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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr17 | genome | chr17:367945..369734 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G01160.1 vs.
Match: EWM24318.1 (Amino acid transporter, transmembrane [Nannochloropsis gaditana]) HSP 1 Score: 494.6 bits (1272), Expect = 3.600e-136 Identity = 281/457 (61.49%), Postives = 336/457 (73.52%), Query Frame = 0
Query: 41 QQRQTAAKHAINVLKSFIGSNFLSVPFAFAAAGSLLGPLAVALIASVSGLGCLLLVQIRIDLQQRLQHQQ-----QHRPAVETYAQVAGALLGRPGYYLVEVFLILTQVGYCIGYVIYMSTAIHQFAGESLSLVYIFFGLVTLPLICLCLIPDLKHFLPFAFLSNVALLVGFLAVLIASVSRARDQGIFYVTWGVVDARKLPLAFGNIVASFEGIGTILSVEGSMARDQVRGYYPLLLKQTLLLVTILFSAFGIVGFGAFGKELCSVVLTNLPMGVCADVARVALIVGLFCTYGFQMYPVYQMIDLRLL-GEDVDTSSPYFFPGGSSLLAHDGYGALHFSPSLADAAPAAAVGTALGRRNIR-AATYLGVRVGVVLFTSIVAYLLPEFELLVALVGSIGGGMLAFIMPGILGWAMYKETATRKEKGRYGCLIAFGVVGGVIGAGHALHDLIYGQSQC 491
++RQ AAKH+INVLKSF+GSN+LS+PFA AAAGSL GPL +A+IA +SG GCLLLV+IR DL + QH+Q VETYAQVAG +LG GYY+VE FLILTQ GYCIGYVIYMSTA+ QF G SLS I FGL+ L+CLCL+PDLKHFLPF+F SN+ALL+GFLA++ A +S AR G F ++WG+ D K+PLAFGNIVASFEGIGTILSVEGSMA+DQ R YP LL++TLLLVT+LFS FGIVG GA+G+ELCSV+L N+ G AD AR LIVGLF TYGFQMYPV++MIDLRL E D +S F S LL +L S + G L R ++ A Y+GVRVG+VL TSI+AY +PEFELLVAL+GS+G GMLAF++PGILG +Y+ +A K Y LI GVVGG IGA +ALHDLI G SQC
Sbjct: 21 KKRQRAAKHSINVLKSFLGSNYLSIPFAVAAAGSLFGPLLIAIIAFISGFGCLLLVRIRKDLLR--QHRQIDVNGDGTCVVETYAQVAGVVLGSAGYYVVEAFLILTQAGYCIGYVIYMSTALRQFTGASLSQQVITFGLLFPSLVCLCLVPDLKHFLPFSFASNIALLMGFLAIIAACISHARAIGTFDLSWGISDIHKIPLAFGNIVASFEGIGTILSVEGSMAKDQSRETYPPLLRKTLLLVTLLFSLFGIVGLGAYGEELCSVILNNISRGAYADAARGCLIVGLFFTYGFQMYPVFEMIDLRLFPNEGPDHAS---FSEVSPLLTTGDNHSLDIS--------WESCGNDLRRHRMKMTAKYVGVRVGLVLTTSIIAYFVPEFELLVALIGSVGAGMLAFVVPGILGLVLYRNSALFYHKLSYISLIILGVVGGSIGAAYALHDLIQGHSQC 464
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G01160.1 ID=NO17G01160.1|Name=NO17G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1628bp
CGACAGGAGTTATGGCTCACGACGACAGGGACAACTACAACGATGATAAT
GGGGACAATCAGCCTCTCCAAACACTCCCCACCGCATCAACAGCCTCGTC
