NO17G01390.1, NO17G01390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01390.1
Unique NameNO17G01390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1404
Alignment locationchr17:426793..428281 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:426793..428281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01390.1 vs.
Match: EWM24266.1 (proly 4-hydroxylase [Nannochloropsis gaditana])

HSP 1 Score: 632.1 bits (1629), Expect = 1.400e-177
Identity = 311/482 (64.52%), Postives = 372/482 (77.18%), Query Frame = 0 
Query:    1 MKSSSSI------INDKNLCGSSRSGSSNHDHALHRCPLQKCNGSKRGGGYDGSFMAMLCGALGAALVGYGVGYFYRNDSHTLMDTFRRILA---------KGSTPKFATGPSLVGCTISNLFATQPVHGMHLVCIQHSPTGLFATVFIDGQNGTQTEISAPANDFQGLRTILEEELMLAPFGRRDPRGPRGMETPNTQQPWAMFTPQGLPVDSLLDLQEGANDILLYEGGRFIWPGVREGHITRVTQLDGLGSIDMRTLSMSPLVFAVDGFLLAEECQYIRETAQPHMRQSGVKLMDHDKGKAATEWRTSSTHFLPTRRHEGLQRIDRRVAGLTRQPVAFQEDVQVLRYEHTQRYDTHHDYFDRRLYAKDPDTIKLIDGGKRNRMATVLWYLSDVSAGGETIFPLYNSRGEMHEFRNCERMHGALRSPPKEGSVIMFYSLLPNGDLDHRSLHGSCAVKDGVKWAANKWIWNDEISHILGHA 468
            MKS+ S+      IN  N C   +  +++ +   HR  L     S+      GS   ++ G LGA L  Y  GYF+RN++   +D++ RIL+         +       +GPSL GC+IS LFA +PVHGMHL CIQH+PTGL+AT+F+DGQN T+ E+ A  NDFQGLRT+L + L LAP GRR+  GPR  ETPNTQ+PW+MF+PQG+ +DSLLDLQEGAND+LLYEGGRFIWPGVREG++T+VT LD LGS+ M+TLSMSPLVF+V+ FLL EEC YIR+ A+PHMRQSGVKLMDHDKGKAAT+WRTSSTHFL ++ H  +Q +DRRVAGLTRQPV+ QEDVQVLRYE TQRYD HHD+FDRRLYA+DPDT+KLID GKRNRMATVLWYLSDV  GGETIFPL+N     ++ R+CERM GALR PPKEGSVI+FYSLLPNGDLD RSLHGSCAVK GVKWAANKWIW+DEI+ ILG A
Sbjct:    2 MKSTRSVNKDTNEINKMNSCKDVKGAAASRNILQHR--LIGTKKSEWVKNLHGSLAIIVVGTLGA-LASYLAGYFWRNEAAKPLDSYERILSTVYPHDSAFRTEQNSTVSGPSLAGCSISTLFADEPVHGMHLGCIQHTPTGLYATMFMDGQNHTRREVIASMNDFQGLRTLLGDRLGLAPVGRRNGEGPRDKETPNTQKPWSMFSPQGIAIDSLLDLQEGANDVLLYEGGRFIWPGVREGYVTQVTALDRLGSVKMQTLSMSPLVFSVENFLLPEECTYIRDVAEPHMRQSGVKLMDHDKGKAATDWRTSSTHFLASKHHARIQSVDRRVAGLTRQPVSHQEDVQVLRYESTQRYDAHHDFFDRRLYARDPDTLKLIDNGKRNRMATVLWYLSDVLQGGETIFPLHNGGEISYDSRHCERMKGALRCPPKEGSVIIFYSLLPNGDLDDRSLHGSCAVKHGVKWAANKWIWSDEIAPILGRA 480
The following BLAST results are available for this feature:
