGGGTCCAAAACTGTCCTCAAGCATGTCTATTTCCGGTATCC
TCGTCACAACATCATCATCATACTTAAACCACTTAGCATTTCCTGGCTGC
ATAGTCTCGCCTGCCACCGCCTTTTCTGCTGCTGCTGCTTCTGCTGCTGC
TGCTGCAGCAGCATCTTGCTGTGGGAAACCCAGCCGGTCATCCTGCCGGA
CATAGGCGTAGTAATGCCCCGCGTCCACATCCCCACTATGAACCAACACC
GAATGAAGACAATAAGGAAGTGCCACTCTCTCCCCTAAGAGCTGCTGTTC
CTCCTTCGCAAGGTACGGGGACAAATCAAGCGAAGTCGGAAAGAGAAACC
TCTGGTTAACCTTCACCATCGCCCCAGTATGAAAATTATACTCAAACCGC
TTTAAATGAATAGTTAGAACCGGCGGGCACTCCGTAAAGCGTGTAAATCG
TTCCGCGTCTTGCTTGCCATGCCCCTCCGCATCGTACTGATCCGCCCCAA
CCATCATCTCGGGCCTCACGAAGGCGTCCAGTGAATCCTTCAAAGTCGGA
TATCCCTTCACATCCAATTGGACGTCATAAAACTCCTCCTCCCGTGAACT
CTGACACTCCACATTCAAACACCTCGTGGTCGGTCTCGTCTTTCCGCCAA
ACAACGCCTTCACCGTGCCCTCAACACGAGTCCCCTTCATCTTCTCCTCC
AAACGGTCACACAGCACCCGGTTCAATTCCTGCACATCCTGTTGCACATT
ACTCTCACGAATATTCCAGCCAAATGCCCCCGTCAGCTCCTTTGTACTCA
CCGCCTTACTCTCTGTCTGCAATCGAAAGAAGACCCTCTGCAGCGCCAAC
GCCACGCTCCTGCCCTTATCCTCCCCCTCTGTCGGCATCGCGTACACAGC
CCTCCTCAAACTCCGCAAGCTCCACAGAAACTGTAACAGCGAGTTCATGT
AACACGTGGCTCCCTGATTCTTCAACCCCACCATGCCCGTCTCCTTAGCC
GAGTCATAATTTTCCAAATTCCTATAGCCACTTAAATCCTGAATGCTCAC
ATCCACCAAAATTCGTTCATCCGCCGTCATAAACGAGGGATTTTGTTTTT
TCAGCACTTCTTCCGTCAAAAATTTCGGCGACCCCCAATCCGTGCTATTA
AGCGTATATTCATGATTAAGAACTTCAGTGTGATACGGCTTGGGTGAGCG
ATCGCGCAAGGTGAATCTGACCCAGCGACGGCAGTAGGGGTTGGGTGGGG
GATGCTCGGGGTTGGAGGGGTCGATCTCGAGGTAGATTGAATAGCACATG
TCTTTGTGGTTGCCATAGGGAAAATACATGAGCCGCCAGGAGTACCCCCG
CGCGTCTTGCACCCAGGAAGTCACGCATTTGTACGTGTCTGTGTCTTTCG
CTCGCAGTTTCGCTGCTGCGTAGTCGGCTAGGTCGGGGGCAGGCAAGGCG
GCGGTGAACTTCAGCATGCCAGGCTTGACGCAGGCCACCACCACCTGCCC
CACCGCAACGTCCTCGGAACTCGGAAAAACACTGTCGTTGTCCACGTCTG
CGTCCACAACAGCCTTTTCTTTTGCAGGCGGAACGACGGCGGGCTCCGTG
GTGGTGGCGGCGATGGGACTGGCATTGGCACCTTCCATCGGATTTGTCAT
CACGTCAGCTTCTCCTTCCTCCGTGTCCAGGGCCCGTTGGATACCCCCAC
ACCCACTTTGTGGTGGCATCTTCATCTCCATAACTTTGTGTCGTGCCTCG
GGGGAATGCATGGCTCCGTTGCCGCCCTGGTCTGGGTGAAAGTCAGCTGT
CTCCTCCTGAGGCTTGCCTAGCGCTGCAGGCTTCCGGACCGGCGAGGTGG
ATCCCACAGGAGGCATCAGCAGTCGCTAGAAACTTGCCTCGGAAATTCAG
GCGTTCCTGTCACGCGTGGTGCTGGCTGTATGGAGAAGGAAAGAGGGAAA
AATATATATGGGTTCGTAAGTGCCTTACCTAGTACACGGGCGATTGCATT
GAAATTGAGGACGAAGAATTGGGGAGTTCGCTTGCGTGCATGTCGCTCAC
AAGATATGCGGCCAAAACTTGGCCCCGCTTCCTACATGACAAGGCTGGAC
CAGGGTGTGATCGGAATTATGAGTTCATTTTTGGGGCTTGCTTCACCCCT
TGTGTGGCAGGACCCCTTCCGCTCTCATTCCACCCCACCCCCACCATTGA
CACCCCCAGCCTGCACGTATACACAGCCCCGTAGATACACACAATCCAAC
CAGGCGCCCACCAACCATCTAATCGGCCTCACTCCTCGCTTTACCACTAC
TCCATTCATTATAAGGATCCGCCCACTACTCCATTCATTATAAGGATCCG
CCCGCCGCACACGCAACTATCTGGAAGCCGACTATTTGCCCCCCCCCAAA