GTCATCACCACCACCTTATCCCCACGACACGCAGCAGCGGCAGACCGCGG
CCAAGCACGCCATCAACGTGCTCAAGTCCTTCATTGGCTCCAACTTCCTG
TCCGTGCCCTTTGCTTTTGCCGCGGCCGGCTCGCTGCTAGGCCCACTGGC
TGTCGCCTTAATTGCCAGCGTCAGTGGCCTTGGGTGTCTCCTTCTCGTTC
AAATCCGCATAGACCTGCAACAACGGCTGCAGCACCAACAACAGCACCGG
CCGGCGGTCGAGACGTACGCGCAGGTGGCTGGAGCGCTATTGGGGAGACC
CGGCTACTACCTCGTCGAGGTGTTTTTGATATTAACCCAGGTGGGGTACT
GCATTGGCTATGTCATTTATATGAGCACGGCCATTCATCAATTCGCAGGA
GAGTCTTTATCCCTAGTTTATATTTTCTTCGGCCTGGTCACTCTTCCACT
GATCTGCTTGTGCCTTATTCCAGATTTAAAGCATTTTTTGCCGTTCGCTT
TCTTGAGTAATGTGGCGTTGCTGGTGGGTTTTCTCGCTGTACTTATCGCG
AGCGTGTCCCGGGCGCGGGATCAGGGGATATTTTACGTTACTTGGGGTGT
GGTGGATGCACGTAAGCTACCGTTGGCATTTGGAAATATTGTGGCGTCAT
TTGAGGGGATTGGGACGATTTTGAGCGTGGAGGGGAGTATGGCCCGTGAT
CAAGTGAGGGGATATTACCCTCTGTTGTTGAAACAAACCCTGCTGCTTGT
AACAATTTTGTTTTCTGCTTTTGGGATAGTGGGCTTCGGGGCGTTTGGAA
AAGAATTGTGCAGTGTGGTTCTGACAAATTTGCCCATGGGGGTATGTGCG
GACGTGGCGCGGGTCGCTCTGATCGTAGGATTGTTTTGTACGTATGGCTT
TCAAATGTATCCGGTATATCAAATGATCGACTTGCGGCTGCTTGGAGAAG
ATGTAGACACCTCATCGCCCTATTTTTTCCCAGGAGGTTCGTCCCTCCTA
GCTCATGACGGATATGGTGCCTTGCACTTCTCACCATCACTTGCTGATGC
TGCTCCTGCAGCTGCTGTTGGCACCGCCCTCGGACGAAGAAATATAAGAG
CTGCGACCTACTTAGGGGTGCGTGTGGGCGTAGTGCTTTTTACGTCCATA
GTTGCTTACCTTCTGCCTGAATTTGAGCTGCTGGTGGCATTAGTGGGATC
CATAGGCGGGGGCATGCTTGCATTTATAATGCCGGGAATTTTGGGGTGGG
CCATGTATAAGGAGACGGCCACGAGGAAAGAGAAGGGGAGGTATGGCTGT
CTGATTGCGTTTGGGGTTGTTGGGGGGGTAATTGGAGCGGGCCACGCGCT
GCATGACTTGATTTATGGGCAATCGCAGTGCTAGACTATCTATGAAACAA
TGGACTGTCTTATTAGTAAGCATGTGTTTTAAAAGAGGCATGTCATAAAG
AAATGCGTGTGTGCACTCAGCAAATAAAGTACACTGGGAAGGAACACCTC
TTTTTATGAGCGTCCATACCATTTTAAC back to topprotein sequence of NO17G01160.1 >NO17G01160.1-protein ID=NO17G01160.1-protein|Name=NO17G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MAHDDRDNYNDDNGDNQPLQTLPTASTASSSSPPPYPHDTQQRQTAAKHA
INVLKSFIGSNFLSVPFAFAAAGSLLGPLAVALIASVSGLGCLLLVQIRI
DLQQRLQHQQQHRPAVETYAQVAGALLGRPGYYLVEVFLILTQVGYCIGY
VIYMSTAIHQFAGESLSLVYIFFGLVTLPLICLCLIPDLKHFLPFAFLSN
VALLVGFLAVLIASVSRARDQGIFYVTWGVVDARKLPLAFGNIVASFEGI
GTILSVEGSMARDQVRGYYPLLLKQTLLLVTILFSAFGIVGFGAFGKELC
SVVLTNLPMGVCADVARVALIVGLFCTYGFQMYPVYQMIDLRLLGEDVDT
