NO17G00970.1, NO17G00970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G00970.1
Unique NameNO17G00970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1257
Alignment locationchr17:310946..312202 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:310946..312202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G00970.1 vs.
Match: EWM21106.1 (myo inositol monophosphatase [Nannochloropsis gaditana])

HSP 1 Score: 540.0 bits (1390), Expect = 6.300e-150
Identity = 275/411 (66.91%), Postives = 322/411 (78.35%), Query Frame = 0 
Query:    1 MGASIDEHKPMLNNFGFSGIGSAGAGHAHLRGGRGRSNT-LTTWFSKRWLLLLVGSIGAFYLLH----WASSSPSPKIISTPIEMAPKVQKLRSAKSMVKDGKVRLSDLIGAAIHLSEIAAHEITEVKLTGVETTKVKGQTDEGVDEPVTLADARSNSVFVNGLRQLFPGIDILSEETEPEVKEIRISTVNDVELEHDPWLDLKDLLVTVDPLDATKEFTENLLHFVTTMVCVVHKGKPIAGIINEPFAKDEAAIWGISLDEESAGRSINTVDELGQVSVESFNDLHGLQASLEGAEAAFEKVMISRSHTGPGANVVSEFLPGKKPEFAGGSGYKALSVIRGQADAYVHVTKIKSWDVCAADALVHAAGGMFTNLKGERLVYVKDDPMISGGLVATGDVPAHGWYMEKLAP 407
            MGASIDE KPM++ FG++   S+G G AH RG RGRS+    TW  + W LL+VGS GAFYL+H      SS+ +PK+ S         Q+LRS  S V++GKVRLSDLIGA+IHLSE+AAHEIT+VK  G E T+VKG+TDEGVDEPVTLADARSNSVFVNGLR+LFPGI ILSEET+P+++E+ IS +N VEL HDPWLDLKD+L+TVDPLDATKEFTENLLHFVTTMVCVVHKGKPIAGIINEPF KDEAA+WG++LD+ + G  +                 HGLQ S E   A  +KV+ISRSHTG GA+VVSE+LPGK+P FAGGSGYKAL V+ G A+AYVHVTKIKSWDVCAADA+VHAAGG FTNLKGERLVY KDDP+ISGG++A  D   H WY+EKLAP
Sbjct:    1 MGASIDERKPMVSGFGYASHSSSGIGSAHFRG-RGRSHAPFKTWIWRHWPLLMVGSFGAFYLIHRLSHMGSSTSAPKVTSQ------SAQQLRSDSSRVQNGKVRLSDLIGASIHLSEVAAHEITDVKFGGKEATEVKGKTDEGVDEPVTLADARSNSVFVNGLRELFPGISILSEETDPDLEEVGISAINGVELTHDPWLDLKDILITVDPLDATKEFTENLLHFVTTMVCVVHKGKPIAGIINEPFVKDEAAVWGVALDKATEGADLRV--------------SHGLQPSTEDTVAGADKVVISRSHTGSGADVVSEYLPGKQPVFAGGSGYKALRVLEGDANAYVHVTKIKSWDVCAADAVVHAAGGKFTNLKGERLVYEKDDPLISGGIIAAADSKMHAWYVEKLAP 390
The following BLAST results are available for this feature:
BLAST of NO17G00970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21106.16.300e-15066.91myo inositol monophosphatase [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G00970NO17G00970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G00970.1NO17G00970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G00970.1.cds1NO17G00970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G00970.1 ID=NO17G00970.1|Name=NO17G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1257bp
ATGGGTGCGTCCATCGACGAGCACAAACCCATGCTCAATAATTTCGGGTT
CTCGGGCATTGGGAGTGCGGGTGCTGGCCATGCACACTTGCGAGGCGGCA
GGGGTCGCTCCAATACTTTGACCACCTGGTTCTCGAAGCGGTGGCTCCTC
