NO17G01380.1, NO17G01380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01380.1
Unique NameNO17G01380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1128
Alignment locationchr17:424869..426466 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:424869..426466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01380.1 vs.
Match: EWM24235.1 (urease accessory protein ureg [Nannochloropsis gaditana])

HSP 1 Score: 436.4 bits (1121), Expect = 8.900e-119
Identity = 255/368 (69.29%), Postives = 284/368 (77.17%), Query Frame = 0 
Query:    1 MSPTTHPKTHPQHHHAAPVDNEAGSSKKHHDAEDRHHHHHGRGEHEHRHHAG-EHTHAHTHGHGHHEQEHSHAHSHDIPHHSHHHHHHHHEKEEGASEDGAHAHSHRHAHHNSLSHHHGHGHGEHGHTHEPLESPGTFDSREQPLKRDYLERAFTVGVGGPVGSGKTALVYALCKALRRDHSIAAITNDIFTQEDGEFLLRHSALEPGRIQAIETGGCPHAAIREDISANLAACEGMTAKHNADIVLVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLAEAVGADLERMASEAAVMRGEGPVVMAQVKFDVGVQDILQYILTSWKLATGIIRPKKTTPVGSGDVEE 368
            MS T H K      H +    E  S+ +H + ++ HHH H   EH H    G EH  AH       E +  H H HD   + HHHHHH+H+    A + G H  S RH+H+          + EHGHTHEP+ESPG F +R+QPLKRDYLERAFTVGVGGPVGSGKTAL+YALCKALR D+SIAAITNDIFTQEDGEFLLRHSALEP RI AIETGGCPHAAIREDISANLA CEGMT KHNADI+LVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLA++VGADLERMA EAAVMRG+GPVVMAQVKFD+GVQDI+ +IL +WKLATG+IRPKKT+  G  DV E
Sbjct:    1 MSSTPHSK------HVSTEGREKVSTARHPEKDNGHHHQH---EHHHSTSRGDEHCDAHNKVV---EDQRKHIHDHD---YHHHHHHHYHDNSMSAQQKGDHLPSKRHSHN----------YDEHGHTHEPMESPGAFHTRDQPLKRDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWKLATGVIRPKKTS--GIRDVAE 341
The following BLAST results are available for this feature:
BLAST of NO17G01380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24235.18.900e-11969.29urease accessory protein ureg [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01380NO17G01380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01380.1NO17G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01380.1.cds1NO17G01380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01380.1.cds2NO17G01380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01380.1.cds3NO17G01380.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01380.1.cds4NO17G01380.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01380.1 ID=NO17G01380.1|Name=NO17G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1128bp
ATGAGCCCCACGACTCACCCCAAGACTCACCCTCAGCATCATCACGCGGC
GCCTGTCGACAACGAGGCGGGGTCTTCTAAGAAGCATCACGACGCGGAGG
ACCGCCACCATCATCATCACGGGCGCGGGGAGCATGAGCACCGCCACCAC
GCGGGCGAGCACACCCACGCCCACACCCACGGTCATGGACACCATGAACA
