NO17G00760.1, NO17G00760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G00760.1
Unique NameNO17G00760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length915
Alignment locationchr17:262255..263470 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:262255..263470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G00760.1 vs.
Match: EWM21146.1 (protein serine threonine kinase [Nannochloropsis gaditana])

HSP 1 Score: 430.3 bits (1105), Expect = 5.200e-117
Identity = 214/286 (74.83%), Postives = 242/286 (84.62%), Query Frame = 0 
Query:    1 MIPYYQGYRQGGE-EQGTDNDSQNDSGSSSPGQPPLQQEPQLDAIMMPPPPPIRMPSCPTKPSRDIEAFNRLYVLHEEIGRGAFSVVHRCTNRVTGEDFAVKLIDLRPLQLRDNFDQTRLRREVEIMQRLEHPHIIKLEGVYENDTNLMLVLEYARGTELFDSILQKKRYSEDDARPIFTQVAQALLYLHSLNIIHRDVKPENVVLLDTLSPEGHFPWAKLLDFGLSKMVGTDEGSAARTFVGTPCYLAPEVEARAYGRGGGYGVKVDCWSLGAVLYVMLVARFPE 286
            MIPYYQGY+  G+ +   D  + ++      G    Q E     +MM PP    +P+ PT PSRD+EAFNRLY LHEEIGRGAFSVVHRCTNR+TGEDFAVKL+DLRPLQLR+NFDQ RLRREVEIMQRLEHPHII+LEGV+E+ + L+LVLEYARGTELFDSILQKKRY+E++ARPIF QVA AL YLH L+I+HRDVKPENV+LLD LSPEG +P+AKLLDFGLSKM+G D+GSAARTFVGTPCYLAPEVEARAYGRGGGYG KVDCWSLGAVLYVMLVARFPE
Sbjct:    1 MIPYYQGYQHRGDTDDSNDGSAGSEDRQGGQGAEERQVEAHSGPLMMLPP---SLPAEPTVPSRDMEAFNRLYALHEEIGRGAFSVVHRCTNRITGEDFAVKLMDLRPLQLRENFDQARLRREVEIMQRLEHPHIIRLEGVFEDASTLVLVLEYARGTELFDSILQKKRYTEEEARPIFVQVAHALAYLHRLHIVHRDVKPENVILLDALSPEGFYPFAKLLDFGLSKMIGQDDGSAARTFVGTPCYLAPEVEARAYGRGGGYGTKVDCWSLGAVLYVMLVARFPE 283
The following BLAST results are available for this feature:
BLAST of NO17G00760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21146.15.200e-11774.83protein serine threonine kinase [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G00760NO17G00760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G00760.1NO17G00760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G00760.1.cds1NO17G00760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00760.1.cds2NO17G00760.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G00760.1 ID=NO17G00760.1|Name=NO17G00760.1|organism=Nannochloropsis oceanica|type=mRNA|length=915bp
ATGATACCATACTACCAAGGATACCGACAGGGTGGGGAGGAACAGGGGAC
GGACAACGATAGTCAAAATGATAGTGGTTCCAGCAGCCCCGGTCAGCCGC
CTCTGCAACAGGAGCCGCAGCTAGATGCTATCATGATGCCTCCGCCACCG
CCAATTCGAATGCCCTCATGCCCAACCAAGCCCTCCCGCGACATCGAGGC
GTTCAACAGACTGTACGTCCTGCACGAAGAAATCGGCCGTGGTGCCTTCA
GTGTCGTCCACCGGTGCACCAACCGGGTGACCGGCGAAGATTTTGCCGTC
AAATTAATCGATCTCCGGCCCTTGCAACTCCGTGATAACTTTGATCAGAC
GCGCCTACGACGAGAAGTTGAAATAATGCAACGCCTAGAACACCCCCACA
TCATCAAGCTCGAAGGTGTCTACGAGAATGACACCAACTTAATGCTTGTC
CTTGAGTATGCCCGCGGGACCGAACTGTTTGACTCCATCCTACAGAAAAA
ACGGTACTCGGAAGACGACGCTCGGCCCATATTCACGCAAGTCGCGCAAG
CCCTGCTGTACCTCCACTCCCTCAACATCATCCACCGGGACGTAAAGCCC
GAAAATGTCGTCTTGTTGGACACTCTCTCCCCAGAGGGGCATTTTCCATG
GGCCAAGCTCCTTGATTTTGGCTTGAGCAAGATGGTGGGGACGGATGAAG
GGTCGGCGGCACGGACCTTTGTGGGCACGCCATGCTACCTGGCGCCCGAG
GTGGAGGCGAGGGCCTATGGGAGAGGGGGAGGGTACGGGGTGAAGGTGGA
TTGTTGGAGCTTGGGTGCGGTGTTGTATGTTATGCTGGTGGCGCGGTTTC
CTGAGTTTGATCGGAGTAAGGGGGGGATGACGGTCAAGTTGGAAGCACCG
GCGTGGGGGGGGTGA
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protein sequence of NO17G00760.1