BLAST of NO17G01390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24266.11.400e-17764.52proly 4-hydroxylase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01390NO17G01390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01390.1NO17G01390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01390.1.cds1NO17G01390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01390.1.cds2NO17G01390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01390.1 ID=NO17G01390.1|Name=NO17G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp
ATGAAGTCCAGTAGCAGCATCATTAACGACAAGAACTTATGCGGCAGCAG
CAGAAGCGGCAGCAGCAACCATGATCATGCCCTGCACCGCTGTCCGCTCC
AAAAATGCAATGGCTCGAAACGCGGAGGAGGGTACGACGGCAGCTTCATG
GCGATGCTGTGCGGTGCCTTGGGGGCAGCTTTGGTGGGCTATGGAGTGGG
ATACTTCTACAGGAACGATTCTCACACACTCATGGACACTTTCCGACGCA
TTTTGGCCAAAGGCTCCACCCCAAAGTTCGCGACGGGCCCATCCCTGGTA
GGCTGTACCATCTCGAACCTCTTTGCCACCCAGCCTGTGCACGGTATGCA
CTTGGTCTGCATTCAGCATTCCCCCACTGGCCTCTTCGCGACCGTCTTCA
TTGACGGCCAAAACGGCACCCAAACCGAAATTTCAGCGCCTGCCAACGAC
TTTCAAGGCCTGCGCACAATTCTGGAAGAAGAGCTGATGCTAGCCCCGTT
CGGACGCCGTGACCCCCGCGGCCCTCGAGGCATGGAGACCCCCAACACGC
AACAGCCTTGGGCCATGTTCACCCCTCAGGGCCTGCCTGTGGATAGCTTG
CTTGACCTGCAAGAAGGAGCAAACGACATATTGCTGTATGAAGGAGGACG
CTTCATCTGGCCGGGGGTAAGGGAAGGACATATCACAAGGGTAACCCAGT
TGGACGGGCTAGGCTCCATCGACATGCGGACCCTCTCCATGTCCCCCCTC
GTCTTCGCTGTGGACGGCTTCTTGCTGGCGGAGGAGTGTCAGTATATCCG
GGAGACCGCCCAACCTCACATGAGGCAGTCGGGGGTAAAATTGATGGACC
ACGATAAGGGTAAGGCTGCCACAGAGTGGCGCACAAGCTCCACCCATTTC
CTTCCCACCAGACGCCATGAAGGCCTGCAGCGAATCGATCGTCGTGTGGC
CGGATTGACGCGTCAGCCGGTTGCGTTTCAGGAGGATGTGCAGGTGTTGA
GGTACGAGCATACACAGCGGTATGATACGCACCATGACTACTTCGATCGT
CGTCTATATGCCAAGGACCCTGACACTATAAAGTTAATCGATGGTGGCAA
ACGAAATCGCATGGCCACAGTCCTGTGGTATCTAAGCGACGTCTCTGCAG
GTGGGGAAACTATCTTTCCGCTCTACAATAGCCGTGGGGAAATGCACGAA
TTTCGCAATTGCGAGAGGATGCATGGCGCTCTGCGATCTCCGCCCAAAGA
AGGGAGTGTCATTATGTTCTACTCCTTGCTCCCTAATGGCGACCTGGACC
ACCGCAGTCTCCATGGTTCTTGTGCTGTCAAGGATGGAGTCAAGTGGGCG
GCCAACAAGTGGATATGGAATGACGAGATTTCTCATATTCTTGGGCATGC
TTGA
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protein sequence of NO17G01390.1