SSPYFFPGGSSLLAHDGYGALHFSPSLADAAPAAAVGTALGRRNIRAATY
LGVRVGVVLFTSIVAYLLPEFELLVALVGSIGGGMLAFIMPGILGWAMYK
ETATRKEKGRYGCLIAFGVVGGVIGAGHALHDLIYGQSQC* back to topmRNA from alignment at chr17:367945..369734- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G01160.1 ID=NO17G01160.1|Name=NO17G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1790bp|location=Sequence derived from alignment at chr17:367945..369734- (Nannochloropsis oceanica)
CGACAGGAGTTATGGCTCACGACGACAGGGACAACTACAACGATGATAAT
GGGGACAATCAGCCTCTCCAAACACTCCCCACCGCATCAACAGCCTCGTC
GTCATCACCACCACCTTATCCCCACGACACGCAGCAGCGGCAGACCGCGG
CCAAGCACGCCATCAACGTGCTCAAGTCCTTCATTGGCTCCAACTTCCTG
TCCGTGCCCTTTGCTTTTGCCGCGGCCGGCTCGCTGCTAGGCCCACTGGC
TGTCGCCTTAATTGCCAGCGTCAGTGGCCTTGGGTGTCTCCTTCTCGTTC
AAATCCGCATAGACCTGCAACAACGGCTGCAGCACCAACAACAGCACCGG
CCGGCGGTCGAGACGTACGCGCAGGTGGCTGGAGCGCTATTGGGGAGACC
CGGCTACTACCTCGTCGAGGTGTTTTTGATATTAACCCAGGTGGGGTACT
GCATTGGCTATGTCATTTATATGAGCACGGCCATTCATCAATTCGCAGGA
GAGTCTTTATCCCTAGTTTATATTTTCTTCGGCCTGGTCACTCTTCCACT
GATCTGCTTGTGCCTTATTCCAGATTTAAAGCATTTTTTGCCGTTCGCTT
TCTTGAGTAATGTGGCGTTGCTGGTGGGTTTTCTCGCTGTACTTATCGCG
AGCGTGTCCCGGGCGCGGGATCAGGGGATATTTTACGTTACTTGGGGTGT
GGTGGATGCACGTAAGCTACCGTTGGCATTTGGAAATATTGTGGCGTCAT
TTGAGGGGATTGGGACGATTTTGAGCGTGGAGGGGAGTATGGCCCGTGAT
CAAGTGAGGGGATATTACCCTCTGTTGTTGAAACAAACCCTGCTGCTTGT
AACAATTTTGTTTTCTGCTTTTGGGATAGTGGGCTTCGGGGCGTTTGGAA
AAGAATTGTGCAGTGTGGTTCTGACAAATTTGCCCATGGGGGTATGTGCG
GACGTGGCGCGGGTCGCTCTGATCGTAGGATTGTTTTGTACGTGTAAGTG
ATGGTGGTTGTGTGGGCTTGTGTGCTCGGGGACGGTGAGAGGGGCGGAGA
GGACGTGAGCGGAAGAGATGGGCAACAAAGAATAGGCATGACCTCACCGC
CCACCCTCATCCCTCACTCTTCTCCCTGCACCTTATTCTCTACACTCCTG
GATAGATGGCTTTCAAATGTATCCGGTATATCAAATGATCGACTTGCGGC
TGCTTGGAGAAGATGTAGACACCTCATCGCCCTATTTTTTCCCAGGAGGT
TCGTCCCTCCTAGCTCATGACGGATATGGTGCCTTGCACTTCTCACCATC
ACTTGCTGATGCTGCTCCTGCAGCTGCTGTTGGCACCGCCCTCGGACGAA
GAAATATAAGAGCTGCGACCTACTTAGGGGTGCGTGTGGGCGTAGTGCTT
TTTACGTCCATAGTTGCTTACCTTCTGCCTGAATTTGAGCTGCTGGTGGC
ATTAGTGGGATCCATAGGCGGGGGCATGCTTGCATTTATAATGCCGGGAA
TTTTGGGGTGGGCCATGTATAAGGAGACGGCCACGAGGAAAGAGAAGGGG