>NO17G00760.1-protein ID=NO17G00760.1-protein|Name=NO17G00760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MIPYYQGYRQGGEEQGTDNDSQNDSGSSSPGQPPLQQEPQLDAIMMPPPP
PIRMPSCPTKPSRDIEAFNRLYVLHEEIGRGAFSVVHRCTNRVTGEDFAV
KLIDLRPLQLRDNFDQTRLRREVEIMQRLEHPHIIKLEGVYENDTNLMLV
LEYARGTELFDSILQKKRYSEDDARPIFTQVAQALLYLHSLNIIHRDVKP
ENVVLLDTLSPEGHFPWAKLLDFGLSKMVGTDEGSAARTFVGTPCYLAPE
VEARAYGRGGGYGVKVDCWSLGAVLYVMLVARFPEFDRSKGGMTVKLEAP
AWGG*
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mRNA from alignment at chr17:262255..263470-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G00760.1 ID=NO17G00760.1|Name=NO17G00760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1216bp|location=Sequence derived from alignment at chr17:262255..263470- (Nannochloropsis oceanica)
ATGATACCATACTACCAAGGATACCGACAGGGTGGGGAGGAACAGGGGAC
GGACAACGATAGTCAAAATGATAGTGGTTCCAGCAGCCCCGGTCAGCCGC
CTCTGCAACAGGAGCCGCAGCTAGATGCTATCATGATGCCTCCGCCACCG
CCAATTCGAATGCCCTCATGCCCAACCAAGCCCTCCCGCGACATCGAGGC
GTTCAACAGGTACACAAGGATGAAACGCTTAGGTGTATCTTTTGAAGGGG
AATGGAGCATATCATGAAGATTATTTCATTGCGTGTGCTACCATAGCCCA
AGTGCATGTTTGCGGTGCTTATGTATCGCGGCGGAGTTGGAAGCATTGGC
CACTTGACAAGTGTCGTGGCTTGACCTATGGTATATTTTGAATTTTCGGG
CCTTTTTGCAGCAGATACATGGTATTCCCTGCAGTTGCCTCACCCTGCTT
CATCGCACCTCTGGTATAGCAATCCATTCTCTCTTCCTTCCCTCCCCATC
CTCCCTACAGACTGTACGTCCTGCACGAAGAAATCGGCCGTGGTGCCTTC
AGTGTCGTCCACCGGTGCACCAACCGGGTGACCGGCGAAGATTTTGCCGT
CAAATTAATCGATCTCCGGCCCTTGCAACTCCGTGATAACTTTGATCAGA
CGCGCCTACGACGAGAAGTTGAAATAATGCAACGCCTAGAACACCCCCAC
ATCATCAAGCTCGAAGGTGTCTACGAGAATGACACCAACTTAATGCTTGT
CCTTGAGTATGCCCGCGGGACCGAACTGTTTGACTCCATCCTACAGAAAA
AACGGTACTCGGAAGACGACGCTCGGCCCATATTCACGCAAGTCGCGCAA
GCCCTGCTGTACCTCCACTCCCTCAACATCATCCACCGGGACGTAAAGCC
CGAAAATGTCGTCTTGTTGGACACTCTCTCCCCAGAGGGGCATTTTCCAT
GGGCCAAGCTCCTTGATTTTGGCTTGAGCAAGATGGTGGGGACGGATGAA
GGGTCGGCGGCACGGACCTTTGTGGGCACGCCATGCTACCTGGCGCCCGA
GGTGGAGGCGAGGGCCTATGGGAGAGGGGGAGGGTACGGGGTGAAGGTGG
ATTGTTGGAGCTTGGGTGCGGTGTTGTATGTTATGCTGGTGGCGCGGTTT
CCTGAGTTTGATCGGAGTAAGGGGGGGATGACGGTCAAGTTGGAAGCACC
GGCGTGGGGGGGGTGA
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Coding sequence (CDS) from alignment at chr17:262255..263470-

>NO17G00760.1 ID=NO17G00760.1|Name=NO17G00760.1|organism=Nannochloropsis oceanica|type=CDS|length=915bp|location=Sequence derived from alignment at chr17:262255..263470- (Nannochloropsis oceanica)
ATGATACCATACTACCAAGGATACCGACAGGGTGGGGAGGAACAGGGGAC
GGACAACGATAGTCAAAATGATAGTGGTTCCAGCAGCCCCGGTCAGCCGC
CTCTGCAACAGGAGCCGCAGCTAGATGCTATCATGATGCCTCCGCCACCG
CCAATTCGAATGCCCTCATGCCCAACCAAGCCCTCCCGCGACATCGAGGC
GTTCAACAGACTGTACGTCCTGCACGAAGAAATCGGCCGTGGTGCCTTCA
GTGTCGTCCACCGGTGCACCAACCGGGTGACCGGCGAAGATTTTGCCGTC
AAATTAATCGATCTCCGGCCCTTGCAACTCCGTGATAACTTTGATCAGAC
GCGCCTACGACGAGAAGTTGAAATAATGCAACGCCTAGAACACCCCCACA
TCATCAAGCTCGAAGGTGTCTACGAGAATGACACCAACTTAATGCTTGTC
CTTGAGTATGCCCGCGGGACCGAACTGTTTGACTCCATCCTACAGAAAAA
ACGGTACTCGGAAGACGACGCTCGGCCCATATTCACGCAAGTCGCGCAAG
CCCTGCTGTACCTCCACTCCCTCAACATCATCCACCGGGACGTAAAGCCC
GAAAATGTCGTCTTGTTGGACACTCTCTCCCCAGAGGGGCATTTTCCATG
GGCCAAGCTCCTTGATTTTGGCTTGAGCAAGATGGTGGGGACGGATGAAG
GGTCGGCGGCACGGACCTTTGTGGGCACGCCATGCTACCTGGCGCCCGAG
GTGGAGGCGAGGGCCTATGGGAGAGGGGGAGGGTACGGGGTGAAGGTGGA
TTGTTGGAGCTTGGGTGCGGTGTTGTATGTTATGCTGGTGGCGCGGTTTC
CTGAGTTTGATCGGAGTAAGGGGGGGATGACGGTCAAGTTGGAAGCACCG
GCGTGGGGGGGGTGA
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Synonyms
Publications