TTGCTGGTTGGTTCAATCGGCGCCTTCTACCTACTCCACTGGGCATCCTC
TTCTCCTTCACCCAAAATAATTTCGACGCCTATAGAGATGGCTCCCAAGG
TGCAGAAATTGCGGAGTGCCAAAAGCATGGTGAAGGATGGGAAGGTCCGT
TTGAGTGACTTGATAGGTGCAGCCATTCATTTGTCCGAAATAGCGGCGCA
TGAAATCACGGAAGTTAAGCTCACGGGCGTGGAAACCACGAAAGTCAAGG
GGCAGACAGACGAAGGGGTGGATGAGCCAGTCACCCTGGCGGATGCGCGG
AGTAACAGCGTGTTTGTCAACGGGCTGCGACAGCTTTTCCCGGGGATTGA
TATTTTGTCGGAGGAGACCGAGCCGGAAGTAAAGGAGATAAGGATCAGCA
CTGTTAATGACGTGGAGCTCGAGCATGATCCTTGGTTGGACTTGAAAGAT
CTGCTGGTTACTGTCGATCCTTTGGATGCCACCAAGGAGTTTACAGAGAA
TCTGCTTCATTTTGTCACTACAATGGTATGTGTCGTGCATAAAGGGAAGC
CTATAGCGGGCATTATCAACGAACCCTTCGCCAAAGACGAAGCGGCCATT
TGGGGGATTTCGCTTGATGAAGAATCGGCGGGGAGAAGCATCAATACAGT
GGATGAATTAGGCCAGGTTTCGGTGGAGAGCTTTAACGACTTACATGGGC
TGCAGGCCTCGCTGGAGGGCGCAGAAGCTGCTTTCGAGAAGGTAATGATT
TCTCGGTCGCACACGGGGCCAGGCGCAAATGTTGTGTCGGAGTTCTTGCC
CGGAAAGAAACCGGAATTTGCAGGTGGGAGTGGTTACAAGGCCTTGAGTG
TGATAAGGGGCCAGGCAGATGCCTATGTGCACGTGACAAAGATAAAGTCG
TGGGATGTGTGTGCGGCCGATGCACTGGTGCATGCTGCTGGCGGCATGTT
CACCAATCTGAAGGGGGAGCGGTTGGTGTATGTGAAAGACGACCCCATGA
TTTCCGGCGGGCTGGTCGCTACGGGGGATGTCCCGGCACATGGGTGGTAT
ATGGAGAAGCTGGCGCCGGTGCAGATGCCGCCTAGTGATGGGCATAAAAA
GAAGTAG
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protein sequence of NO17G00970.1

>NO17G00970.1-protein ID=NO17G00970.1-protein|Name=NO17G00970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MGASIDEHKPMLNNFGFSGIGSAGAGHAHLRGGRGRSNTLTTWFSKRWLL
LLVGSIGAFYLLHWASSSPSPKIISTPIEMAPKVQKLRSAKSMVKDGKVR
LSDLIGAAIHLSEIAAHEITEVKLTGVETTKVKGQTDEGVDEPVTLADAR
SNSVFVNGLRQLFPGIDILSEETEPEVKEIRISTVNDVELEHDPWLDLKD
LLVTVDPLDATKEFTENLLHFVTTMVCVVHKGKPIAGIINEPFAKDEAAI
WGISLDEESAGRSINTVDELGQVSVESFNDLHGLQASLEGAEAAFEKVMI
SRSHTGPGANVVSEFLPGKKPEFAGGSGYKALSVIRGQADAYVHVTKIKS
WDVCAADALVHAAGGMFTNLKGERLVYVKDDPMISGGLVATGDVPAHGWY
MEKLAPVQMPPSDGHKKK*
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mRNA from alignment at chr17:310946..312202-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G00970.1 ID=NO17G00970.1|Name=NO17G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1257bp|location=Sequence derived from alignment at chr17:310946..312202- (Nannochloropsis oceanica)
ATGGGTGCGTCCATCGACGAGCACAAACCCATGCTCAATAATTTCGGGTT
CTCGGGCATTGGGAGTGCGGGTGCTGGCCATGCACACTTGCGAGGCGGCA
GGGGTCGCTCCAATACTTTGACCACCTGGTTCTCGAAGCGGTGGCTCCTC
TTGCTGGTTGGTTCAATCGGCGCCTTCTACCTACTCCACTGGGCATCCTC
TTCTCCTTCACCCAAAATAATTTCGACGCCTATAGAGATGGCTCCCAAGG
TGCAGAAATTGCGGAGTGCCAAAAGCATGGTGAAGGATGGGAAGGTCCGT
TTGAGTGACTTGATAGGTGCAGCCATTCATTTGTCCGAAATAGCGGCGCA
TGAAATCACGGAAGTTAAGCTCACGGGCGTGGAAACCACGAAAGTCAAGG