AGGTATGGCTGTCTGATTGCGTTTGGGGTTGTTGGGGGGGTAATTGGAGC
GGGCCACGCGCTGCATGACTTGATTTATGGGCAATCGCAGTGCTAGACTA
TCTATGAAACAATGGACTGTCTTATTAGTAAGCATGTGTTTTAAAAGAGG
CATGTCATAAAGAAATGCGTGTGTGCACTCAGCAAATAAAGTACACTGGG
AAGGAACACCTCTTTTTATGAGCGTCCATACCATTTTAAC back to topCoding sequence (CDS) from alignment at chr17:367945..369734- >NO17G01160.1 ID=NO17G01160.1|Name=NO17G01160.1|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at chr17:367945..369734- (Nannochloropsis oceanica)
ATGGCTCACGACGACAGGGACAACTACAACGATGATAATGGGGACAATCA
GCCTCTCCAAACACTCCCCACCGCATCAACAGCCTCGTCGTCATCACCAC
CACCTTATCCCCACGACACGCAGCAGCGGCAGACCGCGGCCAAGCACGCC
ATCAACGTGCTCAAGTCCTTCATTGGCTCCAACTTCCTGTCCGTGCCCTT
TGCTTTTGCCGCGGCCGGCTCGCTGCTAGGCCCACTGGCTGTCGCCTTAA
TTGCCAGCGTCAGTGGCCTTGGGTGTCTCCTTCTCGTTCAAATCCGCATA
GACCTGCAACAACGGCTGCAGCACCAACAACAGCACCGGCCGGCGGTCGA
GACGTACGCGCAGGTGGCTGGAGCGCTATTGGGGAGACCCGGCTACTACC
TCGTCGAGGTGTTTTTGATATTAACCCAGGTGGGGTACTGCATTGGCTAT
GTCATTTATATGAGCACGGCCATTCATCAATTCGCAGGAGAGTCTTTATC
CCTAGTTTATATTTTCTTCGGCCTGGTCACTCTTCCACTGATCTGCTTGT
GCCTTATTCCAGATTTAAAGCATTTTTTGCCGTTCGCTTTCTTGAGTAAT
GTGGCGTTGCTGGTGGGTTTTCTCGCTGTACTTATCGCGAGCGTGTCCCG
GGCGCGGGATCAGGGGATATTTTACGTTACTTGGGGTGTGGTGGATGCAC
GTAAGCTACCGTTGGCATTTGGAAATATTGTGGCGTCATTTGAGGGGATT
GGGACGATTTTGAGCGTGGAGGGGAGTATGGCCCGTGATCAAGTGAGGGG
ATATTACCCTCTGTTGTTGAAACAAACCCTGCTGCTTGTAACAATTTTGT
TTTCTGCTTTTGGGATAGTGGGCTTCGGGGCGTTTGGAAAAGAATTGTGC
AGTGTGGTTCTGACAAATTTGCCCATGGGGGTATGTGCGGACGTGGCGCG
GGTCGCTCTGATCGTAGGATTGTTTTGTACGTATGGCTTTCAAATGTATC
CGGTATATCAAATGATCGACTTGCGGCTGCTTGGAGAAGATGTAGACACC
TCATCGCCCTATTTTTTCCCAGGAGGTTCGTCCCTCCTAGCTCATGACGG
ATATGGTGCCTTGCACTTCTCACCATCACTTGCTGATGCTGCTCCTGCAG
CTGCTGTTGGCACCGCCCTCGGACGAAGAAATATAAGAGCTGCGACCTAC
TTAGGGGTGCGTGTGGGCGTAGTGCTTTTTACGTCCATAGTTGCTTACCT
TCTGCCTGAATTTGAGCTGCTGGTGGCATTAGTGGGATCCATAGGCGGGG
GCATGCTTGCATTTATAATGCCGGGAATTTTGGGGTGGGCCATGTATAAG
GAGACGGCCACGAGGAAAGAGAAGGGGAGGTATGGCTGTCTGATTGCGTT
TGGGGTTGTTGGGGGGGTAATTGGAGCGGGCCACGCGCTGCATGACTTGA
TTTATGGGCAATCGCAGTGCTAG back to top
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