>NO17G01390.1-protein ID=NO17G01390.1-protein|Name=NO17G01390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MKSSSSIINDKNLCGSSRSGSSNHDHALHRCPLQKCNGSKRGGGYDGSFM
AMLCGALGAALVGYGVGYFYRNDSHTLMDTFRRILAKGSTPKFATGPSLV
GCTISNLFATQPVHGMHLVCIQHSPTGLFATVFIDGQNGTQTEISAPAND
FQGLRTILEEELMLAPFGRRDPRGPRGMETPNTQQPWAMFTPQGLPVDSL
LDLQEGANDILLYEGGRFIWPGVREGHITRVTQLDGLGSIDMRTLSMSPL
VFAVDGFLLAEECQYIRETAQPHMRQSGVKLMDHDKGKAATEWRTSSTHF
LPTRRHEGLQRIDRRVAGLTRQPVAFQEDVQVLRYEHTQRYDTHHDYFDR
RLYAKDPDTIKLIDGGKRNRMATVLWYLSDVSAGGETIFPLYNSRGEMHE
FRNCERMHGALRSPPKEGSVIMFYSLLPNGDLDHRSLHGSCAVKDGVKWA
ANKWIWNDEISHILGHA*
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mRNA from alignment at chr17:426793..428281-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01390.1 ID=NO17G01390.1|Name=NO17G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1489bp|location=Sequence derived from alignment at chr17:426793..428281- (Nannochloropsis oceanica)
ATGAAGTCCAGTAGCAGCATCATTAACGACAAGAACTTATGCGGCAGCAG
CAGAAGCGGCAGCAGCAACCATGATCATGCCCTGCACCGCTGTCCGCTCC
AAAAATGCAATGGCTCGAAACGCGGAGGAGGGTACGACGGCAGCTTCATG
GCGATGCTGTGCGGTGCCTTGGGGGCAGCTTTGGTGGGCTATGGAGTGGG
ATACTTCTACAGGAACGATTCTCACACACTCATGGACACTTTCCGACGCA
TTTTGGCCAAAGGCTCCACCCCAAAGTTCGCGACGGGCCCATCCCTGGTA
GGCTGTACCATCTCGAACCTCTTTGCCACCCAGCCTGTGCACGGTATGCA
CTTGGTCTGCATTCAGCATTCGTAAGTAATCAGCATTTTGGTCTTAATCT
ATTGAAGTTTCTACTCACACAACTCCCCTACCCATCCGCCTCACTCCACT
CCACAGCCCCACTGGCCTCTTCGCGACCGTCTTCATTGACGGCCAAAACG
GCACCCAAACCGAAATTTCAGCGCCTGCCAACGACTTTCAAGGCCTGCGC
ACAATTCTGGAAGAAGAGCTGATGCTAGCCCCGTTCGGACGCCGTGACCC
CCGCGGCCCTCGAGGCATGGAGACCCCCAACACGCAACAGCCTTGGGCCA
TGTTCACCCCTCAGGGCCTGCCTGTGGATAGCTTGCTTGACCTGCAAGAA
GGAGCAAACGACATATTGCTGTATGAAGGAGGACGCTTCATCTGGCCGGG
GGTAAGGGAAGGACATATCACAAGGGTAACCCAGTTGGACGGGCTAGGCT
CCATCGACATGCGGACCCTCTCCATGTCCCCCCTCGTCTTCGCTGTGGAC
GGCTTCTTGCTGGCGGAGGAGTGTCAGTATATCCGGGAGACCGCCCAACC
TCACATGAGGCAGTCGGGGGTAAAATTGATGGACCACGATAAGGGTAAGG
CTGCCACAGAGTGGCGCACAAGCTCCACCCATTTCCTTCCCACCAGACGC
CATGAAGGCCTGCAGCGAATCGATCGTCGTGTGGCCGGATTGACGCGTCA
GCCGGTTGCGTTTCAGGAGGATGTGCAGGTGTTGAGGTACGAGCATACAC
AGCGGTATGATACGCACCATGACTACTTCGATCGTCGTCTATATGCCAAG
GACCCTGACACTATAAAGTTAATCGATGGTGGCAAACGAAATCGCATGGC
