NO17G00780.1, NO17G00780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G00780.1
Unique NameNO17G00780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length384
Alignment locationchr17:265577..266353 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:265577..266353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO17G00780.1 vs.
Match: EWM21151.1 (hypothetical protein Naga_100319g7 [Nannochloropsis gaditana])

HSP 1 Score: 98.2 bits (243), Expect = 1.900e-17
Identity = 51/96 (53.12%), Postives = 75/96 (78.12%), Query Frame = 0 
Query:   22 GAAAADGMARIKAKLDELDRVMLEGRRENGRRLQEQQRVTLLAEVGYKATELSKVREQLVQAQQRKVLAEERLRAHEIICQVQQTIEDAFVCTGRK 118
            G  AA+ +AR+ AKLDELDRV+ + R+++ +R++E+++  L+ +VG KA EL+K RE+L Q Q RK  AEERLRAHE++ Q+ +TIE+AFV +GRK
Sbjct:   27 GGDAANAVARVNAKLDELDRVLQDVRQKDIKRVEEEEKARLIEKVGTKAMELNKAREELAQTQLRKAQAEERLRAHELLVQIHKTIENAFVSSGRK 122
The following BLAST results are available for this feature:
BLAST of NO17G00780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21151.11.900e-1753.13hypothetical protein Naga_100319g7 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G00780NO17G00780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G00780.1NO17G00780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G00780.1.cds1NO17G00780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00780.1.cds2NO17G00780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G00780.1 ID=NO17G00780.1|Name=NO17G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=384bp
ATGCTGAATTTTCCAAGCGGTGGTGGCAAGTGGAGCAGCCTGAGTGGTCA
GGCGCCAGGGGGCGGGGCCGCGGCTGCCGATGGCATGGCAAGGATCAAAG
CCAAGCTGGACGAGCTGGACCGGGTAATGCTCGAAGGCCGACGCGAAAAT
GGACGGCGCCTGCAAGAACAGCAGCGAGTGACCCTTCTGGCCGAGGTGGG
GTACAAGGCGACAGAGCTCAGCAAAGTCAGGGAACAGCTGGTACAAGCAC
AGCAGCGAAAGGTGTTGGCGGAGGAGAGGCTGAGGGCCCATGAGATAATT
TGCCAGGTGCAGCAGACGATAGAGGATGCTTTTGTGTGCACGGGCAGGAA
GCCTGGAGCGCAGGAGCACAAGGAAAGAGTGTGA
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protein sequence of NO17G00780.1

>NO17G00780.1-protein ID=NO17G00780.1-protein|Name=NO17G00780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=128bp
MLNFPSGGGKWSSLSGQAPGGGAAAADGMARIKAKLDELDRVMLEGRREN
GRRLQEQQRVTLLAEVGYKATELSKVREQLVQAQQRKVLAEERLRAHEII
CQVQQTIEDAFVCTGRKPGAQEHKERV*
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mRNA from alignment at chr17:265577..266353+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G00780.1 ID=NO17G00780.1|Name=NO17G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=777bp|location=Sequence derived from alignment at chr17:265577..266353+ (Nannochloropsis oceanica)
ATGCTGAATTTTCCAAGCGGTGGTGGCAAGTGGAGCAGCCTGAGTGGTCA
GGCGCCAGGGGGCGGGGCCGCGGCTGCCGATGGCATGGCAAGGATCAAAG
CCAAGCTGGACGAGCTGGACCGGGTAATGCTCGAAGGTAAGAGTAGGTGG
GTAGTAGGGCTATGCATGCATGTGAAGAGGAAATGTATGAACATCCTTTT
CTTCAATTGTGTTACAGCTGAGAAGTCTTCTTGGTTTGATTCTTCCCACG
GCGGGCGTGAGATACGGCTTACTTGTTTGCAGCCCATGAGATGAGACCAC
TGCTGTCCTCCTTACAACCTTTCACGTACGCGATCTCCTCATGCTCATGA
TGTTAGGTTTACCTGCTTACCTTGAGGGTAATGAGTGCGTTTCTTTGTAT
TCGTCAACGTATCCTATTACTTAAAGCTATCTTTCCCCCCTCTTCTCCCC
CCTCCCCTCGGATTAAACAGAAAATATTTAATCGTTTTCCTGGCTATCTC
TCTCCCTCCCTCCCTCTCTCCTTCCCCAGGCCGACGCGAAAATGGACGGC
GCCTGCAAGAACAGCAGCGAGTGACCCTTCTGGCCGAGGTGGGGTACAAG
GCGACAGAGCTCAGCAAAGTCAGGGAACAGCTGGTACAAGCACAGCAGCG
AAAGGTGTTGGCGGAGGAGAGGCTGAGGGCCCATGAGATAATTTGCCAGG
TGCAGCAGACGATAGAGGATGCTTTTGTGTGCACGGGCAGGAAGCCTGGA
GCGCAGGAGCACAAGGAAAGAGTGTGA
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Coding sequence (CDS) from alignment at chr17:265577..266353+

>NO17G00780.1 ID=NO17G00780.1|Name=NO17G00780.1|organism=Nannochloropsis oceanica|type=CDS|length=384bp|location=Sequence derived from alignment at chr17:265577..266353+ (Nannochloropsis oceanica)
ATGCTGAATTTTCCAAGCGGTGGTGGCAAGTGGAGCAGCCTGAGTGGTCA
GGCGCCAGGGGGCGGGGCCGCGGCTGCCGATGGCATGGCAAGGATCAAAG
CCAAGCTGGACGAGCTGGACCGGGTAATGCTCGAAGGCCGACGCGAAAAT
GGACGGCGCCTGCAAGAACAGCAGCGAGTGACCCTTCTGGCCGAGGTGGG
GTACAAGGCGACAGAGCTCAGCAAAGTCAGGGAACAGCTGGTACAAGCAC
AGCAGCGAAAGGTGTTGGCGGAGGAGAGGCTGAGGGCCCATGAGATAATT
TGCCAGGTGCAGCAGACGATAGAGGATGCTTTTGTGTGCACGGGCAGGAA
GCCTGGAGCGCAGGAGCACAAGGAAAGAGTGTGA
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Synonyms
Publications