NO17G00740.1, NO17G00740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G00740.1
Unique NameNO17G00740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length717
Alignment locationchr17:257308..258231 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:257308..258231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G00740.1 vs.
Match: XP_005852679.1 (NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Nannochloropsis gaditana CCMP526]; EKU23157.1 NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Nannochloropsis gaditana CCMP526]; EWM21160.1 nadh dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 371.7 bits (953), Expect = 1.700e-99
Identity = 189/222 (85.14%), Postives = 200/222 (90.09%), Query Frame = 0 
Query:   22 MASQLLARALRRVAVTASSSSSASLLRPAVS----QATVSFSSGG-SNKPAPLEDPKTSFSEVLDRATNIFFLTELLRGFWLSFEVAMKPKVTINYPFEKGHLSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEADQRADGSRKTTRYDIDMTKCIFCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLANGDKWEVAIARNLAAEHLYR 239
            MASQLL R L+R      S+S  S +RPAV     QA+++ SS   S  PAPL++PKTSFSEVLDRATNIFFLTEL+RGFWLSFEV+MKPKVTINYPFEKGHLSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEA+QRADGSRKTTRYDIDMTKCIFCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLANGDKWEVAIARNLAAEHLYR
Sbjct:    1 MASQLLTRVLQRGL--PPSASLRSSIRPAVQAPLVQASLALSSSNKSTPPAPLQEPKTSFSEVLDRATNIFFLTELMRGFWLSFEVSMKPKVTINYPFEKGHLSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAEQRADGSRKTTRYDIDMTKCIFCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLANGDKWEVAIARNLAAEHLYR 220
The following BLAST results are available for this feature:
BLAST of NO17G00740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852679.11.700e-9985.14NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G00740NO17G00740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G00740.1NO17G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G00740.1.cds1NO17G00740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00740.1.cds2NO17G00740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G00740.1 ID=NO17G00740.1|Name=NO17G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=717bp
ATGGCTGCCAGGTGGCAATCCGTGTTTGTCTTGGTGTCCTTGTCCACATC
CCCTTCGAGTGGCATGGCTTCGCAGCTCCTGGCCCGTGCGTTGCGACGTG
TGGCTGTGACCGCTTCCTCGTCCTCGTCTGCCTCCCTCCTGCGCCCCGCC
GTCTCCCAAGCCACTGTCTCCTTCAGCAGCGGCGGGAGCAACAAACCCGC
TCCTTTGGAAGATCCCAAGACGAGTTTCTCGGAGGTTCTGGACCGGGCGA
CCAACATCTTTTTCTTGACGGAGTTATTGCGAGGGTTTTGGTTGTCGTTC
GAAGTGGCGATGAAGCCCAAGGTCACAATCAACTACCCTTTTGAGAAGGG
GCACCTCTCCCCGCGTTTCCGAGGGGAGCATGCCTTGCGCCGGTATCCGA
ATGGGGAGGAACGTTGTATTGCGTGTAAGTTGTGCGAAGCGATTTGCCCC
GCCCAGGCTATCACGATTGAAGCGGACCAGCGGGCGGATGGATCGAGGAA
GACGACAAGGTACGACATTGATATGACCAAGTGCATTTTTTGTGGGTTTT
GCCAGGAAGCGTGCCCCGTGGATGCGATTGTGGAGGGGCCAAATTTTGAA
TTTGCGACGGAGACTCACGAAGAATTGTTGTATGATAAGGAGAAGTTGCT
CGCCAACGGGGATAAATGGGAGGTGGCTATCGCGAGGAATCTGGCCGCGG