GGCAGACAGACGAAGGGGTGGATGAGCCAGTCACCCTGGCGGATGCGCGG
AGTAACAGCGTGTTTGTCAACGGGCTGCGACAGCTTTTCCCGGGGATTGA
TATTTTGTCGGAGGAGACCGAGCCGGAAGTAAAGGAGATAAGGATCAGCA
CTGTTAATGACGTGGAGCTCGAGCATGATCCTTGGTTGGACTTGAAAGAT
CTGCTGGTTACTGTCGATCCTTTGGATGCCACCAAGGAGTTTACAGAGAA
TCTGCTTCATTTTGTCACTACAATGGTATGTGTCGTGCATAAAGGGAAGC
CTATAGCGGGCATTATCAACGAACCCTTCGCCAAAGACGAAGCGGCCATT
TGGGGGATTTCGCTTGATGAAGAATCGGCGGGGAGAAGCATCAATACAGT
GGATGAATTAGGCCAGGTTTCGGTGGAGAGCTTTAACGACTTACATGGGC
TGCAGGCCTCGCTGGAGGGCGCAGAAGCTGCTTTCGAGAAGGTAATGATT
TCTCGGTCGCACACGGGGCCAGGCGCAAATGTTGTGTCGGAGTTCTTGCC
CGGAAAGAAACCGGAATTTGCAGGTGGGAGTGGTTACAAGGCCTTGAGTG
TGATAAGGGGCCAGGCAGATGCCTATGTGCACGTGACAAAGATAAAGTCG
TGGGATGTGTGTGCGGCCGATGCACTGGTGCATGCTGCTGGCGGCATGTT
CACCAATCTGAAGGGGGAGCGGTTGGTGTATGTGAAAGACGACCCCATGA
TTTCCGGCGGGCTGGTCGCTACGGGGGATGTCCCGGCACATGGGTGGTAT
ATGGAGAAGCTGGCGCCGGTGCAGATGCCGCCTAGTGATGGGCATAAAAA
GAAGTAG
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Coding sequence (CDS) from alignment at chr17:310946..312202-

>NO17G00970.1 ID=NO17G00970.1|Name=NO17G00970.1|organism=Nannochloropsis oceanica|type=CDS|length=1257bp|location=Sequence derived from alignment at chr17:310946..312202- (Nannochloropsis oceanica)
ATGGGTGCGTCCATCGACGAGCACAAACCCATGCTCAATAATTTCGGGTT
CTCGGGCATTGGGAGTGCGGGTGCTGGCCATGCACACTTGCGAGGCGGCA
GGGGTCGCTCCAATACTTTGACCACCTGGTTCTCGAAGCGGTGGCTCCTC
TTGCTGGTTGGTTCAATCGGCGCCTTCTACCTACTCCACTGGGCATCCTC
TTCTCCTTCACCCAAAATAATTTCGACGCCTATAGAGATGGCTCCCAAGG
TGCAGAAATTGCGGAGTGCCAAAAGCATGGTGAAGGATGGGAAGGTCCGT
TTGAGTGACTTGATAGGTGCAGCCATTCATTTGTCCGAAATAGCGGCGCA
TGAAATCACGGAAGTTAAGCTCACGGGCGTGGAAACCACGAAAGTCAAGG
GGCAGACAGACGAAGGGGTGGATGAGCCAGTCACCCTGGCGGATGCGCGG
AGTAACAGCGTGTTTGTCAACGGGCTGCGACAGCTTTTCCCGGGGATTGA
TATTTTGTCGGAGGAGACCGAGCCGGAAGTAAAGGAGATAAGGATCAGCA
CTGTTAATGACGTGGAGCTCGAGCATGATCCTTGGTTGGACTTGAAAGAT
CTGCTGGTTACTGTCGATCCTTTGGATGCCACCAAGGAGTTTACAGAGAA
TCTGCTTCATTTTGTCACTACAATGGTATGTGTCGTGCATAAAGGGAAGC
CTATAGCGGGCATTATCAACGAACCCTTCGCCAAAGACGAAGCGGCCATT
TGGGGGATTTCGCTTGATGAAGAATCGGCGGGGAGAAGCATCAATACAGT
GGATGAATTAGGCCAGGTTTCGGTGGAGAGCTTTAACGACTTACATGGGC
TGCAGGCCTCGCTGGAGGGCGCAGAAGCTGCTTTCGAGAAGGTAATGATT
TCTCGGTCGCACACGGGGCCAGGCGCAAATGTTGTGTCGGAGTTCTTGCC
CGGAAAGAAACCGGAATTTGCAGGTGGGAGTGGTTACAAGGCCTTGAGTG
TGATAAGGGGCCAGGCAGATGCCTATGTGCACGTGACAAAGATAAAGTCG
TGGGATGTGTGTGCGGCCGATGCACTGGTGCATGCTGCTGGCGGCATGTT
CACCAATCTGAAGGGGGAGCGGTTGGTGTATGTGAAAGACGACCCCATGA
TTTCCGGCGGGCTGGTCGCTACGGGGGATGTCCCGGCACATGGGTGGTAT
ATGGAGAAGCTGGCGCCGGTGCAGATGCCGCCTAGTGATGGGCATAAAAA
GAAGTAG
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Synonyms
Publications