ATCATGGCGGATGGCATCTTGCAAGCATTGGTAGGGCCAACGCAAGACAC
GCTGAACCAGCACTGGGCCCAAGGTAAATGGATAAATTGATTAAGAGACT
GGATGTGGAGGCATAATAATAATGTACTATGGTCTCTGTCGGGAAGGCTG
CCTTAGCCATCAGCATACCCCGCTGACCCTCTCCTCATCCCCACCACCCA
TCGCCCAATCAAACCAGGCAAGGCCAAAAGCTTCGGCTTCCAAATGATGA
TGAAGATGGGTTGGAGCGATGGAAGGGGTCTGGGAAGGGAGCTACAGGGG
AATGCCAAGCACTTGACCGTGAGCAAGAAAGTGGACAACGCTGGCTTGGG
CAGCGTCAAAGACGAAACAGGGAACGCAGGCTGGACAGAGGCCTCCGCCA
GCTTTGACAGCGTTCTCAGCAAACTGAATGCCCACTACGGGGGGCAACGG
GAAGCGGCACAAAAGAAGTGGGAGCAGAAAGAAAAGAAGAGGGGCAACAA
GAGCAGGAAGAAGGAAGGGGGAGGAACGGCTTCAGGGCTCTTGCGGCATC
CCAAGTTGCTGCAGAGTAAGAACATCCGGAAATACAGCGCGCATGACATG
CAAGCTATTCTTGGGATTAGATGTGTAGATGCGACACCATCGAGCCAGGG
ATCTGGGGAGGGCAGAGGGGAGGCGCCTTCGCTATGGTCAGCTTTGGCTG
GTGCTTCGAGTGGAGCTTGTAAAAAAAGTGATGATATGGGCAGTAGGACG
AAGGAAAAATGGAATAAGAAAAAGAGGGAGCGTCGCAACAGCATTTGTAT
TAATAGTTGTAGTGGTGGAGAAGCGAAGGAAGACGGAAAAAAGGAGGAAA
CAACCAAGAAGAGTAAAAAAGAAATGGTGCGGCAAGACGAGGATACTGAC
AGCAAGGAAGGGCGAGCGGAGCAGAAACAAGCCACAAAACGAAAGAGAAG
AGAGGAGAAGGCAAAGACATCGGAGGCGAAAGTTTTATCTACTGGAGGTA
AGAAGAAAAGCAAAAGAAAGAAGGATTGTGAGTGAATGAAGAAAAATGCC
AGTCACTGACCAACAAATATCTGAGAACCCAGGGAAACCTAAGGGAAATT
GAGATGTTGTGAACGAAATAAAGGAATGAAAAAAAATTATTATATTAATC
TACGAAG back to topCoding sequence (CDS) from alignment at chr17:430492..434048- >NO17G01410.1 ID=NO17G01410.1|Name=NO17G01410.1|organism=Nannochloropsis oceanica|type=CDS|length=888bp|location=Sequence derived from alignment at chr17:430492..434048- (Nannochloropsis oceanica) ATGGCGGATGGCATCTTGCAAGCATTGGTAGGGCCAACGCAAGACACGCT GAACCAGCACTGGGCCCAAGGCAAGGCCAAAAGCTTCGGCTTCCAAATGA TGATGAAGATGGGTTGGAGCGATGGAAGGGGTCTGGGAAGGGAGCTACAG GGGAATGCCAAGCACTTGACCGTGAGCAAGAAAGTGGACAACGCTGGCTT GGGCAGCGTCAAAGACGAAACAGGGAACGCAGGCTGGACAGAGGCCTCCG CCAGCTTTGACAGCGTTCTCAGCAAACTGAATGCCCACTACGGGGGGCAA CGGGAAGCGGCACAAAAGAAGTGGGAGCAGAAAGAAAAGAAGAGGGGCAA CAAGAGCAGGAAGAAGGAAGGGGGAGGAACGGCTTCAGGGCTCTTGCGGC ATCCCAAGTTGCTGCAGAGTAAGAACATCCGGAAATACAGCGCGCATGAC ATGCAAGCTATTCTTGGGATTAGATGTGTAGATGCGACACCATCGAGCCA GGGATCTGGGGAGGGCAGAGGGGAGGCGCCTTCGCTATGGTCAGCTTTGG CTGGTGCTTCGAGTGGAGCTTGTAAAAAAAGTGATGATATGGGCAGTAGG ACGAAGGAAAAATGGAATAAGAAAAAGAGGGAGCGTCGCAACAGCATTTG TATTAATAGTTGTAGTGGTGGAGAAGCGAAGGAAGACGGAAAAAAGGAGG AAACAACCAAGAAGAGTAAAAAAGAAATGGTGCGGCAAGACGAGGATACT GACAGCAAGGAAGGGCGAGCGGAGCAGAAACAAGCCACAAAACGAAAGAG AAGAGAGGAGAAGGCAAAGACATCGGAGGCGAAAGTTTTATCTACTGGAG GTAAGAAGAAAAGCAAAAGAAAGAAGGATTGTGAGTGA back to top
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