AGCACTTGTACCGGTGA
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protein sequence of NO17G00740.1

>NO17G00740.1-protein ID=NO17G00740.1-protein|Name=NO17G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MAARWQSVFVLVSLSTSPSSGMASQLLARALRRVAVTASSSSSASLLRPA
VSQATVSFSSGGSNKPAPLEDPKTSFSEVLDRATNIFFLTELLRGFWLSF
EVAMKPKVTINYPFEKGHLSPRFRGEHALRRYPNGEERCIACKLCEAICP
AQAITIEADQRADGSRKTTRYDIDMTKCIFCGFCQEACPVDAIVEGPNFE
FATETHEELLYDKEKLLANGDKWEVAIARNLAAEHLYR*
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mRNA from alignment at chr17:257308..258231+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G00740.1 ID=NO17G00740.1|Name=NO17G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=924bp|location=Sequence derived from alignment at chr17:257308..258231+ (Nannochloropsis oceanica)
ATGGCTGCCAGGTGGCAATCCGTGTTTGTCTTGGTGTCCTTGTCCACATC
CCCTTCGAGTGGTGAGAGCTCTCGTGGATACACCCCGCTGAGTGTTGGAC
GCGTGTGAAGCCAGGTCCTCGAGCGTCATCACATACTTTGCCTCAAACAA
CGGCCCTGCCCCCTTCCTTGCCCCCCCCCCGCATCTATGCCCGTTTTGTC
GCTACCTTATATCAACTCCACTCATTCACCCGTACTTCGACTGCATCTCA
CAAATCCACACCACCCAGGCATGGCTTCGCAGCTCCTGGCCCGTGCGTTG
CGACGTGTGGCTGTGACCGCTTCCTCGTCCTCGTCTGCCTCCCTCCTGCG
CCCCGCCGTCTCCCAAGCCACTGTCTCCTTCAGCAGCGGCGGGAGCAACA
AACCCGCTCCTTTGGAAGATCCCAAGACGAGTTTCTCGGAGGTTCTGGAC
CGGGCGACCAACATCTTTTTCTTGACGGAGTTATTGCGAGGGTTTTGGTT
GTCGTTCGAAGTGGCGATGAAGCCCAAGGTCACAATCAACTACCCTTTTG
AGAAGGGGCACCTCTCCCCGCGTTTCCGAGGGGAGCATGCCTTGCGCCGG
TATCCGAATGGGGAGGAACGTTGTATTGCGTGTAAGTTGTGCGAAGCGAT
TTGCCCCGCCCAGGCTATCACGATTGAAGCGGACCAGCGGGCGGATGGAT
CGAGGAAGACGACAAGGTACGACATTGATATGACCAAGTGCATTTTTTGT
GGGTTTTGCCAGGAAGCGTGCCCCGTGGATGCGATTGTGGAGGGGCCAAA
TTTTGAATTTGCGACGGAGACTCACGAAGAATTGTTGTATGATAAGGAGA
AGTTGCTCGCCAACGGGGATAAATGGGAGGTGGCTATCGCGAGGAATCTG
GCCGCGGAGCACTTGTACCGGTGA
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Coding sequence (CDS) from alignment at chr17:257308..258231+

>NO17G00740.1 ID=NO17G00740.1|Name=NO17G00740.1|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at chr17:257308..258231+ (Nannochloropsis oceanica)
ATGGCTGCCAGGTGGCAATCCGTGTTTGTCTTGGTGTCCTTGTCCACATC
CCCTTCGAGTGGCATGGCTTCGCAGCTCCTGGCCCGTGCGTTGCGACGTG
TGGCTGTGACCGCTTCCTCGTCCTCGTCTGCCTCCCTCCTGCGCCCCGCC
GTCTCCCAAGCCACTGTCTCCTTCAGCAGCGGCGGGAGCAACAAACCCGC
TCCTTTGGAAGATCCCAAGACGAGTTTCTCGGAGGTTCTGGACCGGGCGA
CCAACATCTTTTTCTTGACGGAGTTATTGCGAGGGTTTTGGTTGTCGTTC
GAAGTGGCGATGAAGCCCAAGGTCACAATCAACTACCCTTTTGAGAAGGG
GCACCTCTCCCCGCGTTTCCGAGGGGAGCATGCCTTGCGCCGGTATCCGA
ATGGGGAGGAACGTTGTATTGCGTGTAAGTTGTGCGAAGCGATTTGCCCC
GCCCAGGCTATCACGATTGAAGCGGACCAGCGGGCGGATGGATCGAGGAA
GACGACAAGGTACGACATTGATATGACCAAGTGCATTTTTTGTGGGTTTT
GCCAGGAAGCGTGCCCCGTGGATGCGATTGTGGAGGGGCCAAATTTTGAA
TTTGCGACGGAGACTCACGAAGAATTGTTGTATGATAAGGAGAAGTTGCT
CGCCAACGGGGATAAATGGGAGGTGGCTATCGCGAGGAATCTGGCCGCGG
AGCACTTGTACCGGTGA
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Synonyms
Publications