AGAACACAGTCATGCGCACAGCCACGATATTCCGCATCACTCCCACCATC
ATCACCACCACCACCACGAGAAGGAGGAGGGTGCTTCCGAAGATGGCGCG
CACGCCCACTCGCACAGACATGCCCACCACAACTCCCTTTCTCATCATCA
CGGTCATGGCCATGGCGAGCACGGCCATACCCATGAACCCCTTGAATCCC
CTGGTACCTTTGATTCGCGCGAACAGCCCTTGAAACGGGACTATTTGGAG
CGAGCTTTCACCGTGGGTGTGGGCGGGCCAGTGGGCTCGGGCAAGACGGC
CTTGGTGTATGCGCTGTGCAAGGCTCTTCGTCGCGACCATAGCATTGCTG
CGATCACCAACGACATTTTTACCCAAGAAGATGGAGAATTCCTCCTCCGC
CACTCCGCGCTCGAACCAGGTCGCATTCAAGCCATCGAGACGGGTGGGTG
CCCACACGCTGCTATCCGCGAGGACATCTCTGCGAACCTTGCCGCCTGTG
AAGGCATGACGGCCAAGCACAACGCTGATATAGTTCTTGTTGAGTCGGGT
GGTGATAATCTTGCCGCAAACTTCAGTCGAGAGCTTGCGGATTACATAAT
TTATGTGATTGATGTAGCCGGTGGCGACAAGGTGCCGCGCAAAGGCGGGC
CGGGTATTACACAGTCCGACCTCTTAGTTATCAACAAGACGGATCTTGCC
GAGGCTGTCGGGGCGGACTTGGAGCGCATGGCAAGCGAGGCGGCAGTGAT
GCGTGGGGAGGGACCCGTGGTTATGGCTCAGGTCAAGTTTGATGTTGGAG
TGCAAGACATTTTGCAATACATTCTGACATCTTGGAAACTGGCGACAGGC
ATCATCCGGCCCAAAAAGACCACGCCGGTGGGGTCCGGAGATGTGGAGGA
GGGGGTGATAACAGAAGGGACAGTATAG
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protein sequence of NO17G01380.1

>NO17G01380.1-protein ID=NO17G01380.1-protein|Name=NO17G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MSPTTHPKTHPQHHHAAPVDNEAGSSKKHHDAEDRHHHHHGRGEHEHRHH
AGEHTHAHTHGHGHHEQEHSHAHSHDIPHHSHHHHHHHHEKEEGASEDGA
HAHSHRHAHHNSLSHHHGHGHGEHGHTHEPLESPGTFDSREQPLKRDYLE
RAFTVGVGGPVGSGKTALVYALCKALRRDHSIAAITNDIFTQEDGEFLLR
HSALEPGRIQAIETGGCPHAAIREDISANLAACEGMTAKHNADIVLVESG
GDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLA
EAVGADLERMASEAAVMRGEGPVVMAQVKFDVGVQDILQYILTSWKLATG
IIRPKKTTPVGSGDVEEGVITEGTV*
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mRNA from alignment at chr17:424869..426466-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01380.1 ID=NO17G01380.1|Name=NO17G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1598bp|location=Sequence derived from alignment at chr17:424869..426466- (Nannochloropsis oceanica)
ATGAGCCCCACGACTCACCCCAAGACTCACCCTCAGCATCATCACGCGGC
GCCTGTCGACAACGAGGCGGGGTCTTCTAAGAAGCATCACGGTTAGTTTC
TTTTGCTTGCACAAAGGGCTCTCCTCCCATTTCCCCTGCCACACGCACGT
GCGCGCGCACACACACACACACACAAAAAGTTTGTATTTTAAGTTCAACA
CATATTTATTGGCGTGCGGGCACCGCGGTCGATGCAGGATGGCCGCGGCA
ATTTTCTTCTGCCTTATCTTCAACCTATCTCTTGTATTCCCCCTTGACAG
ACGCGGAGGACCGCCACCATCATCATCACGGTACGTGACTCATGCTTAGA
GACGGCTGCTCATTTCTCACTATTCTTCTTCTGACTCCTCTTTCATGTCC
CTTATTCTTCCTTTGCAGGGCGCGGGGAGCATGAGCACCGCCACCACGCG
GGCGAGCACACCCACGCCCACACCCACGGTCATGGACACCATGAACAAGA
ACACAGTCATGCGCACAGCCACGATATTCCGCATCACTCCCACCATCATC
ACCACCACCACCACGAGAAGGAGGAGGGTGCTTCCGAAGATGGCGCGCAC
GCCCACTCGCACAGACATGCCCACCACAACTCCCTTTCTCATCATCACGG