CACAGTCCTGTGGTATCTAAGCGACGTCTCTGCAGGTGGGGAAACTATCT
TTCCGCTCTACAATAGCCGTGGGGAAATGCACGAATTTCGCAATTGCGAG
AGGATGCATGGCGCTCTGCGATCTCCGCCCAAAGAAGGGAGTGTCATTAT
GTTCTACTCCTTGCTCCCTAATGGCGACCTGGACCACCGCAGTCTCCATG
GTTCTTGTGCTGTCAAGGATGGAGTCAAGTGGGCGGCCAACAAGTGGATA
TGGAATGACGAGATTTCTCATATTCTTGGGCATGCTTGA
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Coding sequence (CDS) from alignment at chr17:426793..428281-

>NO17G01390.1 ID=NO17G01390.1|Name=NO17G01390.1|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at chr17:426793..428281- (Nannochloropsis oceanica)
ATGAAGTCCAGTAGCAGCATCATTAACGACAAGAACTTATGCGGCAGCAG
CAGAAGCGGCAGCAGCAACCATGATCATGCCCTGCACCGCTGTCCGCTCC
AAAAATGCAATGGCTCGAAACGCGGAGGAGGGTACGACGGCAGCTTCATG
GCGATGCTGTGCGGTGCCTTGGGGGCAGCTTTGGTGGGCTATGGAGTGGG
ATACTTCTACAGGAACGATTCTCACACACTCATGGACACTTTCCGACGCA
TTTTGGCCAAAGGCTCCACCCCAAAGTTCGCGACGGGCCCATCCCTGGTA
GGCTGTACCATCTCGAACCTCTTTGCCACCCAGCCTGTGCACGGTATGCA
CTTGGTCTGCATTCAGCATTCCCCCACTGGCCTCTTCGCGACCGTCTTCA
TTGACGGCCAAAACGGCACCCAAACCGAAATTTCAGCGCCTGCCAACGAC
TTTCAAGGCCTGCGCACAATTCTGGAAGAAGAGCTGATGCTAGCCCCGTT
CGGACGCCGTGACCCCCGCGGCCCTCGAGGCATGGAGACCCCCAACACGC
AACAGCCTTGGGCCATGTTCACCCCTCAGGGCCTGCCTGTGGATAGCTTG
CTTGACCTGCAAGAAGGAGCAAACGACATATTGCTGTATGAAGGAGGACG
CTTCATCTGGCCGGGGGTAAGGGAAGGACATATCACAAGGGTAACCCAGT
TGGACGGGCTAGGCTCCATCGACATGCGGACCCTCTCCATGTCCCCCCTC
GTCTTCGCTGTGGACGGCTTCTTGCTGGCGGAGGAGTGTCAGTATATCCG
GGAGACCGCCCAACCTCACATGAGGCAGTCGGGGGTAAAATTGATGGACC
ACGATAAGGGTAAGGCTGCCACAGAGTGGCGCACAAGCTCCACCCATTTC
CTTCCCACCAGACGCCATGAAGGCCTGCAGCGAATCGATCGTCGTGTGGC
CGGATTGACGCGTCAGCCGGTTGCGTTTCAGGAGGATGTGCAGGTGTTGA
GGTACGAGCATACACAGCGGTATGATACGCACCATGACTACTTCGATCGT
CGTCTATATGCCAAGGACCCTGACACTATAAAGTTAATCGATGGTGGCAA
ACGAAATCGCATGGCCACAGTCCTGTGGTATCTAAGCGACGTCTCTGCAG
GTGGGGAAACTATCTTTCCGCTCTACAATAGCCGTGGGGAAATGCACGAA
TTTCGCAATTGCGAGAGGATGCATGGCGCTCTGCGATCTCCGCCCAAAGA
AGGGAGTGTCATTATGTTCTACTCCTTGCTCCCTAATGGCGACCTGGACC
ACCGCAGTCTCCATGGTTCTTGTGCTGTCAAGGATGGAGTCAAGTGGGCG
GCCAACAAGTGGATATGGAATGACGAGATTTCTCATATTCTTGGGCATGC
TTGA
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Synonyms
Publications