TCATGGCCATGGCGAGCACGGCCATACCCATGAACCCCTTGAATCCCCTG
GTACCTTTGATTCGCGCGAACAGCCCTTGAAACGGGACTATTTGGAGCGA
GCTTTCACCGTGGGTGTGGGCGGGCCAGTGGGCTCGGGCAAGACGGCCTT
GGTGTATGCGCTGTGCAAGGCTCTTCGTCGCGACCATAGCATTGCTGCGG
TAAGCATGGCGGGGCGAGGGAGGGGGTGGAAGAAGAAATTTGTACTAAGT
GGTAGTGGGCGTATGTAGTGTTCCGCCCTGACCTTTTCCATTCCTAAGCC
AGTCGATATATCAACCACCCACCCCTCAACTCTATTTCTATCTCTCCTTT
GACTCCACCCCTGTCTTTCAAGATCACCAACGACATTTTTACCCAAGAAG
ATGGAGAATTCCTCCTCCGCCACTCCGCGCTCGAACCAGGTCGCATTCAA
GCCATCGAGACGGGTGGGTGCCCACACGCTGCTATCCGCGAGGACATCTC
TGCGAACCTTGCCGCCTGTGAAGGCATGACGGCCAAGCACAACGCTGATA
TAGTTCTTGTTGAGTCGGGTGGTGATAATCTTGCCGCAAACTTCAGTCGA
GAGCTTGCGGATTACATAATTTATGTGATTGATGTAGCCGGTGGCGACAA
GGTGCCGCGCAAAGGCGGGCCGGGTATTACACAGTCCGACCTCTTAGTTA
TCAACAAGACGGATCTTGCCGAGGCTGTCGGGGCGGACTTGGAGCGCATG
GCAAGCGAGGCGGCAGTGATGCGTGGGGAGGGACCCGTGGTTATGGCTCA
GGTCAAGTTTGATGTTGGAGTGCAAGACATTTTGCAATACATTCTGACAT
CTTGGAAACTGGCGACAGGCATCATCCGGCCCAAAAAGACCACGCCGGTG
GGGTCCGGAGATGTGGAGGAGGGGGTGATAACAGAAGGGACAGTATAG
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Coding sequence (CDS) from alignment at chr17:424869..426466-

>NO17G01380.1 ID=NO17G01380.1|Name=NO17G01380.1|organism=Nannochloropsis oceanica|type=CDS|length=1128bp|location=Sequence derived from alignment at chr17:424869..426466- (Nannochloropsis oceanica)
ATGAGCCCCACGACTCACCCCAAGACTCACCCTCAGCATCATCACGCGGC
GCCTGTCGACAACGAGGCGGGGTCTTCTAAGAAGCATCACGACGCGGAGG
ACCGCCACCATCATCATCACGGGCGCGGGGAGCATGAGCACCGCCACCAC
GCGGGCGAGCACACCCACGCCCACACCCACGGTCATGGACACCATGAACA
AGAACACAGTCATGCGCACAGCCACGATATTCCGCATCACTCCCACCATC
ATCACCACCACCACCACGAGAAGGAGGAGGGTGCTTCCGAAGATGGCGCG
CACGCCCACTCGCACAGACATGCCCACCACAACTCCCTTTCTCATCATCA
CGGTCATGGCCATGGCGAGCACGGCCATACCCATGAACCCCTTGAATCCC
CTGGTACCTTTGATTCGCGCGAACAGCCCTTGAAACGGGACTATTTGGAG
CGAGCTTTCACCGTGGGTGTGGGCGGGCCAGTGGGCTCGGGCAAGACGGC
CTTGGTGTATGCGCTGTGCAAGGCTCTTCGTCGCGACCATAGCATTGCTG
CGATCACCAACGACATTTTTACCCAAGAAGATGGAGAATTCCTCCTCCGC
CACTCCGCGCTCGAACCAGGTCGCATTCAAGCCATCGAGACGGGTGGGTG
CCCACACGCTGCTATCCGCGAGGACATCTCTGCGAACCTTGCCGCCTGTG
AAGGCATGACGGCCAAGCACAACGCTGATATAGTTCTTGTTGAGTCGGGT
GGTGATAATCTTGCCGCAAACTTCAGTCGAGAGCTTGCGGATTACATAAT
TTATGTGATTGATGTAGCCGGTGGCGACAAGGTGCCGCGCAAAGGCGGGC
CGGGTATTACACAGTCCGACCTCTTAGTTATCAACAAGACGGATCTTGCC
GAGGCTGTCGGGGCGGACTTGGAGCGCATGGCAAGCGAGGCGGCAGTGAT
GCGTGGGGAGGGACCCGTGGTTATGGCTCAGGTCAAGTTTGATGTTGGAG
TGCAAGACATTTTGCAATACATTCTGACATCTTGGAAACTGGCGACAGGC
ATCATCCGGCCCAAAAAGACCACGCCGGTGGGGTCCGGAGATGTGGAGGA
GGGGGTGATAACAGAAGGGACAGTATAG
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Synonyms
Publications